Mutagenetix > Incidental Mutation

Incidental Mutation 'R7131:Dctd'

552658

Institutional Source

Beutler Lab

Gene Symbol

Dctd

Ensembl Gene

ENSMUSG00000031562

Gene Name

dCMP deaminase

Synonyms

MMRRC Submission

045216-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7131 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

48099092-48153233 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 48112040 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Serine to Glycine at position 67 (S67G)

Ref Sequence

ENSEMBL: ENSMUSP00000033966 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000033966] [ENSMUST00000170263] [ENSMUST00000174278] [ENSMUST00000174379] [ENSMUST00000174818]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000033966
AA Change: S67G

PolyPhen 2 Score 0.017 (Sensitivity: 0.95; Specificity: 0.80)

SMART Domains

Protein: ENSMUSP00000033966
Gene: ENSMUSG00000031562
AA Change: S67G

Domain	Start	End	E-Value	Type
Pfam:dCMP_cyt_deam_1	19	135	5e-31	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000170263
AA Change: S67G

PolyPhen 2 Score 0.017 (Sensitivity: 0.95; Specificity: 0.80)

SMART Domains

Protein: ENSMUSP00000126733
Gene: ENSMUSG00000031562
AA Change: S67G

Domain	Start	End	E-Value	Type
Pfam:dCMP_cyt_deam_1	19	135	1.2e-30	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000174278
AA Change: S67G

PolyPhen 2 Score 0.017 (Sensitivity: 0.95; Specificity: 0.80)

SMART Domains

Protein: ENSMUSP00000133445
Gene: ENSMUSG00000031562
AA Change: S67G

Domain	Start	End	E-Value	Type
Pfam:dCMP_cyt_deam_1	19	135	1.2e-30	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000174379
AA Change: S67G

PolyPhen 2 Score 0.014 (Sensitivity: 0.96; Specificity: 0.79)

SMART Domains

Protein: ENSMUSP00000134195
Gene: ENSMUSG00000031562
AA Change: S67G

Domain	Start	End	E-Value	Type
Pfam:dCMP_cyt_deam_1	19	103	3.5e-12	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000174818
AA Change: S67G

PolyPhen 2 Score 0.007 (Sensitivity: 0.96; Specificity: 0.75)

