Incidental Mutation 'R9667:Fancd2'
ID 727846
Institutional Source Beutler Lab
Gene Symbol Fancd2
Ensembl Gene ENSMUSG00000034023
Gene Name Fanconi anemia, complementation group D2
Synonyms 2410150O07Rik
MMRRC Submission
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R9667 (G1)
Quality Score 225.009
Status Not validated
Chromosome 6
Chromosomal Location 113508643-113573978 bp(+) (GRCm39)
Type of Mutation nonsense
DNA Base Change (assembly) T to A at 113530717 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Leucine to Stop codon at position 450 (L450*)
Ref Sequence ENSEMBL: ENSMUSP00000045667 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000036340] [ENSMUST00000204827]
AlphaFold Q80V62
PDB Structure Structure of the FANCI-FANCD2 complex [X-RAY DIFFRACTION]
Predicted Effect probably null
Transcript: ENSMUST00000036340
AA Change: L450*
SMART Domains Protein: ENSMUSP00000045667
Gene: ENSMUSG00000034023
AA Change: L450*

DomainStartEndE-ValueType
Pfam:FancD2 1 1415 N/A PFAM
low complexity region 1430 1450 N/A INTRINSIC
Predicted Effect probably null
Transcript: ENSMUST00000123738
AA Change: L51*
SMART Domains Protein: ENSMUSP00000122091
Gene: ENSMUSG00000034023
AA Change: L51*

DomainStartEndE-ValueType
Pfam:FancD2 1 246 5.7e-116 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000204827
AA Change: L450*
SMART Domains Protein: ENSMUSP00000144928
Gene: ENSMUSG00000034023
AA Change: L450*

DomainStartEndE-ValueType
Pfam:FancD2 1 1402 N/A PFAM
low complexity region 1417 1437 N/A INTRINSIC
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.7%
  • 20x: 98.8%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The Fanconi anemia complementation group (FANC) currently includes FANCA, FANCB, FANCC, FANCD1 (also called BRCA2), FANCD2, FANCE, FANCF, FANCG, FANCI, FANCJ (also called BRIP1), FANCL, FANCM and FANCN (also called PALB2). The previously defined group FANCH is the same as FANCA. Fanconi anemia is a genetically heterogeneous recessive disorder characterized by cytogenetic instability, hypersensitivity to DNA crosslinking agents, increased chromosomal breakage, and defective DNA repair. The members of the Fanconi anemia complementation group do not share sequence similarity; they are related by their assembly into a common nuclear protein complex. This gene encodes the protein for complementation group D2. This protein is monoubiquinated in response to DNA damage, resulting in its localization to nuclear foci with other proteins (BRCA1 AND BRCA2) involved in homology-directed DNA repair. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2016]
PHENOTYPE: Homozygous mutant mice exhibit defects observed in human patients with Fanconi anemia (FA) meiotic defects and germ cell loss. In addition, mutant mice display perinatal lethality, susceptiblity ot epithelial cancer, and microphthalmia. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 88 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930563M21Rik G A 9: 55,890,645 (GRCm39) Q355* probably null Het
