Mutagenetix > Incidental Mutations

Incidental Mutation 'R1452:Wdsub1'

161047

Institutional Source

Beutler Lab

Gene Symbol

Wdsub1

Ensembl Gene

ENSMUSG00000026988

Gene Name

WD repeat, SAM and U-box domain containing 1

Synonyms

MMRRC Submission

039507-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.072) question?

Stock #

R1452 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

59852364-59882591 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 59876800 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glutamic Acid at position 14 (D14E)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028368] [ENSMUST00000102751] [ENSMUST00000128671] [ENSMUST00000133809] [ENSMUST00000140475]

AlphaFold

Q9D0I6

Predicted Effect

probably benign
Transcript: ENSMUST00000028368
AA Change: D150E

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000028368
Gene: ENSMUSG00000026988
AA Change: D150E

Domain	Start	End	E-Value	Type
WD40	1	38	7.85e-7	SMART
WD40	43	82	1.96e-7	SMART
WD40	85	125	5.47e-6	SMART
WD40	128	167	1.5e-3	SMART
WD40	169	217	2.48e-4	SMART
WD40	227	266	4.91e-8	SMART
WD40	269	308	7.05e-9	SMART
SAM	327	394	1.12e-15	SMART
Ubox	405	468	1.69e-24	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000102751
AA Change: D150E

PolyPhen 2 Score 0.018 (Sensitivity: 0.95; Specificity: 0.80)

SMART Domains

Protein: ENSMUSP00000099812
Gene: ENSMUSG00000026988
AA Change: D150E

Domain	Start	End	E-Value	Type
WD40	1	38	7.85e-7	SMART
WD40	43	82	1.96e-7	SMART
WD40	85	125	5.47e-6	SMART
WD40	128	167	1.5e-3	SMART
WD40	169	217	2.48e-4	SMART
WD40	227	266	4.91e-8	SMART
WD40	269	308	7.05e-9	SMART
SAM	327	394	1.12e-15	SMART
Pfam:U-box	402	423	9.3e-10	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000128671
AA Change: D150E

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000121242
Gene: ENSMUSG00000026988
AA Change: D150E

Domain	Start	End	E-Value	Type
WD40	1	38	7.85e-7	SMART
WD40	43	82	1.96e-7	SMART
WD40	85	125	5.47e-6	SMART
WD40	128	167	1.5e-3	SMART
Blast:WD40	169	194	1e-9	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000131285

Predicted Effect

probably benign
Transcript: ENSMUST00000133809
AA Change: D29E

PolyPhen 2 Score 0.059 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000114814
Gene: ENSMUSG00000026988
AA Change: D29E

Domain	Start	End	E-Value	Type
WD40	7	46	1.5e-3	SMART
WD40	48	96	2.48e-4	SMART
WD40	106	145	6e-3	SMART
low complexity region	163	175	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000139689
AA Change: D14E

SMART Domains

Protein: ENSMUSP00000121438
Gene: ENSMUSG00000026988
AA Change: D14E

Domain	Start	End	E-Value	Type
WD40	1	32	4.28e0	SMART
WD40	34	82	2.48e-4	SMART
WD40	92	131	4.91e-8	SMART
WD40	134	173	7.05e-9	SMART
Pfam:SAM_2	193	241	5.3e-10	PFAM
Pfam:SAM_1	194	241	2.4e-11	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000140475
AA Change: D150E

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000114811
Gene: ENSMUSG00000026988
AA Change: D150E

Domain	Start	End	E-Value	Type
WD40	1	38	7.85e-7	SMART
WD40	43	82	1.96e-7	SMART
WD40	85	125	5.47e-6	SMART
WD40	128	167	1.5e-3	SMART
Blast:WD40	169	194	1e-9	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000140852

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000144343

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 98.9%
3x: 97.8%
10x: 94.8%
20x: 87.5%

Validation Efficiency

99% (70/71)

