Mutagenetix > Incidental Mutation

Incidental Mutation 'R6722:Lrp2bp'

529636

Institutional Source

Beutler Lab

Gene Symbol

Lrp2bp

Ensembl Gene

ENSMUSG00000031637

Gene Name

Lrp2 binding protein

Synonyms

4930479L12Rik, MegBP, 1700113N17Rik

MMRRC Submission

044840-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.236) question?

Stock #

R6722 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

46463639-46482515 bp(+) (GRCm39)

Type of Mutation

critical splice donor site (1 bp from exon)

DNA Base Change (assembly)

G to A at 46473600 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000106010 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000066451] [ENSMUST00000110380] [ENSMUST00000110381] [ENSMUST00000145597]

AlphaFold

Q9D4C6

Predicted Effect

probably null
Transcript: ENSMUST00000066451

SMART Domains

Protein: ENSMUSP00000067177
Gene: ENSMUSG00000031637

Domain	Start	End	E-Value	Type
low complexity region	42	53	N/A	INTRINSIC
SEL1	110	145	4.45e-3	SMART
SEL1	153	188	5.07e-7	SMART
SEL1	193	226	6.3e-3	SMART
SEL1	227	262	3.9e-8	SMART
Blast:SEL1	263	293	1e-5	BLAST
SEL1	317	352	7.57e-6	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000110380

SMART Domains

Protein: ENSMUSP00000106009
Gene: ENSMUSG00000031637

Domain	Start	End	E-Value	Type
low complexity region	21	32	N/A	INTRINSIC
SEL1	89	124	4.45e-3	SMART
SEL1	132	167	5.07e-7	SMART
SEL1	172	205	6.3e-3	SMART
SEL1	206	241	3.9e-8	SMART
Blast:SEL1	242	272	1e-5	BLAST
SEL1	296	331	7.57e-6	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000110381

SMART Domains

Protein: ENSMUSP00000106010
Gene: ENSMUSG00000031637

Domain	Start	End	E-Value	Type
low complexity region	21	32	N/A	INTRINSIC
SEL1	89	124	4.45e-3	SMART
SEL1	132	167	5.07e-7	SMART
SEL1	172	205	6.3e-3	SMART
SEL1	206	241	3.9e-8	SMART
Blast:SEL1	242	272	1e-5	BLAST
SEL1	296	331	7.57e-6	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000132341

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000138230

Predicted Effect

probably benign
Transcript: ENSMUST00000145597

SMART Domains

Protein: ENSMUSP00000135210
Gene: ENSMUSG00000031637

Domain	Start	End	E-Value	Type
low complexity region	21	32	N/A	INTRINSIC
SEL1	89	124	4.45e-3	SMART
SEL1	132	167	5.07e-7	SMART

Meta Mutation Damage Score

0.9579

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.2%
20x: 95.0%

Validation Efficiency

96% (52/54)

Allele List at MGI

All alleles(3) : Targeted(3)