Aacs A T 5: 125,580,691 (GRCm39) N255I possibly damaging Het
Abcf2 A G 5: 24,779,185 (GRCm39) L121P probably damaging Het
Amigo1 A G 3: 108,095,034 (GRCm39) I178V probably benign Het
Ankrd13a T A 5: 114,933,793 (GRCm39) N262K probably damaging Het
Apba2 A G 7: 64,345,062 (GRCm39) E84G possibly damaging Het
Arhgap35 A T 7: 16,296,914 (GRCm39) L717* probably null Het
Aspa A T 11: 73,199,625 (GRCm39) C217* probably null Het
Atp5mc3 A G 2: 73,739,567 (GRCm39) I91T probably damaging Het
Birc6 T C 17: 75,004,420 (GRCm39) M4763T possibly damaging Het
Cc2d2b A G 19: 40,753,927 (GRCm39) Y150C unknown Het
Ccdc180 C T 4: 45,920,861 (GRCm39) Q936* probably null Het
Cdc42bpg A G 19: 6,370,115 (GRCm39) E1103G probably benign Het
Cdca2 T C 14: 67,915,003 (GRCm39) Q752R probably benign Het
Ces1b A T 8: 93,791,637 (GRCm39) S321T probably benign Het
Cfap70 A T 14: 20,490,690 (GRCm39) probably null Het
Cpox C T 16: 58,490,984 (GRCm39) T65I possibly damaging Het
Crocc C T 4: 140,748,988 (GRCm39) E1606K probably damaging Het
Cryzl2 T G 1: 157,316,038 (GRCm39) M337R probably benign Het
Cyp4a29 C A 4: 115,111,630 (GRCm39) A469D probably damaging Het
Dnaaf1 T A 8: 120,306,043 (GRCm39) Y107N possibly damaging Het
Dpp6 T A 5: 27,930,604 (GRCm39) I812N probably damaging Het
Elovl5 A G 9: 77,889,947 (GRCm39) T253A possibly damaging Het
Fbxo31 C T 8: 122,305,208 (GRCm39) R96H probably damaging Het
Gls A T 1: 52,230,036 (GRCm39) probably null Het
Gm3045 G A 13: 56,577,253 (GRCm39) E134K possibly damaging Het
Gpr158 A G 2: 21,830,054 (GRCm39) I700V probably damaging Het
H2-Aa T C 17: 34,502,295 (GRCm39) I209V probably benign Het
Ifnar2 A G 16: 91,184,984 (GRCm39) D125G probably benign Het
Igsf8 C A 1: 172,145,319 (GRCm39) D278E possibly damaging Het
Inpp5d T C 1: 87,623,128 (GRCm39) I407T probably damaging Het
Iqcd A G 5: 120,744,737 (GRCm39) E355G probably damaging Het
Klra2 T A 6: 131,219,836 (GRCm39) D115V probably benign Het
Kmt2b T C 7: 30,287,784 (GRCm39) E120G unknown Het
Lhx6 A G 2: 35,980,979 (GRCm39) I321T possibly damaging Het
Lmna CAGCACGGTGCGTGAGC CAGC 3: 88,389,857 (GRCm39) probably null Het
Lztr1 T C 16: 17,327,000 (GRCm39) Y37H probably damaging Het
Malrd1 A T 2: 15,570,026 (GRCm39) probably null Het
Mtmr3 C T 11: 4,470,890 (GRCm39) V79I probably damaging Het
Nbr1 A G 11: 101,451,261 (GRCm39) I56M possibly damaging Het
Ncor2 C T 5: 125,125,545 (GRCm39) A580T unknown Het
Ndst3 A G 3: 123,353,866 (GRCm39) I601T possibly damaging Het
Nectin4 C A 1: 171,210,165 (GRCm39) P219Q probably damaging Het
Nfatc4 T C 14: 56,066,964 (GRCm39) V501A probably benign Het
Nisch T C 14: 30,895,646 (GRCm39) T1015A probably damaging Het
Nr2c1 T C 10: 94,017,479 (GRCm39) probably null Het
Nrg2 T C 18: 36,165,430 (GRCm39) E394G probably benign Het