Allele List at MGI

Other mutations in this stock

Total: 69 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310007B03Rik	T	C	1: 93,152,939	Y415C	probably damaging	Het
2810474O19Rik	A	T	6: 149,326,632	K392I	probably damaging	Het
A2m	A	G	6: 121,678,056	I1446M	probably benign	Het
Acaca	T	A	11: 84,295,059		probably benign	Het
Adgre4	A	T	17: 55,784,996	E85D	probably benign	Het
Akt3	A	T	1: 177,131,067	Y26N	possibly damaging	Het
Arl15	T	C	13: 113,967,783	V132A	probably benign	Het
Atp6v1h	A	G	1: 5,098,137		probably benign	Het
Atrip	T	A	9: 109,072,659	D110V	probably damaging	Het
Bahcc1	T	G	11: 120,282,239		probably benign	Het
Cd53	C	T	3: 106,768,959	G31S	probably damaging	Het
Cdk14	T	C	5: 4,888,927	S404G	possibly damaging	Het
Cers3	A	T	7: 66,783,404	K156N	probably damaging	Het
Colgalt2	C	A	1: 152,504,153	L448M	probably damaging	Het
Cox15	G	T	19: 43,746,905	T141K	probably damaging	Het
Csnk2a2	C	T	8: 95,457,375		probably benign	Het
Cyp2b10	A	T	7: 25,925,388		probably benign	Het
Cyp2c55	A	G	19: 39,011,090	Y80C	probably damaging	Het
Depdc1a	A	G	3: 159,526,691	Y693C	possibly damaging	Het
Des	T	C	1: 75,363,477	S343P	probably damaging	Het
Dync1i2	T	C	2: 71,249,863		probably benign	Het
Eif3m	T	A	2: 105,006,777	Q199L	probably damaging	Het
Emsy	G	T	7: 98,600,674	T802K	probably damaging	Het
Endov	A	G	11: 119,491,825	T33A	probably damaging	Het
Epb41l5	G	A	1: 119,549,166	T728I	probably damaging	Het
Fbxo39	A	G	11: 72,318,402	I363V	probably benign	Het
Gm8674	C	T	13: 49,900,517		noncoding transcript	Het
Gm9733	G	T	3: 15,332,152	T24K	unknown	Het
Il6st	T	A	13: 112,481,464	N137K	possibly damaging	Het
Inf2	A	G	12: 112,601,344	N136S	probably damaging	Het
Iqub	A	T	6: 24,491,559	I376N	probably benign	Het
Kansl3	A	G	1: 36,354,793		probably benign	Het
Kbtbd2	A	T	6: 56,781,924	H71Q	probably damaging	Het
Lgals8	G	T	13: 12,453,327	Y140*	probably null	Het
Macf1	T	A	4: 123,493,998	I924L	probably benign	Het
Mcoln2	A	T	3: 146,181,814	T329S	possibly damaging	Het
Mex3d	A	T	10: 80,381,520	L621Q	probably damaging	Het
Mut	A	G	17: 40,937,468		probably benign	Het
Ncor1	T	C	11: 62,334,631	H1038R	probably damaging	Het
Neb	A	G	2: 52,271,297		probably null	Het
Ngrn	A	G	7: 80,264,772	T224A	probably benign	Het
Nin	G	A	12: 70,017,650	R2019*	probably null	Het
Nphp4	C	G	4: 152,547,018	Q792E	probably damaging	Het
Olfr1047	T	A	2: 86,228,455	N172I	probably damaging	Het
Olfr1166	C	T	2: 88,124,311	V225I	probably benign	Het
Olfr140	C	T	2: 90,051,671	V218I	possibly damaging	Het
Olfr373	C	T	8: 72,100,176	Q139*	probably null	Het
Olfr70	C	T	4: 43,696,823	V117M	probably benign	Het
Pde4dip	C	A	3: 97,724,102	V1164L	probably damaging	Het
Plppr1	A	G	4: 49,301,067		probably benign	Het
Pole2	G	A	12: 69,207,929	L381F	probably benign	Het
Ppp2r5e	A	G	12: 75,469,536		probably benign	Het
Prim2	T	A	1: 33,630,404	E163D	probably benign	Het
Prrc2b	A	T	2: 32,194,985	D296V	probably damaging	Het
Pter	A	G	2: 12,978,621		probably benign	Het
Robo2	C	A	16: 73,961,910	V662L	probably damaging	Het
Slco1b2	A	T	6: 141,672,200	I424F	probably benign	Het
Snx29	A	T	16: 11,631,471	H260L	probably damaging	Het
Stil	A	G	4: 115,039,195	N959S	probably benign	Het
Taar8c	A	T	10: 24,101,610	D101E	probably benign	Het
Tns2	C	T	15: 102,108,934	R281C	probably damaging	Het
Trpc6	G	A	9: 8,653,147	M573I	probably damaging	Het
Tsr1	A	T	11: 74,899,599	D171V	probably benign	Het
Ube4b	T	C	4: 149,371,169	T348A	probably damaging	Het
Vmn1r85	A	T	7: 13,084,881	I112N	probably damaging	Het
Vps36	A	G	8: 22,218,210		probably null	Het
Wdfy3	G	A	5: 101,937,738	A630V	possibly damaging	Het
Ylpm1	T	C	12: 85,030,383	I1294T	possibly damaging	Het
Zdhhc17	A	G	10: 110,955,075	F378L	probably benign	Het

