Mutagenetix > Incidental Mutation

Incidental Mutation 'R7325:Zfp583'

568816

Institutional Source

Beutler Lab

Gene Symbol

Zfp583

Ensembl Gene

ENSMUSG00000030443

Gene Name

zinc finger protein 583

Synonyms

MMRRC Submission

045419-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.087) question?

Stock #

R7325 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

6318659-6334284 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 6319585 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Alanine to Threonine at position 476 (A476T)

Ref Sequence

ENSEMBL: ENSMUSP00000053935 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000062765] [ENSMUST00000108560] [ENSMUST00000165705]

AlphaFold

Q3V080

Predicted Effect

probably damaging
Transcript: ENSMUST00000062765
AA Change: A476T

PolyPhen 2 Score 0.992 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000053935
Gene: ENSMUSG00000030443
AA Change: A476T

Domain	Start	End	E-Value	Type
KRAB	6	66	7.45e-32	SMART
ZnF_C2H2	211	233	2.09e-3	SMART
ZnF_C2H2	239	261	3.89e-3	SMART
ZnF_C2H2	267	289	2.95e-3	SMART
ZnF_C2H2	295	317	1.2e-3	SMART
ZnF_C2H2	323	345	7.26e-3	SMART
ZnF_C2H2	351	373	2.61e-4	SMART
ZnF_C2H2	379	401	2.75e-3	SMART
ZnF_C2H2	407	429	2.57e-3	SMART
ZnF_C2H2	435	457	2.09e-3	SMART
ZnF_C2H2	463	485	1.58e-3	SMART
ZnF_C2H2	491	513	3.44e-4	SMART
ZnF_C2H2	519	541	1.36e-2	SMART
low complexity region	545	561	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000108560
AA Change: A476T

PolyPhen 2 Score 0.992 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000104200
Gene: ENSMUSG00000030443
AA Change: A476T

Domain	Start	End	E-Value	Type
KRAB	6	66	7.45e-32	SMART
ZnF_C2H2	211	233	2.09e-3	SMART
ZnF_C2H2	239	261	3.89e-3	SMART
ZnF_C2H2	267	289	2.95e-3	SMART
ZnF_C2H2	295	317	1.2e-3	SMART
ZnF_C2H2	323	345	7.26e-3	SMART
ZnF_C2H2	351	373	2.61e-4	SMART
ZnF_C2H2	379	401	2.75e-3	SMART
ZnF_C2H2	407	429	2.57e-3	SMART
ZnF_C2H2	435	457	2.09e-3	SMART
ZnF_C2H2	463	485	1.58e-3	SMART
ZnF_C2H2	491	513	3.44e-4	SMART
ZnF_C2H2	519	541	1.36e-2	SMART
low complexity region	545	561	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000165705
AA Change: A476T

PolyPhen 2 Score 0.992 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000129551
Gene: ENSMUSG00000030443
AA Change: A476T

Domain	Start	End	E-Value	Type
KRAB	6	66	7.45e-32	SMART
ZnF_C2H2	211	233	2.09e-3	SMART
ZnF_C2H2	239	261	3.89e-3	SMART
ZnF_C2H2	267	289	2.95e-3	SMART
ZnF_C2H2	295	317	1.2e-3	SMART
ZnF_C2H2	323	345	7.26e-3	SMART
ZnF_C2H2	351	373	2.61e-4	SMART
ZnF_C2H2	379	401	2.75e-3	SMART
ZnF_C2H2	407	429	2.57e-3	SMART
ZnF_C2H2	435	457	2.09e-3	SMART
ZnF_C2H2	463	485	1.58e-3	SMART
ZnF_C2H2	491	513	3.44e-4	SMART
ZnF_C2H2	519	541	1.36e-2	SMART
low complexity region	545	561	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.1%

Validation Efficiency

100% (62/62)