SMART Domains

Protein: ENSMUSP00000134003
Gene: ENSMUSG00000031562
AA Change: S67G

Domain	Start	End	E-Value	Type
Pfam:dCMP_cyt_deam_1	19	131	1.5e-27	PFAM

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.0%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene catalyzes the deamination of dCMP to dUMP, the nucleotide substrate for thymidylate synthase. The encoded protein is allosterically activated by dCTP and inhibited by dTTP, and is found as a homohexamer. This protein uses zinc as a cofactor for its activity. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 100 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4931409K22Rik	A	G	5: 24,548,956 (GRCm38)	V435A	possibly damaging	Het
Abca13	A	G	11: 9,291,893 (GRCm38)	N1252S	probably benign	Het
Abcc3	A	T	11: 94,365,031 (GRCm38)	F543I	probably damaging	Het
Adam15	T	A	3: 89,346,980 (GRCm38)	Q170L	possibly damaging	Het
AF366264	A	T	8: 13,836,982 (GRCm38)	W370R	probably damaging	Het
Aldoc	A	G	11: 78,324,456 (GRCm38)	I19V	possibly damaging	Het
Atrip	T	C	9: 109,060,420 (GRCm38)	I711M	probably benign	Het
Brwd1	A	C	16: 96,066,498 (GRCm38)	L149R	probably damaging	Het
Capn9	A	T	8: 124,576,278 (GRCm38)	D45V	probably damaging	Het
Card9	G	A	2: 26,358,835 (GRCm38)	R101C	probably damaging	Het
Casc1	A	T	6: 145,177,406 (GRCm38)	L578Q	probably null	Het
Ccdc36	A	T	9: 108,417,420 (GRCm38)	D98E	probably benign	Het
Ccdc87	A	G	19: 4,841,757 (GRCm38)	E759G	probably damaging	Het
Cep250	T	C	2: 155,965,077 (GRCm38)	M193T	probably damaging	Het
Cfap54	T	C	10: 92,821,104 (GRCm38)	K3029E	probably benign	Het
Chrna9	G	A	5: 65,977,141 (GRCm38)	G445D	possibly damaging	Het
Cluap1	C	T	16: 3,940,775 (GRCm38)	S367L	probably benign	Het
Col5a1	A	G	2: 27,929,486 (GRCm38)	D200G	unknown	Het
Crhr2	T	C	6: 55,092,127 (GRCm38)	N388D		Het
Cyp2b23	A	G	7: 26,681,413 (GRCm38)	L129P	probably benign	Het
Cyr61	T	C	3: 145,648,781 (GRCm38)	D125G	probably damaging	Het
Dhtkd1	C	G	2: 5,904,070 (GRCm38)	V738L	probably benign	Het
Dnah17	C	T	11: 118,079,658 (GRCm38)	D2173N	probably benign	Het
Dnah7c	G	T	1: 46,681,772 (GRCm38)	A2819S	probably benign	Het
Dot1l	A	G	10: 80,792,341 (GRCm38)	H1071R	unknown	Het
Doxl2	T	A	6: 48,976,372 (GRCm38)	Y410*	probably null	Het
Dync2h1	T	A	9: 7,075,786 (GRCm38)	D3027V	probably damaging	Het
Efl1	A	G	7: 82,658,064 (GRCm38)	Y56C	probably damaging	Het
Eif4e1b	A	T	13: 54,784,100 (GRCm38)	R29W	probably null	Het
Evc2	A	G	5: 37,410,258 (GRCm38)	R860G	probably damaging	Het
Fbxl12	G	A	9: 20,644,383 (GRCm38)		probably benign	Het
Fibp	T	A	19: 5,461,491 (GRCm38)	I129N	probably damaging	Het
Folh1	G	T	7: 86,726,112 (GRCm38)	H555Q	probably damaging	Het
Gcnt4	A	T	13: 96,946,519 (GRCm38)	T108S	probably damaging	Het
Gm436	A	G	4: 144,670,067 (GRCm38)	V365A	probably damaging	Het
H1fnt	T	A	15: 98,256,369 (GRCm38)	K300*	probably null	Het
Hecw2	A	T	1: 53,865,121 (GRCm38)	V1156E	probably damaging	Het
Herc3	C	G	6: 58,887,424 (GRCm38)	A681G	probably damaging	Het
Igkv13-84	T	A	6: 68,939,780 (GRCm38)	C20*	probably null	Het
Ivd	C	A	2: 118,869,774 (GRCm38)	T94K	probably damaging	Het
Kank2	C	T	9: 21,794,679 (GRCm38)	A348T	probably benign	Het
Kcnma1	T	C	14: 23,367,494 (GRCm38)	Y889C	probably damaging	Het
Kif13b	T	C	14: 64,773,068 (GRCm38)	V1272A	probably damaging	Het
Kmt2d	GCTGCTGCT	GCTGCTGCTCCTGCTGCT	15: 98,849,616 (GRCm38)		probably benign	Het
Kmt5b	T	A	19: 3,815,412 (GRCm38)	D825E	probably benign	Het
Krt39	C	T	11: 99,520,871 (GRCm38)	A130T	probably benign	Het
Krtap4-9	C	T	11: 99,785,457 (GRCm38)	T68I	unknown	Het
Lmbr1l	A	T	15: 98,906,323 (GRCm38)	V365E	probably benign	Het
Lonp1	C	T	17: 56,617,814 (GRCm38)	R531Q	probably damaging	Het
Mecom	T	A	3: 29,980,945 (GRCm38)	H194L	probably damaging	Het
Mlx	C	T	11: 101,089,242 (GRCm38)	H188Y	probably damaging	Het
Mrps10	T	C	17: 47,375,015 (GRCm38)	S77P	probably damaging	Het
Mst1	A	G	9: 108,084,931 (GRCm38)	E716G	probably null	Het
Mttp	C	T	3: 138,116,132 (GRCm38)	V210I	probably benign	Het
Mug2	T	C	6: 122,075,247 (GRCm38)	V988A	probably damaging	Het
Ndufb6	A	G	4: 40,279,336 (GRCm38)	M1T	probably null	Het
Neurog1	A	T	13: 56,251,750 (GRCm38)	N61K	probably benign	Het
Nlrp14	A	G	7: 107,184,814 (GRCm38)	D581G	possibly damaging	Het
Nlrp4a	C	A	7: 26,449,833 (GRCm38)	N288K	probably benign	Het
Notch3	T	A	17: 32,144,217 (GRCm38)	H1264L	probably benign	Het
Olfr384	A	T	11: 73,602,736 (GRCm38)	D52V	possibly damaging	Het
Olfr394	A	T	11: 73,887,954 (GRCm38)	C139*	probably null	Het
Olfr402	A	G	11: 74,155,780 (GRCm38)	M209V	probably benign	Het
Patl2	A	T	2: 122,121,782 (GRCm38)		probably null	Het
Pfkfb4	A	G	9: 109,007,302 (GRCm38)	T133A	probably benign	Het
Pla2g4f	T	C	2: 120,304,554 (GRCm38)	E471G	probably null	Het
Postn	T	C	3: 54,362,635 (GRCm38)	V45A	probably damaging	Het
Ppan	T	A	9: 20,891,154 (GRCm38)	V257E	possibly damaging	Het
Ptcra	C	G	17: 46,763,596 (GRCm38)	A7P	probably damaging	Het
Ptprd	C	T	4: 76,066,340 (GRCm38)	R523H	probably damaging	Het
Pycrl	A	T	15: 75,918,695 (GRCm38)	I105N	possibly damaging	Het
Rfx1	C	A	8: 84,095,079 (GRCm38)	Q815K	probably damaging	Het
Rfx3	T	A	19: 27,768,628 (GRCm38)	K668*	probably null	Het
Ryr2	A	G	13: 11,668,811 (GRCm38)		probably null	Het
Ryr2	A	T	13: 11,640,327 (GRCm38)	D3661E	possibly damaging	Het
Sec23ip	T	A	7: 128,779,640 (GRCm38)	S974T	probably damaging	Het
Setbp1	A	G	18: 79,086,960 (GRCm38)	F19S	probably benign	Het
Setd1a	AAGCAGCAGCAGCAGCAGCAG	AAGCAGCAGCAGCAGCAG	7: 127,796,418 (GRCm38)		probably benign	Het
Sh3pxd2b	A	G	11: 32,422,072 (GRCm38)	K413R	probably damaging	Het
Slc39a12	T	C	2: 14,449,803 (GRCm38)	V544A	probably damaging	Het
Slc6a7	T	C	18: 61,002,202 (GRCm38)	Y418C	probably damaging	Het
Snx19	T	G	9: 30,427,893 (GRCm38)	I109S	probably damaging	Het
Spg20	T	C	3: 55,121,799 (GRCm38)		probably null	Het
Sptbn2	A	T	19: 4,749,460 (GRCm38)	Q2097L	probably null	Het
Syne1	T	C	10: 5,228,221 (GRCm38)	K4751R	probably damaging	Het
Tigit	C	A	16: 43,662,252 (GRCm38)	G40C	probably damaging	Het
Tmem181a	T	A	17: 6,297,972 (GRCm38)	I264K	probably damaging	Het
Tom1	T	A	8: 75,057,249 (GRCm38)	I287N	possibly damaging	Het
Top2a	G	A	11: 99,004,182 (GRCm38)	P864L	possibly damaging	Het
Trmt44	A	T	5: 35,571,066 (GRCm38)	V290E	probably damaging	Het
Try4	T	C	6: 41,304,403 (GRCm38)	I93T	probably benign	Het
Usp24	T	A	4: 106,382,303 (GRCm38)	H1147Q	possibly damaging	Het
Uspl1	A	T	5: 149,193,935 (GRCm38)	R109S	probably benign	Het
Vav3	T	A	3: 109,664,346 (GRCm38)	F755I	probably damaging	Het
Vezt	A	T	10: 93,970,547 (GRCm38)	Y667*	probably null	Het
Vmn1r231	T	A	17: 20,889,878 (GRCm38)	L258F	possibly damaging	Het
Zfp207	T	C	11: 80,395,528 (GRCm38)	M489T	unknown	Het
Zfp462	A	G	4: 55,009,380 (GRCm38)	T449A	probably benign	Het
Zfp956	C	A	6: 47,955,847 (GRCm38)	Q19K	probably benign	Het
Zkscan8	A	T	13: 21,525,273 (GRCm38)	W152R	probably damaging	Het