Other mutations in Wdsub1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02211:Wdsub1	APN	2	59858736	missense	probably damaging	1.00
IGL02887:Wdsub1	APN	2	59852832	missense	probably damaging	0.99
IGL02984:Wdsub1	UTSW	2	59876829	missense	probably damaging	1.00
R0116:Wdsub1	UTSW	2	59876665	splice site	probably null
R0504:Wdsub1	UTSW	2	59878325	missense	possibly damaging	0.93
R1437:Wdsub1	UTSW	2	59878133	missense	probably damaging	0.98
R1566:Wdsub1	UTSW	2	59876715	missense	probably damaging	1.00
R1767:Wdsub1	UTSW	2	59858714	missense	probably damaging	1.00
R2938:Wdsub1	UTSW	2	59873286	missense	possibly damaging	0.68
R4209:Wdsub1	UTSW	2	59876805	missense	probably damaging	1.00
R4583:Wdsub1	UTSW	2	59878317	missense	probably damaging	1.00
R4794:Wdsub1	UTSW	2	59862844	missense	possibly damaging	0.78
R4803:Wdsub1	UTSW	2	59870399	intron	probably benign
R4987:Wdsub1	UTSW	2	59870393	intron	probably benign
R4989:Wdsub1	UTSW	2	59870414	intron	probably benign
R5311:Wdsub1	UTSW	2	59878529	utr 5 prime	probably benign
R5402:Wdsub1	UTSW	2	59870478	missense	probably benign
R5408:Wdsub1	UTSW	2	59861543	unclassified	probably benign
R5572:Wdsub1	UTSW	2	59862707	missense	possibly damaging	0.95
R5681:Wdsub1	UTSW	2	59852895	missense	probably damaging	1.00
R5864:Wdsub1	UTSW	2	59878475	missense	probably damaging	1.00
R6582:Wdsub1	UTSW	2	59878308	missense	probably damaging	1.00
R6638:Wdsub1	UTSW	2	59870441	intron	probably benign
R6678:Wdsub1	UTSW	2	59862631	missense	probably benign	0.45
R6842:Wdsub1	UTSW	2	59878188	missense	probably benign	0.09
R6907:Wdsub1	UTSW	2	59861684	missense	possibly damaging	0.59
R7041:Wdsub1	UTSW	2	59852880	missense	probably damaging	1.00
R7288:Wdsub1	UTSW	2	59878143	missense	possibly damaging	0.50
R7769:Wdsub1	UTSW	2	59878419	missense	probably damaging	1.00
R7942:Wdsub1	UTSW	2	59876717	missense	probably damaging	1.00
R8291:Wdsub1	UTSW	2	59862674	missense	probably damaging	1.00
R8309:Wdsub1	UTSW	2	59874234	unclassified	probably benign
R8458:Wdsub1	UTSW	2	59861701	missense	probably benign	0.00
R8775:Wdsub1	UTSW	2	59862670	missense	probably damaging	1.00
R8775-TAIL:Wdsub1	UTSW	2	59862670	missense	probably damaging	1.00
R8997:Wdsub1	UTSW	2	59858633	missense	probably damaging	1.00
X0023:Wdsub1	UTSW	2	59876754	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AATGGAGAGGCCCTCGGTACTAAC -3'
(R):5'- AGAGAGTGTGTCAGTGAGTAGCGTC -3'

Sequencing Primer
(F):5'- CTCGGTACTAACAATGACGTGG -3'
(R):5'- AGTGAGTAGCGTCTGATGCTTTC -3'

Posted On

2014-03-14