Mutagenetix > Incidental Mutation

Incidental Mutation 'R7256:Spata16'

564250

Institutional Source

Beutler Lab

Gene Symbol

Spata16

Ensembl Gene

ENSMUSG00000039335

Gene Name

spermatogenesis associated 16

Synonyms

4930503K02Rik, spermatogenesis-related protein, 4921511F01Rik, Nyd-sp12

MMRRC Submission

045317-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.089) question?

Stock #

R7256 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

26691769-27037361 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 26722016 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 179 (V179A)

Ref Sequence

ENSEMBL: ENSMUSP00000043378 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000047005] [ENSMUST00000108305]

AlphaFold

Q8C636

Predicted Effect

probably benign
Transcript: ENSMUST00000047005
AA Change: V179A

PolyPhen 2 Score 0.250 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000043378
Gene: ENSMUSG00000039335
AA Change: V179A

Domain	Start	End	E-Value	Type
Pfam:NYD-SP12_N	5	569	N/A	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000108305
AA Change: V179A

PolyPhen 2 Score 0.455 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000103941
Gene: ENSMUSG00000039335
AA Change: V179A

Domain	Start	End	E-Value	Type
Pfam:NYD-SP12_N	1	534	N/A	PFAM

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.0%

Validation Efficiency

99% (70/71)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a testis-specific protein that belongs to the tetratricopeptide repeat-like superfamily. The encoded protein localizes to the Golgi apparatus and may play a role in spermatogenesis. [provided by RefSeq, May 2010]