Oas1e A G 5: 120,932,347 (GRCm39) F99L probably benign Het
Oaz3 A T 3: 94,341,835 (GRCm39) Y178* probably null Het
Or1e35 A G 11: 73,798,097 (GRCm39) S74P possibly damaging Het
Or6c69b A C 10: 129,627,022 (GRCm39) S145R probably damaging Het
Pcdhb20 C T 18: 37,637,839 (GRCm39) H122Y probably benign Het
Pdcd2 T A 17: 15,747,535 (GRCm39) M1L probably damaging Het
Phf11 T C 14: 59,482,240 (GRCm39) N171S probably benign Het
Plcd1 C A 9: 118,901,698 (GRCm39) G609W probably damaging Het
Plscr3 T C 11: 69,738,631 (GRCm39) F98L probably benign Het
Ppp1r8 T C 4: 132,570,407 (GRCm39) N6S probably benign Het
Prpf38b G A 3: 108,818,859 (GRCm39) probably benign Het
Rin2 T A 2: 145,702,202 (GRCm39) N299K possibly damaging Het
Serpina1d T G 12: 103,734,299 (GRCm39) T2P probably benign Het
Slc22a16 A G 10: 40,461,125 (GRCm39) D330G probably benign Het
Slit1 G A 19: 41,731,832 (GRCm39) Q6* probably null Het
Spaca7b T A 8: 11,705,681 (GRCm39) E142V probably benign Het
Spag9 T C 11: 93,887,119 (GRCm39) V8A possibly damaging Het
Spsb3 C T 17: 25,105,784 (GRCm39) T44I unknown Het
Srrt T C 5: 137,295,732 (GRCm39) Y563C probably damaging Het
Syne2 A G 12: 75,926,951 (GRCm39) D69G probably damaging Het
Tcf12 A G 9: 71,792,443 (GRCm39) V80A probably benign Het
Tdpoz3 G A 3: 93,733,336 (GRCm39) D4N possibly damaging Het
Tekt2 C T 4: 126,217,444 (GRCm39) R207H probably damaging Het
Tmem132d G A 5: 128,061,375 (GRCm39) T409I possibly damaging Het
Tmem245 G T 4: 56,947,119 (GRCm39) T98K probably damaging Het
Tmem70 A C 1: 16,735,659 (GRCm39) E43A probably benign Het
Trim25 A T 11: 88,907,188 (GRCm39) I516F probably damaging Het
Trim3 G A 7: 105,267,455 (GRCm39) S308L possibly damaging Het
Ttll9 C T 2: 152,831,989 (GRCm39) R189* probably null Het
Ttpal T C 2: 163,449,596 (GRCm39) probably null Het
Ubl4b A T 3: 107,461,911 (GRCm39) H116Q probably benign Het
Unc80 C A 1: 66,651,287 (GRCm39) T1544K possibly damaging Het
Usp2 T C 9: 44,003,487 (GRCm39) probably null Het
Usp25 T C 16: 76,874,123 (GRCm39) probably null Het
Vmn1r167 C T 7: 23,204,990 (GRCm39) V9I probably benign Het
Vmn2r87 A G 10: 130,314,776 (GRCm39) I270T probably damaging Het
Vps35l G A 7: 118,348,915 (GRCm39) probably null Het
Wdr24 A G 17: 26,046,301 (GRCm39) D515G possibly damaging Het
Wdr81 T C 11: 75,341,650 (GRCm39) T87A Het
Zcchc14 A T 8: 122,331,863 (GRCm39) L500Q unknown Het
Zzef1 A G 11: 72,758,786 (GRCm39) T1242A probably benign Het
Other mutations in Fancd2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00401:Fancd2 APN 6 113,541,357 (GRCm39) critical splice donor site probably null
IGL00475:Fancd2 APN 6 113,545,571 (GRCm39) missense probably benign 0.01
IGL01319:Fancd2 APN 6 113,561,860 (GRCm39) missense probably damaging 0.98
IGL01339:Fancd2 APN 6 113,530,713 (GRCm39) missense probably benign 0.00
IGL01373:Fancd2 APN 6 113,530,713 (GRCm39) missense probably benign 0.00