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adgrb3	T	A	1: 25,571,711 (GRCm39)	Q402L	probably benign	Het
Afap1l1	T	C	18: 61,869,917 (GRCm39)	T638A	probably benign	Het
Agtr1a	A	C	13: 30,565,890 (GRCm39)	K318N	possibly damaging	Het
Anks1b	A	G	10: 90,777,294 (GRCm39)	T1095A	probably damaging	Het
Ap3d1	A	T	10: 80,559,637 (GRCm39)	I207N	probably damaging	Het
Arhgef11	T	C	3: 87,620,599 (GRCm39)	L484P	possibly damaging	Het
Astn2	C	T	4: 65,460,906 (GRCm39)	S1076N	probably benign	Het
Baat	C	A	4: 49,490,213 (GRCm39)	L290F	probably benign	Het
Boll	T	C	1: 55,343,757 (GRCm39)	Y222C	probably damaging	Het
Bphl	A	T	13: 34,234,324 (GRCm39)	I147F	possibly damaging	Het
Cadps2	T	G	6: 23,409,934 (GRCm39)	D766A	unknown	Het
Cd300lb	T	A	11: 114,815,858 (GRCm39)	K210M	probably damaging	Het
Cdan1	T	C	2: 120,555,185 (GRCm39)	Q797R	probably benign	Het
Celsr1	T	A	15: 85,917,209 (GRCm39)	S255C	probably damaging	Het
Cfap91	T	A	16: 38,141,963 (GRCm39)		probably null	Het
Cip2a	T	A	16: 48,826,184 (GRCm39)	M417K	probably benign	Het
Csmd1	G	A	8: 16,108,721 (GRCm39)	S1894L	probably damaging	Het
Dennd5b	T	A	6: 148,922,068 (GRCm39)	K815N	probably benign	Het
Exd1	A	G	2: 119,350,620 (GRCm39)	V547A	probably benign	Het
Fbxo15	C	T	18: 84,977,243 (GRCm39)	R52C	probably damaging	Het
Fip1l1	A	G	5: 74,697,460 (GRCm39)		probably null	Het
Flg2	T	A	3: 93,110,679 (GRCm39)	N902K	unknown	Het
Fyttd1	T	A	16: 32,704,618 (GRCm39)	N76K	probably benign	Het
Gins1	T	A	2: 150,758,086 (GRCm39)	D57E	probably benign	Het
Gm5565	G	C	5: 146,095,171 (GRCm39)		probably null	Het
Gpsm2	T	C	3: 108,610,244 (GRCm39)	Y72C	probably damaging	Het
Hace1	C	A	10: 45,465,603 (GRCm39)	S53*	probably null	Het
Insig2	A	G	1: 121,234,666 (GRCm39)	V188A	possibly damaging	Het
Ism1	T	C	2: 139,598,963 (GRCm39)	V312A	probably damaging	Het
Jmy	A	T	13: 93,609,251 (GRCm39)	Y353N	probably damaging	Het
Maz	A	C	7: 126,624,725 (GRCm39)	V265G	probably benign	Het
Mtmr14	T	A	6: 113,246,509 (GRCm39)	I426N	probably damaging	Het
Or1e34	C	T	11: 73,779,101 (GRCm39)	M32I	probably benign	Het
Or5b113	A	G	19: 13,342,001 (GRCm39)	E3G	probably benign	Het
Or8k22	A	G	2: 86,163,344 (GRCm39)	S119P	possibly damaging	Het
Pcdhac2	T	A	18: 37,278,413 (GRCm39)	N464K	probably damaging	Het
Pcdhb7	T	A	18: 37,476,440 (GRCm39)	H525Q	probably benign	Het
Pcp4l1	G	A	1: 171,002,034 (GRCm39)	A42V	possibly damaging	Het
Podn	C	T	4: 107,874,899 (GRCm39)		probably null	Het
Prim1	A	G	10: 127,858,788 (GRCm39)	D232G	probably null	Het
Prrt1	T	A	17: 34,851,161 (GRCm39)	M283K	possibly damaging	Het
Rgs9	A	T	11: 109,167,407 (GRCm39)	I65N	probably damaging	Het
Scgb2b26	C	A	7: 33,643,782 (GRCm39)	V53L	probably benign	Het
Shank2	C	A	7: 143,965,422 (GRCm39)	P1010Q	probably benign	Het
Slc12a4	C	T	8: 106,682,347 (GRCm39)	G121S	probably damaging	Het
Slc17a6	G	T	7: 51,294,766 (GRCm39)	A158S	probably damaging	Het
Slc9a9	C	T	9: 94,594,951 (GRCm39)	H154Y	probably benign	Het
Slco1a8	T	C	6: 141,934,951 (GRCm39)	K379E	probably damaging	Het
Slco2a1	T	A	9: 102,962,948 (GRCm39)		probably null	Het
Snapc3	T	C	4: 83,353,507 (GRCm39)	I182T	probably benign	Het
Taok2	A	G	7: 126,470,260 (GRCm39)	V856A	probably benign	Het
Tep1	T	A	14: 51,103,495 (GRCm39)	N265I	probably damaging	Het
Tespa1	A	T	10: 130,197,910 (GRCm39)	N311Y	probably damaging	Het
Tpmt	G	A	13: 47,194,960 (GRCm39)	Q14*	probably null	Het
Trim33	T	C	3: 103,228,952 (GRCm39)	F353L	possibly damaging	Het
Upp1	T	C	11: 9,084,743 (GRCm39)	V154A	probably damaging	Het
Usp34	T	C	11: 23,369,052 (GRCm39)	I1747T		Het
Vmn1r47	T	C	6: 89,999,254 (GRCm39)	S129P	probably benign	Het
Vmn2r93	A	G	17: 18,524,249 (GRCm39)	Y81C	probably benign	Het
Ybx2	A	T	11: 69,831,181 (GRCm39)	T259S	probably benign	Het
Zfp536	T	C	7: 37,179,285 (GRCm39)	T1107A	probably benign	Het