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adamts5	A	G	16: 85,659,923 (GRCm39)	Y790H	probably damaging	Het
Bend3	A	C	10: 43,369,667 (GRCm39)	S7R	probably benign	Het
Ccdc106	A	G	7: 5,063,325 (GRCm39)	T277A	probably damaging	Het
Ccdc162	G	A	10: 41,431,997 (GRCm39)	A1832V	probably damaging	Het
Ccser1	A	G	6: 61,288,851 (GRCm39)	E338G	probably benign	Het
Cd86	CA	CAA	16: 36,426,917 (GRCm39)		probably null	Het
Cecr2	T	C	6: 120,739,490 (GRCm39)	S1406P	probably benign	Het
Cep290	A	G	10: 100,382,360 (GRCm39)	T208A	probably damaging	Het
Cep85l	A	C	10: 53,172,351 (GRCm39)	C569W	probably damaging	Het
Ces5a	G	A	8: 94,226,154 (GRCm39)	T527I	probably benign	Het
Clca3a2	T	A	3: 144,796,608 (GRCm39)	I200F	probably damaging	Het
Cmas	G	A	6: 142,716,312 (GRCm39)	D251N	probably damaging	Het
Ctcfl	G	T	2: 172,960,268 (GRCm39)	A105E	probably benign	Het
Dclk2	C	T	3: 86,700,566 (GRCm39)	R638H	probably damaging	Het
Dctn6	A	T	8: 34,557,962 (GRCm39)	I170N	probably damaging	Het
Dnah2	T	C	11: 69,321,920 (GRCm39)	Y3800C	probably damaging	Het
Dsg2	G	A	18: 20,724,988 (GRCm39)	V465I	possibly damaging	Het
Dzip1	T	C	14: 119,123,058 (GRCm39)	T646A	probably benign	Het
Etv4	T	A	11: 101,675,151 (GRCm39)		probably null	Het
Exoc3l2	T	C	7: 19,218,628 (GRCm39)	V549A	unknown	Het
Ficd	G	T	5: 113,876,880 (GRCm39)	A352S	probably damaging	Het
Fry	T	G	5: 150,390,251 (GRCm39)	I179S		Het
Galntl5	A	G	5: 25,400,298 (GRCm39)	H109R	probably benign	Het
Garem1	C	A	18: 21,281,811 (GRCm39)	G182W	probably damaging	Het
Gm5916	A	T	9: 36,032,285 (GRCm39)	Y50N	possibly damaging	Het
Gtf2h2	A	T	13: 100,615,709 (GRCm39)	F271I	probably benign	Het
Hivep2	G	T	10: 14,004,845 (GRCm39)	S481I	probably benign	Het
Homez	T	A	14: 55,094,877 (GRCm39)	Q277L	probably damaging	Het
Hoxb4	C	A	11: 96,210,722 (GRCm39)		probably null	Het
Igll1	A	G	16: 16,678,957 (GRCm39)	S118P	probably damaging	Het
Ikzf2	A	C	1: 69,617,212 (GRCm39)		probably null	Het
Kif5b	A	G	18: 6,225,340 (GRCm39)	V230A	probably damaging	Het
Ldlr	T	A	9: 21,657,040 (GRCm39)	V719E	probably benign	Het
Lsm7	G	A	10: 80,689,565 (GRCm39)	R66W	possibly damaging	Het
Map3k13	T	A	16: 21,710,988 (GRCm39)	D90E	probably benign	Het
Mmrn1	A	G	6: 60,953,098 (GRCm39)	K460E	probably damaging	Het
Myh10	A	C	11: 68,681,515 (GRCm39)	N1061H	probably damaging	Het
Nepn	A	G	10: 52,277,089 (GRCm39)	Q275R	probably benign	Het
Noc3l	A	T	19: 38,800,800 (GRCm39)	D227E	probably benign	Het
Nploc4	G	T	11: 120,319,376 (GRCm39)	S61R	probably benign	Het
Nr4a2	T	C	2: 57,002,381 (GRCm39)	Y24C	probably damaging	Het
Nup160	T	A	2: 90,553,699 (GRCm39)	I1143N	probably damaging	Het
Or14a256	G	T	7: 86,264,873 (GRCm39)	H327N	probably benign	Het
Or4a15	A	T	2: 89,192,838 (GRCm39)	Y312N	probably benign	Het
Or8c17	T	A	9: 38,180,004 (GRCm39)	M57K	probably damaging	Het
Or8h7	A	G	2: 86,720,956 (GRCm39)	S188P	probably damaging	Het
Papola	T	A	12: 105,775,604 (GRCm39)	C204S	probably damaging	Het
Peg10	CCACATCAGGATCCACATCAGGATGCACATCAGCATCAGGATCCCCATCAGGATGCACATCAGGATCCACATCAGGATGCACATCAG	CCACATCAGGATCCACATCAGGATGCACATCAG	6: 4,756,398 (GRCm39)		probably benign	Het
Pgap1	A	T	1: 54,532,366 (GRCm39)		probably null	Het
Pitrm1	A	G	13: 6,606,633 (GRCm39)	H229R	probably damaging	Het
Plcl1	A	G	1: 55,737,377 (GRCm39)	Q906R	probably benign	Het
Ppfia3	T	C	7: 44,991,167 (GRCm39)	N1018S	probably benign	Het
Pramel24	T	A	4: 143,452,849 (GRCm39)	D93E	probably benign	Het
Prkd1	A	G	12: 50,435,125 (GRCm39)	V534A	possibly damaging	Het
Pygm	A	T	19: 6,435,926 (GRCm39)	I126F	probably benign	Het
Rag1	T	C	2: 101,472,415 (GRCm39)	Y909C	probably damaging	Het
Rasgrf2	G	A	13: 92,032,637 (GRCm39)	Q560*	probably null	Het
Rbp3	A	T	14: 33,684,540 (GRCm39)	I1190F	possibly damaging	Het
Reln	T	C	5: 22,183,921 (GRCm39)	K1693E	probably benign	Het
Rgl2	T	C	17: 34,153,964 (GRCm39)	F457L	possibly damaging	Het
Rsph3a	A	G	17: 8,165,002 (GRCm39)	T121A	probably benign	Het
Rufy3	A	G	5: 88,762,806 (GRCm39)	N112S	possibly damaging	Het
Ryr3	G	A	2: 112,502,591 (GRCm39)	Q3548*	probably null	Het
Sardh	A	T	2: 27,108,824 (GRCm39)	V637D	probably benign	Het
Spopfm2	T	C	3: 94,083,667 (GRCm39)	E48G	probably benign	Het
Tbc1d30	G	A	10: 121,124,870 (GRCm39)	T319I	probably damaging	Het
Tlr2	T	A	3: 83,744,913 (GRCm39)	Q390L	possibly damaging	Het
Tmem53	C	T	4: 117,109,237 (GRCm39)		probably null	Het
Vmn1r113	T	A	7: 20,521,370 (GRCm39)	I54N	probably damaging	Het
Vmn1r223	A	C	13: 23,434,036 (GRCm39)	Y210S	probably damaging	Het
Zbbx	A	T	3: 74,947,205 (GRCm39)	H670Q	probably benign	Het