IGL01393:Fancd2 APN 6 113,554,321 (GRCm39) splice site probably benign
IGL01630:Fancd2 APN 6 113,540,085 (GRCm39) missense probably damaging 1.00
IGL01769:Fancd2 APN 6 113,522,072 (GRCm39) missense possibly damaging 0.90
IGL01882:Fancd2 APN 6 113,523,601 (GRCm39) missense probably benign 0.05
IGL02029:Fancd2 APN 6 113,547,936 (GRCm39) missense probably benign 0.44
IGL02224:Fancd2 APN 6 113,545,281 (GRCm39) critical splice donor site probably null
IGL02271:Fancd2 APN 6 113,512,720 (GRCm39) splice site probably benign
IGL02352:Fancd2 APN 6 113,540,073 (GRCm39) missense probably damaging 1.00
IGL02359:Fancd2 APN 6 113,540,073 (GRCm39) missense probably damaging 1.00
IGL02427:Fancd2 APN 6 113,526,313 (GRCm39) splice site probably null
IGL02512:Fancd2 APN 6 113,547,904 (GRCm39) missense probably damaging 1.00
IGL02530:Fancd2 APN 6 113,539,422 (GRCm39) missense probably damaging 1.00
IGL02801:Fancd2 APN 6 113,570,278 (GRCm39) missense probably benign 0.00
IGL03090:Fancd2 APN 6 113,514,558 (GRCm39) splice site probably null
IGL03247:Fancd2 APN 6 113,545,169 (GRCm39) missense probably benign 0.03
R0278:Fancd2 UTSW 6 113,525,409 (GRCm39) critical splice donor site probably null
R0401:Fancd2 UTSW 6 113,525,304 (GRCm39) missense possibly damaging 0.46
R0420:Fancd2 UTSW 6 113,513,940 (GRCm39) missense probably damaging 0.98
R0496:Fancd2 UTSW 6 113,532,091 (GRCm39) splice site probably benign
R0762:Fancd2 UTSW 6 113,551,619 (GRCm39) missense probably benign 0.20
R0827:Fancd2 UTSW 6 113,563,210 (GRCm39) critical splice donor site probably null
R1225:Fancd2 UTSW 6 113,512,822 (GRCm39) missense probably damaging 0.99
R1576:Fancd2 UTSW 6 113,555,366 (GRCm39) missense probably damaging 0.98
R2010:Fancd2 UTSW 6 113,570,252 (GRCm39) missense probably damaging 0.96
R2079:Fancd2 UTSW 6 113,532,148 (GRCm39) missense probably damaging 1.00
R2118:Fancd2 UTSW 6 113,537,035 (GRCm39) splice site probably benign
R2141:Fancd2 UTSW 6 113,526,282 (GRCm39) missense probably benign 0.00
R2168:Fancd2 UTSW 6 113,568,120 (GRCm39) missense possibly damaging 0.92
R2180:Fancd2 UTSW 6 113,551,598 (GRCm39) missense probably benign 0.33
R3016:Fancd2 UTSW 6 113,513,687 (GRCm39) missense probably benign 0.00
R3153:Fancd2 UTSW 6 113,570,230 (GRCm39) missense possibly damaging 0.55
R3154:Fancd2 UTSW 6 113,570,230 (GRCm39) missense possibly damaging 0.55
R3783:Fancd2 UTSW 6 113,542,165 (GRCm39) missense probably damaging 1.00
R3786:Fancd2 UTSW 6 113,542,165 (GRCm39) missense probably damaging 1.00
R3787:Fancd2 UTSW 6 113,542,165 (GRCm39) missense probably damaging 1.00
R4379:Fancd2 UTSW 6 113,538,677 (GRCm39) missense probably benign 0.00
R4388:Fancd2 UTSW 6 113,533,329 (GRCm39) missense probably damaging 0.99
R4544:Fancd2 UTSW 6 113,549,603 (GRCm39) critical splice acceptor site probably null
R4598:Fancd2 UTSW 6 113,562,438 (GRCm39) missense probably benign 0.06
R4832:Fancd2 UTSW 6 113,530,683 (GRCm39) missense probably benign 0.16
