Incidental Mutation 'R6702:Atg7'
| ID |
543536 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Atg7
|
| Ensembl Gene |
ENSMUSG00000030314 |
| Gene Name |
autophagy related 7 |
| Synonyms |
1810013K23Rik, Apg7l |
| MMRRC Submission |
044820-MU
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R6702 (G1)
|
| Quality Score |
221.009 |
|
Status
|
Validated
|
| Chromosome |
6 |
| Chromosomal Location |
114620075-114837565 bp(+) (GRCm39) |
| Type of Mutation |
splice site |
| DNA Base Change (assembly) |
C to A
at 114648058 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000138651
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000032457]
[ENSMUST00000169310]
[ENSMUST00000182034]
[ENSMUST00000182035]
[ENSMUST00000182098]
[ENSMUST00000182169]
[ENSMUST00000182428]
[ENSMUST00000182902]
[ENSMUST00000182510]
[ENSMUST00000182771]
[ENSMUST00000182793]
[ENSMUST00000183165]
|
| AlphaFold |
Q9D906 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000032457
|
| SMART Domains |
Protein: ENSMUSP00000032457
Gene: ENSMUSG00000030314
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:ThiF
|
350 |
506 |
1.6e-38 |
PFAM |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000169310
|
| SMART Domains |
Protein: ENSMUSP00000133215
Gene: ENSMUSG00000030314
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:ATG7_N
|
9 |
319 |
1.5e-106 |
PFAM |
|
Pfam:ThiF
|
329 |
643 |
7.9e-61 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000182034
|
| SMART Domains |
Protein: ENSMUSP00000138358
Gene: ENSMUSG00000030314
| Domain | Start | End | E-Value | Type |
|---|
|
PDB:3VX8|A
|
25 |
231 |
1e-39 |
PDB |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000182035
|
| SMART Domains |
Protein: ENSMUSP00000138731
Gene: ENSMUSG00000030314
| Domain | Start | End | E-Value | Type |
|---|
|
PDB:3VX8|A
|
9 |
222 |
9e-40 |
PDB |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000182098
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000182169
|
| SMART Domains |
Protein: ENSMUSP00000138404
Gene: ENSMUSG00000030314
| Domain | Start | End | E-Value | Type |
|---|
|
PDB:3VX8|A
|
32 |
110 |
2e-9 |
PDB |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000182428
|
| SMART Domains |
Protein: ENSMUSP00000138779
Gene: ENSMUSG00000030314
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:ThiF
|
350 |
506 |
1.1e-37 |
PFAM |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000182902
|
| SMART Domains |
Protein: ENSMUSP00000138651
Gene: ENSMUSG00000030314
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:ThiF
|
350 |
506 |
1.6e-38 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000182510
|
| SMART Domains |
Protein: ENSMUSP00000138300
Gene: ENSMUSG00000030314
| Domain | Start | End | E-Value | Type |
|---|
|
PDB:3VX8|A
|
9 |
159 |
8e-37 |
PDB |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000182771
|
| SMART Domains |
Protein: ENSMUSP00000138374
Gene: ENSMUSG00000030314
| Domain | Start | End | E-Value | Type |
|---|
|
PDB:3VX8|A
|
9 |
47 |
7e-8 |
PDB |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000182793
|
| SMART Domains |
Protein: ENSMUSP00000138137
Gene: ENSMUSG00000030314
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:ThiF
|
350 |
506 |
1.6e-38 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000183165
|
| SMART Domains |
Protein: ENSMUSP00000138600
Gene: ENSMUSG00000030314
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:ThiF
|
311 |
467 |
9.7e-38 |
PFAM |
|
| Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.7%
- 10x: 98.4%
- 20x: 95.5%
|