Other mutations in Dctd

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01912:Dctd	APN	8	48,111,662 (GRCm38)	start gained	probably benign
R0194:Dctd	UTSW	8	48,112,078 (GRCm38)	missense	probably benign	0.01
R4871:Dctd	UTSW	8	48,137,414 (GRCm38)	intron	probably benign
R5007:Dctd	UTSW	8	48,137,414 (GRCm38)	intron	probably benign
R5008:Dctd	UTSW	8	48,137,414 (GRCm38)	intron	probably benign
R5009:Dctd	UTSW	8	48,137,414 (GRCm38)	intron	probably benign
R5010:Dctd	UTSW	8	48,137,414 (GRCm38)	intron	probably benign
R5083:Dctd	UTSW	8	48,111,716 (GRCm38)	missense	probably damaging	1.00
R5381:Dctd	UTSW	8	48,137,414 (GRCm38)	intron	probably benign
R5382:Dctd	UTSW	8	48,137,414 (GRCm38)	intron	probably benign
R8152:Dctd	UTSW	8	48,111,690 (GRCm38)	missense	probably benign
R8693:Dctd	UTSW	8	48,112,011 (GRCm38)	missense	probably damaging	1.00
R8739:Dctd	UTSW	8	48,138,848 (GRCm38)	missense	probably benign	0.00
R9009:Dctd	UTSW	8	48,111,677 (GRCm38)	missense	probably benign
R9408:Dctd	UTSW	8	48,137,350 (GRCm38)	missense	probably damaging	1.00
X0057:Dctd	UTSW	8	48,140,360 (GRCm38)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- GGGAGGATGTTCAGATATTGCTGA -3'
(R):5'- AGAGGGAGATAGGGTAGTTCACT -3'

Sequencing Primer
(F):5'- AATGGATAGTTTGGCAACTCAGAAC -3'
(R):5'- GAACTCTTTCAATCAACAGGC -3'

Posted On

2019-05-15