Incidental Mutation 'R2080:Yjefn3'
ID 229421
Institutional Source Beutler Lab
Gene Symbol Yjefn3
Ensembl Gene ENSMUSG00000048967
Gene Name YjeF N-terminal domain containing 3
Synonyms LOC234365
MMRRC Submission 040085-MU
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.243) question?
Stock # R2080 (G1)
Quality Score 225
Status Validated
Chromosome 8
Chromosomal Location 69887788-69902712 bp(-) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) T to C at 69889487 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Asparagine to Aspartic acid at position 28 (N28D)
Ref Sequence ENSEMBL: ENSMUSP00000136145 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000057831] [ENSMUST00000110167] [ENSMUST00000152938] [ENSMUST00000180068]
AlphaFold F6W8I0
Predicted Effect probably benign
Transcript: ENSMUST00000057831
SMART Domains Protein: ENSMUSP00000061544
Gene: ENSMUSG00000044006

DomainStartEndE-ValueType
signal peptide 1 20 N/A INTRINSIC
Pfam:Mucin2_WxxW 58 143 2.5e-22 PFAM
TSP1 149 197 1.33e-9 SMART
Pfam:CarboxypepD_reg 210 288 4.5e-10 PFAM
IGc2 305 367 2.52e-9 SMART
low complexity region 472 481 N/A INTRINSIC
low complexity region 614 632 N/A INTRINSIC
low complexity region 693 703 N/A INTRINSIC
low complexity region 705 719 N/A INTRINSIC
low complexity region 817 827 N/A INTRINSIC
low complexity region 1041 1061 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000110167
SMART Domains Protein: ENSMUSP00000105796
Gene: ENSMUSG00000036199

DomainStartEndE-ValueType
Pfam:GRIM-19 5 129 9.6e-53 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000152456
Predicted Effect probably damaging
Transcript: ENSMUST00000152938
AA Change: N81D

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000118931
Gene: ENSMUSG00000048967
AA Change: N81D

DomainStartEndE-ValueType
low complexity region 1 12 N/A INTRINSIC
Pfam:YjeF_N 17 187 5.1e-31 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000180068
AA Change: N28D

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000136145
Gene: ENSMUSG00000048967
AA Change: N28D

DomainStartEndE-ValueType
Pfam:YjeF_N 2 159 8.8e-24 PFAM
Meta Mutation Damage Score 0.9511 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 97.2%
  • 20x: 94.7%
Validation Efficiency 100% (55/55)
Allele List at MGI
Other mutations in this stock
Total: 51 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2310003L06Rik A T 5: 87,971,933 D183V probably damaging Het
Ambra1 T A 2: 91,885,719 D858E probably damaging Het
Amdhd2 T C 17: 24,156,604 T370A probably benign Het
Amy1 A G 3: 113,558,094 W449R probably benign Het
Aox3 A T 1: 58,186,280 I1179F probably benign Het
Atp10a C A 7: 58,824,327 Q1121K probably damaging Het
Btaf1 C T 19: 36,951,148 A123V probably benign Het
Car6 T C 4: 150,198,141 K16E probably benign Het
Cgnl1 C T 9: 71,656,096 D779N probably benign Het
Cyp2a4 G A 7: 26,308,537 R123Q possibly damaging Het
D430041D05Rik C T 2: 104,156,816 R1895Q probably damaging Het
D5Ertd579e T A 5: 36,616,206 T282S probably benign Het
Dsel T C 1: 111,859,962 T948A probably benign Het
Ednrb A T 14: 103,843,100 I126N probably damaging Het
Egln1 A G 8: 124,948,306 M250T probably benign Het
Epb41l3 A T 17: 69,253,468 I337L possibly damaging Het
Epg5 T C 18: 77,948,745 I219T probably benign Het
Gm13030 T C 4: 138,873,419 probably benign Het
Gm1527 T A 3: 28,926,661 C637S probably benign Het
Hist1h1a A G 13: 23,763,949 N78S possibly damaging Het
Insrr T C 3: 87,814,291 I1168T possibly damaging Het
Ireb2 T C 9: 54,896,552 V509A possibly damaging Het
Kmt2c T C 5: 25,354,717 D981G probably damaging Het
Ktn1 A G 14: 47,725,960 E1164G probably damaging Het
L3hypdh A T 12: 72,079,527 V213E probably damaging Het
Masp1 T G 16: 23,491,959 D241A probably damaging Het
Mfsd13b A G 7: 120,991,824 I1V probably null Het
Muc5b T C 7: 141,869,754 V4531A probably benign Het
Myh2 A T 11: 67,174,941 probably null Het
Naip5 A G 13: 100,221,533 L1065P probably damaging Het
Necab1 T C 4: 15,140,219 probably benign Het
Nemf A G 12: 69,353,786 probably benign Het
Nfil3 A T 13: 52,968,033 D278E possibly damaging Het
Nup98 T C 7: 102,180,424 N393S probably damaging Het
Ogdh T A 11: 6,349,393 M753K probably benign Het
Olfr11 A T 13: 21,639,436 V29E probably damaging Het
Olfr1297 C T 2: 111,621,739 V112M probably benign Het
Olfr273 T C 4: 52,855,568 Y315C probably benign Het
Olfr561 T C 7: 102,775,243 F240L probably benign Het
Olfr901 T A 9: 38,431,082 S267T probably benign Het
Pkd2 A G 5: 104,477,123 K262E probably benign Het
Plce1 C T 19: 38,727,013 probably benign Het
Ppm1f T A 16: 16,923,880 M406K possibly damaging Het
Ptgs1 C T 2: 36,242,847 Q286* probably null Het
Scube2 T C 7: 109,808,505 T743A possibly damaging Het
Tipin T A 9: 64,290,376 L69* probably null Het
Tlk1 T A 2: 70,738,445 K404N probably damaging Het
Tmem59 C A 4: 107,178,774 L16I probably damaging Het
Utrn T C 10: 12,737,082 E426G probably benign Het
Xdh A T 17: 73,909,325 S709T probably damaging Het
Zfp598 A C 17: 24,679,667 D480A probably damaging Het
Other mutations in Yjefn3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL03065:Yjefn3 APN 8 69889556 splice site probably benign
R1519:Yjefn3 UTSW 8 69889079 missense probably benign 0.00
R1992:Yjefn3 UTSW 8 69888995 critical splice donor site probably null
R2252:Yjefn3 UTSW 8 69889445 missense probably damaging 1.00
R4213:Yjefn3 UTSW 8 69890890 missense probably benign 0.15
R5776:Yjefn3 UTSW 8 69889471 missense probably damaging 1.00
R7644:Yjefn3 UTSW 8 69887894 missense probably damaging 0.99
R8350:Yjefn3 UTSW 8 69889219 missense probably damaging 1.00
R9520:Yjefn3 UTSW 8 69889319 missense probably damaging 0.99
R9530:Yjefn3 UTSW 8 69887983 missense probably benign 0.02
Z1176:Yjefn3 UTSW 8 69889119 missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- AGATGCTGGGCTGGTATTCC -3'
(R):5'- AGTAAACAAACCGCACTGGG -3'

Sequencing Primer
(F):5'- ATTCCTGGGAGGCAGGG -3'
(R):5'- CGGGTTCACATTCTGCCTGAG -3'
Posted On 2014-09-17