R4841:Fancd2 UTSW 6 113,539,391 (GRCm39) missense probably damaging 1.00
R4922:Fancd2 UTSW 6 113,562,434 (GRCm39) missense probably benign 0.03
R5375:Fancd2 UTSW 6 113,545,673 (GRCm39) missense possibly damaging 0.93
R5579:Fancd2 UTSW 6 113,537,012 (GRCm39) critical splice acceptor site probably null
R5782:Fancd2 UTSW 6 113,525,833 (GRCm39) missense probably benign 0.00
R5871:Fancd2 UTSW 6 113,533,243 (GRCm39) missense probably benign 0.30
R5901:Fancd2 UTSW 6 113,526,326 (GRCm39) missense probably damaging 1.00
R5909:Fancd2 UTSW 6 113,538,672 (GRCm39) missense probably benign
R6026:Fancd2 UTSW 6 113,528,731 (GRCm39) missense possibly damaging 0.46
R6166:Fancd2 UTSW 6 113,532,212 (GRCm39) missense possibly damaging 0.67
R6393:Fancd2 UTSW 6 113,555,374 (GRCm39) missense probably benign 0.01
R6666:Fancd2 UTSW 6 113,562,470 (GRCm39) missense probably damaging 0.96
R6669:Fancd2 UTSW 6 113,570,288 (GRCm39) missense probably benign 0.00
R6676:Fancd2 UTSW 6 113,514,626 (GRCm39) nonsense probably null
R6762:Fancd2 UTSW 6 113,562,977 (GRCm39) splice site probably null
R6911:Fancd2 UTSW 6 113,525,346 (GRCm39) missense probably damaging 0.98
R6992:Fancd2 UTSW 6 113,547,979 (GRCm39) critical splice donor site probably null
R7091:Fancd2 UTSW 6 113,522,062 (GRCm39) missense probably damaging 1.00
R7252:Fancd2 UTSW 6 113,533,246 (GRCm39) missense probably damaging 0.98
R7343:Fancd2 UTSW 6 113,513,900 (GRCm39) missense probably benign 0.01
R7344:Fancd2 UTSW 6 113,545,670 (GRCm39) missense probably benign 0.09
R7354:Fancd2 UTSW 6 113,572,907 (GRCm39) missense unknown
R7489:Fancd2 UTSW 6 113,541,265 (GRCm39) missense probably benign
R7501:Fancd2 UTSW 6 113,525,364 (GRCm39) missense possibly damaging 0.95
R7504:Fancd2 UTSW 6 113,521,999 (GRCm39) missense probably damaging 1.00
R7992:Fancd2 UTSW 6 113,542,165 (GRCm39) missense probably damaging 1.00
R8027:Fancd2 UTSW 6 113,523,583 (GRCm39) missense probably damaging 1.00
R8487:Fancd2 UTSW 6 113,545,187 (GRCm39) missense probably damaging 1.00
R8509:Fancd2 UTSW 6 113,549,531 (GRCm39) missense probably benign 0.00
R8757:Fancd2 UTSW 6 113,537,054 (GRCm39) missense possibly damaging 0.91
R8960:Fancd2 UTSW 6 113,540,129 (GRCm39) critical splice donor site probably null
R8978:Fancd2 UTSW 6 113,562,507 (GRCm39) splice site probably benign
R9110:Fancd2 UTSW 6 113,512,762 (GRCm39) missense possibly damaging 0.94
R9116:Fancd2 UTSW 6 113,532,180 (GRCm39) missense probably benign 0.00
R9490:Fancd2 UTSW 6 113,555,416 (GRCm39) missense probably damaging 0.98
Z1088:Fancd2 UTSW 6 113,558,383 (GRCm39) missense probably benign 0.00
Z1177:Fancd2 UTSW 6 113,521,986 (GRCm39) missense probably benign 0.00
Predicted Primers PCR Primer
(F):5'- TGTCCACGCGATGATGTGAG -3'
(R):5'- ACTGAGTTTTCCAAGCTATTAGCC -3'

Sequencing Primer
(F):5'- ATGTGAGGTCCGACAACTTG -3'
(R):5'- AGCCAAAGTTATTTCCCCTTCAATG -3'
Posted On 2022-10-06