Incidental Mutation 'R3788:Slc6a16'
ID272376
Institutional Source Beutler Lab
Gene Symbol Slc6a16
Ensembl Gene ENSMUSG00000094152
Gene Namesolute carrier family 6, member 16
SynonymsLOC381884
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.081) question?
Stock #R3788 (G1)
Quality Score225
Status Validated
Chromosome7
Chromosomal Location45241085-45273367 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) A to G at 45259962 bp
ZygosityHeterozygous
Amino Acid Change Aspartic acid to Glycine at position 184 (D184G)
Ref Sequence ENSEMBL: ENSMUSP00000151159 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000179310] [ENSMUST00000213347]
Predicted Effect probably benign
Transcript: ENSMUST00000179310
AA Change: D184G

PolyPhen 2 Score 0.013 (Sensitivity: 0.96; Specificity: 0.78)
SMART Domains Protein: ENSMUSP00000136199
Gene: ENSMUSG00000094152
AA Change: D184G

DomainStartEndE-ValueType
Pfam:SNF 114 668 2.4e-100 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000179310
AA Change: D184G

PolyPhen 2 Score 0.013 (Sensitivity: 0.96; Specificity: 0.78)
Predicted Effect noncoding transcript
Transcript: ENSMUST00000209877
Predicted Effect probably benign
Transcript: ENSMUST00000213347
AA Change: D195G