Other mutations in Spata16

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00835:Spata16	APN	3	26,978,411 (GRCm39)	missense	probably damaging	0.98
IGL01017:Spata16	APN	3	26,894,871 (GRCm39)	missense	possibly damaging	0.93
IGL01129:Spata16	APN	3	26,967,333 (GRCm39)	splice site	probably benign
IGL01330:Spata16	APN	3	26,968,864 (GRCm39)	missense	probably damaging	0.99
IGL02033:Spata16	APN	3	26,967,483 (GRCm39)	critical splice donor site	probably null
IGL02069:Spata16	APN	3	26,786,944 (GRCm39)	nonsense	probably null
IGL02231:Spata16	APN	3	26,967,413 (GRCm39)	missense	probably damaging	1.00
R0084:Spata16	UTSW	3	26,721,559 (GRCm39)	missense	possibly damaging	0.95
R0109:Spata16	UTSW	3	26,967,416 (GRCm39)	missense	probably damaging	0.97
R0109:Spata16	UTSW	3	26,967,416 (GRCm39)	missense	probably damaging	0.97
R0325:Spata16	UTSW	3	26,721,605 (GRCm39)	missense	probably damaging	0.98
R0811:Spata16	UTSW	3	26,967,487 (GRCm39)	splice site	probably benign
R2061:Spata16	UTSW	3	26,978,519 (GRCm39)	missense	probably damaging	0.99
R3148:Spata16	UTSW	3	26,932,861 (GRCm39)	critical splice donor site	probably null
R4837:Spata16	UTSW	3	26,787,081 (GRCm39)	missense	possibly damaging	0.93
R4972:Spata16	UTSW	3	26,894,872 (GRCm39)	missense	possibly damaging	0.93
R5129:Spata16	UTSW	3	26,721,713 (GRCm39)	missense	probably damaging	0.98
R5235:Spata16	UTSW	3	26,721,781 (GRCm39)	missense	probably benign	0.00
R5458:Spata16	UTSW	3	26,831,686 (GRCm39)	missense	probably damaging	0.99
R6578:Spata16	UTSW	3	26,721,697 (GRCm39)	nonsense	probably null
R7069:Spata16	UTSW	3	26,981,483 (GRCm39)	missense	probably damaging	0.99
R7936:Spata16	UTSW	3	26,721,572 (GRCm39)	missense	possibly damaging	0.71
R8015:Spata16	UTSW	3	26,721,808 (GRCm39)	missense	probably benign
R8060:Spata16	UTSW	3	26,894,869 (GRCm39)	missense	probably damaging	0.99
R8161:Spata16	UTSW	3	26,894,811 (GRCm39)	missense	probably benign	0.16
R8459:Spata16	UTSW	3	26,721,676 (GRCm39)	missense	probably benign
R9215:Spata16	UTSW	3	26,721,994 (GRCm39)	nonsense	probably null
R9249:Spata16	UTSW	3	26,787,030 (GRCm39)	missense	possibly damaging	0.92
R9413:Spata16	UTSW	3	26,978,486 (GRCm39)	missense	possibly damaging	0.71
R9512:Spata16	UTSW	3	26,722,093 (GRCm39)	missense	possibly damaging	0.81
R9613:Spata16	UTSW	3	26,932,814 (GRCm39)	missense	probably damaging	0.99
R9690:Spata16	UTSW	3	26,967,432 (GRCm39)	missense	probably damaging	1.00
R9797:Spata16	UTSW	3	26,968,925 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- TCAGCTAGTCACCACCGTAC -3'
(R):5'- CCATGACCACTGTTCATTACATTG -3'

Sequencing Primer
(F):5'- CATCCCCTTAAAGAACATAATGGATG -3'
(R):5'- CATTACATTGTGGCGAGAACC -3'

Posted On

2019-06-26