Other mutations in this stock

Total: 53 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam4	T	G	12: 81,468,228 (GRCm39)	D131A	probably damaging	Het
Ank3	T	C	10: 69,826,074 (GRCm39)		probably benign	Het
Atp1a4	T	C	1: 172,085,617 (GRCm39)		probably benign	Het
Bmal2	T	A	6: 146,720,398 (GRCm39)	D187E	probably damaging	Het
Castor2	T	C	5: 134,164,458 (GRCm39)	S140P	probably benign	Het
Ccdc162	T	C	10: 41,520,637 (GRCm39)	N673S	probably benign	Het
Cd84	G	A	1: 171,700,344 (GRCm39)	V154M	probably damaging	Het
Celsr1	C	A	15: 85,790,115 (GRCm39)		probably null	Het
Cfap57	A	C	4: 118,441,914 (GRCm39)	L718R	probably damaging	Het
Cntnap5b	G	A	1: 100,406,211 (GRCm39)	V803M	probably damaging	Het
Col6a2	C	T	10: 76,450,392 (GRCm39)	V180I	probably damaging	Het
Coq4	A	T	2: 29,678,297 (GRCm39)		probably benign	Het
Cyp2a4	A	G	7: 26,012,983 (GRCm39)	T389A	probably benign	Het
Dennd1c	T	C	17: 57,373,802 (GRCm39)	D587G	probably benign	Het
Dnaja4	A	G	9: 54,607,038 (GRCm39)	D9G	probably damaging	Het
Hes2	T	G	4: 152,244,834 (GRCm39)	L101R	probably damaging	Het
Icam2	A	G	11: 106,273,307 (GRCm39)	S2P	probably damaging	Het
Krt31	A	G	11: 99,939,254 (GRCm39)	L221P	probably damaging	Het
Lipm	A	T	19: 34,098,665 (GRCm39)	N380Y	probably benign	Het
Mbd2	T	A	18: 70,713,819 (GRCm39)	M216K	probably damaging	Het
Mrps33	T	C	6: 39,782,599 (GRCm39)		probably benign	Het
Nbeal2	T	C	9: 110,462,060 (GRCm39)	D1459G	probably damaging	Het
Ncapd3	T	C	9: 26,998,852 (GRCm39)	S1281P	probably benign	Het
Nt5c1b	T	A	12: 10,422,874 (GRCm39)	Y56N	possibly damaging	Het
Nthl1	A	G	17: 24,853,008 (GRCm39)	K71E	probably benign	Het
Or4f62	T	A	2: 111,987,227 (GRCm39)	N310K	probably benign	Het
Parvb	C	T	15: 84,182,180 (GRCm39)	R237W	probably damaging	Het
Pde4a	G	A	9: 21,122,521 (GRCm39)	A806T	probably damaging	Het
Pde4d	C	A	13: 109,769,432 (GRCm39)	S40*	probably null	Het
Pde4dip	G	A	3: 97,625,555 (GRCm39)	R1348*	probably null	Het
Pdx1	C	T	5: 147,207,310 (GRCm39)	P88S	probably damaging	Het
Pnisr	T	A	4: 21,859,165 (GRCm39)	V120D	probably damaging	Het
Prss51	G	T	14: 64,332,508 (GRCm39)	C65F	probably damaging	Het
Pus10	G	A	11: 23,652,975 (GRCm39)	E195K	possibly damaging	Het
Pzp	T	A	6: 128,464,917 (GRCm39)	Q1319L	probably damaging	Het
Rbpms	G	T	8: 34,324,421 (GRCm39)	T101K	probably damaging	Het
Rundc3a	A	G	11: 102,290,775 (GRCm39)	N281S	possibly damaging	Het
Scml4	C	T	10: 42,736,728 (GRCm39)		probably benign	Het
Sez6	T	C	11: 77,844,528 (GRCm39)	V117A	probably damaging	Het
Sgsm2	A	C	11: 74,756,250 (GRCm39)	C366W	probably damaging	Het
Slc12a4	T	C	8: 106,670,882 (GRCm39)		probably null	Het
Smg5	C	T	3: 88,260,332 (GRCm39)	R641C	probably damaging	Het
Stxbp3	A	G	3: 108,723,762 (GRCm39)	Y150H	probably benign	Het
Thoc2l	T	A	5: 104,668,145 (GRCm39)	M889K	probably damaging	Het
Tkt	T	C	14: 30,291,041 (GRCm39)	F351S	probably damaging	Het
Tln1	A	G	4: 43,547,618 (GRCm39)	L781P	probably damaging	Het
Triobp	G	A	15: 78,885,765 (GRCm39)	E1823K	probably damaging	Het
Ttll4	T	C	1: 74,720,948 (GRCm39)	V538A	possibly damaging	Het
Uba52rt	A	G	4: 3,973,386 (GRCm39)	Y59H	probably benign	Het
Vmn1r61	T	A	7: 5,613,687 (GRCm39)	N209I	possibly damaging	Het
Wdr75	T	A	1: 45,844,512 (GRCm39)		probably null	Het
Zfp985	T	C	4: 147,667,528 (GRCm39)	V132A	probably benign	Het
Zswim3	T	A	2: 164,662,544 (GRCm39)		probably null	Het

Other mutations in Lrp2bp

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02152:Lrp2bp	APN	8	46,476,081 (GRCm39)	missense	probably damaging	1.00
PIT4280001:Lrp2bp	UTSW	8	46,476,048 (GRCm39)	missense	probably damaging	0.98
R0016:Lrp2bp	UTSW	8	46,465,068 (GRCm39)	missense	probably damaging	1.00
R0016:Lrp2bp	UTSW	8	46,465,068 (GRCm39)	missense	probably damaging	1.00
R0046:Lrp2bp	UTSW	8	46,466,192 (GRCm39)	nonsense	probably null
R0046:Lrp2bp	UTSW	8	46,466,192 (GRCm39)	nonsense	probably null
R0514:Lrp2bp	UTSW	8	46,464,995 (GRCm39)	missense	probably damaging	1.00
R0838:Lrp2bp	UTSW	8	46,478,161 (GRCm39)	missense	possibly damaging	0.87
R1465:Lrp2bp	UTSW	8	46,478,272 (GRCm39)	missense	possibly damaging	0.93
R1465:Lrp2bp	UTSW	8	46,478,272 (GRCm39)	missense	possibly damaging	0.93
R1735:Lrp2bp	UTSW	8	46,465,025 (GRCm39)	missense	probably benign	0.26
R1842:Lrp2bp	UTSW	8	46,464,152 (GRCm39)	missense	probably benign
R2191:Lrp2bp	UTSW	8	46,466,206 (GRCm39)	missense	probably benign	0.07
R2192:Lrp2bp	UTSW	8	46,466,206 (GRCm39)	missense	probably benign	0.07
R4716:Lrp2bp	UTSW	8	46,466,208 (GRCm39)	missense	probably benign	0.23
R6789:Lrp2bp	UTSW	8	46,466,151 (GRCm39)	missense	possibly damaging	0.56
R7643:Lrp2bp	UTSW	8	46,473,564 (GRCm39)	splice site	probably null
R8807:Lrp2bp	UTSW	8	46,473,732 (GRCm39)	missense	probably damaging	1.00
R9656:Lrp2bp	UTSW	8	46,466,158 (GRCm39)	missense	probably benign	0.30

Predicted Primers

PCR Primer
(F):5'- AGAGCGGTTGGTTATACTCCTAAG -3'
(R):5'- ACCGGGCAGTTACCTTTTCC -3'

Sequencing Primer
(F):5'- CGGTTGGTTATACTCCTAAGCATAG -3'
(R):5'- GGGCAGTTACCTTTTCCAACTC -3'

Posted On

2018-08-01