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.3%
  • 20x: 95.1%
Validation Efficiency 100% (61/61)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] SLC6A16 shows structural characteristics of an Na(+)- and Cl(-)-dependent neurotransmitter transporter, including 12 transmembrane (TM) domains, intracellular N and C termini, and large extracellular loops containing multiple N-glycosylation sites.[supplied by OMIM, Mar 2008]
Allele List at MGI
Other mutations in this stock
Total: 61 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2610507B11Rik T A 11: 78,288,297 probably null Het
Abca4 T A 3: 122,052,912 V26E possibly damaging Het
Abhd16a A G 17: 35,101,587 N411S probably damaging Het
Akap13 G A 7: 75,702,153 probably null Het
Aph1b T C 9: 66,794,066 probably benign Het
Aspm C T 1: 139,463,203 T742I probably damaging Het
Bclaf3 A G X: 159,566,496 H619R probably benign Het
Cemip A T 7: 83,943,898 L1199H probably damaging Het
Chd2 G A 7: 73,447,130 probably benign Het
Clnk A G 5: 38,714,998 Y310H probably damaging Het
Crmp1 A G 5: 37,284,140 D522G probably damaging Het
Cyth3 A G 5: 143,636,543 probably benign Het
Dcbld1 T A 10: 52,319,658 Y392N probably damaging Het
Fam60a A G 6: 148,926,119 S134P possibly damaging Het
Flnc T C 6: 29,454,057 F1820L probably damaging Het
Galnt18 G A 7: 111,520,115 R385* probably null Het
Gpatch3 C A 4: 133,575,168 R137S possibly damaging Het
Gpc6 C T 14: 117,624,466 P265S probably damaging Het
Harbi1 T A 2: 91,720,607 D308E probably benign Het
Hdhd2 G A 18: 76,955,187 probably null Het
Hk1 T C 10: 62,275,688 K737E possibly damaging Het
Hnrnpr G A 4: 136,336,313 V345M probably damaging Het
Kalrn T C 16: 34,220,240 H944R probably damaging Het
Kdm2a A T 19: 4,351,805 C207S probably damaging Het
Kirrel C T 3: 87,089,151 M380I probably null Het
Krt75 C T 15: 101,573,521 G104D possibly damaging Het
Lnpk A T 2: 74,522,263 S358R probably benign Het
Map2 A G 1: 66,416,863 T1512A probably damaging Het
March10 T A 11: 105,397,079 L132F probably damaging Het
Mfrp G A 9: 44,105,457 W65* probably null Het
Mgat5 A G 1: 127,366,443 D174G probably benign Het
Miga2 T A 2: 30,371,225 Y177* probably null Het
Mroh3 T C 1: 136,185,475 D747G probably damaging Het
Muc5b A G 7: 141,863,834 T3506A possibly damaging Het
Myo7b G T 18: 31,974,112 P1277T possibly damaging Het
Naaa C T 5: 92,272,554 probably null Het
Ndufs2 T C 1: 171,235,320 D410G possibly damaging Het
Olfr506 T A 7: 108,613,073 Y255* probably null Het
Olfr559 A G 7: 102,723,487 probably null Het
Olfr873 A G 9: 20,300,370 I58V probably benign Het
Olfr955 A G 9: 39,470,069 I219T probably benign Het
Osbp A T 19: 11,978,921 Y409F probably benign Het
Plxnb1 T A 9: 109,109,287 V1303D possibly damaging Het
Prkcg G A 7: 3,313,747 D246N probably damaging Het
Ranbp17 GCCTGGATACTGACC GCC 11: 33,219,203 probably benign Het
Sbf1 G A 15: 89,299,528 R1261* probably null Het
Scn4a T C 11: 106,344,274 N341S probably damaging Het
Sec61a2 C A 2: 5,879,625 probably null Het
Sgcd T A 11: 47,355,205 K57* probably null Het
Slc12a5 T C 2: 164,993,775 L861P probably damaging Het
Snx7 A G 3: 117,838,990 probably benign Het
Sptbn2 A G 19: 4,745,922 I1710V probably damaging Het
Sytl2 A T 7: 90,376,081 I426F probably benign Het
Tdp1 A G 12: 99,891,752 probably benign Het
Tmem232 C A 17: 65,382,633 D496Y possibly damaging Het
Tomm20l C T 12: 71,111,742 A58V possibly damaging Het
Ttc26 T A 6: 38,403,524 probably null Het
Ttn T C 2: 76,945,274 E1854G unknown Het
Ttn A G 2: 76,974,208 V240A probably benign Het
Vmn2r98 A T 17: 19,080,625 T630S probably benign Het
Xrcc1 G C 7: 24,566,908 A220P probably benign Het
Other mutations in Slc6a16
AlleleSourceChrCoordTypePredicted EffectPPH Score
R0345:Slc6a16 UTSW 7 45259248 missense possibly damaging 0.50
R1721:Slc6a16 UTSW 7 45261176 missense possibly damaging 0.86
R3854:Slc6a16 UTSW 7 45268172 missense probably damaging 1.00
R5024:Slc6a16 UTSW 7 45259966 missense probably benign 0.02
R5450:Slc6a16 UTSW 7 45261248 missense probably benign 0.33
R5624:Slc6a16 UTSW 7 45261108 missense probably benign 0.00
R5756:Slc6a16 UTSW 7 45260850 missense possibly damaging 0.95
R6224:Slc6a16 UTSW 7 45261148 missense probably damaging 1.00
R6384:Slc6a16 UTSW 7 45257593 intron probably null
R6736:Slc6a16 UTSW 7 45259028 missense possibly damaging 0.57
R7035:Slc6a16 UTSW 7 45260827 missense probably damaging 1.00
R7525:Slc6a16 UTSW 7 45259113 missense probably benign 0.01
R7527:Slc6a16 UTSW 7 45272639 missense probably damaging 1.00
R7681:Slc6a16 UTSW 7 45260914 missense probably damaging 1.00
R7884:Slc6a16 UTSW 7 45259347 missense probably damaging 0.99
R7967:Slc6a16 UTSW 7 45259347 missense probably damaging 0.99
Z1177:Slc6a16 UTSW 7 45260908 missense probably damaging 0.97
Predicted Primers PCR Primer
(F):5'- AGTCAAGCCTTAACCTTGTGG -3'
(R):5'- CTGACAAAGTTTGGAGGGGC -3'

Sequencing Primer
(F):5'- AAGCCTTAACCTTGTGGCCTGAG -3'
(R):5'- CTGAAGGAGCATGGTCCACAC -3'
Posted On2015-03-25