Other mutations in Zfp583

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01084:Zfp583	APN	7	6,320,184 (GRCm39)	missense	probably damaging	1.00
IGL01921:Zfp583	APN	7	6,328,569 (GRCm39)	missense	possibly damaging	0.95
R1593:Zfp583	UTSW	7	6,320,008 (GRCm39)	missense	probably benign	0.03
R2188:Zfp583	UTSW	7	6,320,610 (GRCm39)	missense	probably benign
R4377:Zfp583	UTSW	7	6,320,680 (GRCm39)	missense	possibly damaging	0.61
R5000:Zfp583	UTSW	7	6,328,473 (GRCm39)	missense	probably damaging	1.00
R5031:Zfp583	UTSW	7	6,320,397 (GRCm39)	missense	probably benign
R5723:Zfp583	UTSW	7	6,326,674 (GRCm39)	missense	probably damaging	0.98
R6603:Zfp583	UTSW	7	6,328,475 (GRCm39)	missense	probably damaging	1.00
R7391:Zfp583	UTSW	7	6,319,498 (GRCm39)	missense	probably damaging	1.00
R7673:Zfp583	UTSW	7	6,320,009 (GRCm39)	missense	possibly damaging	0.91
R8035:Zfp583	UTSW	7	6,319,771 (GRCm39)	missense	probably damaging	1.00
R8127:Zfp583	UTSW	7	6,326,821 (GRCm39)	splice site	probably null
R8331:Zfp583	UTSW	7	6,320,554 (GRCm39)	missense	probably benign
R8732:Zfp583	UTSW	7	6,320,210 (GRCm39)	nonsense	probably null
R8748:Zfp583	UTSW	7	6,319,419 (GRCm39)	missense	probably benign	0.01
R9011:Zfp583	UTSW	7	6,319,627 (GRCm39)	missense	probably damaging	1.00
R9016:Zfp583	UTSW	7	6,320,404 (GRCm39)	missense	probably benign	0.28
R9038:Zfp583	UTSW	7	6,319,543 (GRCm39)	missense	probably damaging	1.00
R9075:Zfp583	UTSW	7	6,319,870 (GRCm39)	missense	probably damaging	1.00
R9346:Zfp583	UTSW	7	6,328,542 (GRCm39)	missense	probably benign	0.01
R9652:Zfp583	UTSW	7	6,320,328 (GRCm39)	missense	probably damaging	1.00
RF024:Zfp583	UTSW	7	6,319,981 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- ACTTTCTCATGATGAGCAAGATGTG -3'
(R):5'- TGCATACTGGAGAGAAACCGTATG -3'

Sequencing Primer
(F):5'- AAGATGTGCACGCTGCCTG -3'
(R):5'- GCGTTCAGCCAGGTTGCTTAC -3'

Posted On

2019-09-13