| Validation Efficiency |
97% (59/61) |
| MGI Phenotype |
FUNCTION: This gene encodes an E1-like activating enzyme that is essential for autophagy and cytoplasmic to vacuole transport. The encoded protein is also thought to modulate p53-dependent cell cycle pathways during prolonged metabolic stress. It has been associated with multiple functions, including axon membrane trafficking, axonal homeostasis, mitophagy, adipose differentiation, and hematopoietic stem cell maintenance. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2015]
PHENOTYPE: Mutation of this gene causes impairment of constitutive and starvation-induced autophagy resulting in defective protein degradation. Homozygous null mice die within 1 day of birth and have decreased body weight. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 61 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 1700020N01Rik |
T |
A |
10: 21,497,558 (GRCm39) |
Y66* |
probably null |
Het |
| Ak3 |
A |
G |
19: 29,003,627 (GRCm39) |
V183A |
probably damaging |
Het |
| Ano10 |
G |
T |
9: 122,088,630 (GRCm39) |
Q397K |
possibly damaging |
Het |
| Brpf3 |
A |
C |
17: 29,029,633 (GRCm39) |
N531T |
probably benign |
Het |
| Casp2 |
T |
C |
6: 42,244,985 (GRCm39) |
V128A |
probably benign |
Het |
| Cdcp2 |
T |
C |
4: 106,964,283 (GRCm39) |
C378R |
probably benign |
Het |
| Cfap54 |
T |
A |
10: 92,704,596 (GRCm39) |
D2828V |
unknown |
Het |
| Col6a3 |
T |
C |
1: 90,707,161 (GRCm39) |
D1984G |
unknown |
Het |
| Csnk2a1 |
A |
G |
2: 152,100,608 (GRCm39) |
T93A |
probably benign |
Het |
| Ddx54 |
T |
A |
5: 120,764,568 (GRCm39) |
D758E |
possibly damaging |
Het |
| Dlx2 |
A |
G |
2: 71,376,571 (GRCm39) |
S56P |
probably damaging |
Het |
| Dna2 |
T |
A |
10: 62,809,073 (GRCm39) |
I1055N |
possibly damaging |
Het |
| Dnah10 |
A |
G |
5: 124,882,869 (GRCm39) |
Y2909C |
probably damaging |
Het |
| Dnm3 |
A |
G |
1: 162,146,256 (GRCm39) |
F296L |
probably benign |
Het |
| Fat1 |
A |
G |
8: 45,406,083 (GRCm39) |
T945A |
probably benign |
Het |
| Herpud1 |
T |
C |
8: 95,119,154 (GRCm39) |
|
probably null |
Het |
| Iqub |
T |
A |
6: 24,449,744 (GRCm39) |
N707I |
probably damaging |
Het |
| Kif26b |
C |
G |
1: 178,744,852 (GRCm39) |
S1649R |
possibly damaging |
Het |
| Lamp5 |
C |
G |
2: 135,901,483 (GRCm39) |
N102K |
possibly damaging |
Het |
| Ltbr |
A |
G |
6: 125,285,031 (GRCm39) |
S290P |
probably benign |
Het |
| Map4k1 |
T |
G |
7: 28,701,821 (GRCm39) |
S803A |
possibly damaging |
Het |
| Mef2c |
T |
A |
13: 83,773,525 (GRCm39) |
C134S |
possibly damaging |
Het |
| Myo15a |
A |
G |
11: 60,383,818 (GRCm39) |
I1622V |
probably benign |
Het |
| Nbea |
A |
G |
3: 55,912,923 (GRCm39) |
Y955H |
probably benign |
Het |
| Ndor1 |
A |
G |
2: 25,139,902 (GRCm39) |
F142S |
possibly damaging |
Het |
| Nynrin |
A |
G |
14: 56,101,935 (GRCm39) |
T535A |
possibly damaging |
Het |
| Or4k15 |
A |
G |
14: 50,364,688 (GRCm39) |
Y218C |
probably damaging |
Het |
| Or4k42 |
T |
A |
2: 111,320,454 (GRCm39) |
|
probably null |
Het |
| Or5ac23 |
C |
T |
16: 59,148,961 (GRCm39) |
V304I |
probably benign |
Het |
| Or5d46 |
G |
A |
2: 88,170,586 (GRCm39) |
V226I |
probably benign |
Het |
| Or8b51 |
A |
T |
9: 38,569,073 (GRCm39) |
I205N |
possibly damaging |
Het |
| Pcdhb13 |
T |
G |
18: 37,577,828 (GRCm39) |
H735Q |
probably benign |
Het |
| Pcdhb7 |
A |
T |
18: 37,474,959 (GRCm39) |
M32L |
probably benign |
Het |
| Peg10 |
GC |
GCTCC |
6: 4,756,452 (GRCm39) |
|
probably benign |
Het |
| Per2 |
C |
T |
1: 91,355,671 (GRCm39) |
E696K |
probably damaging |
Het |
| Pld4 |
T |
C |
12: 112,731,485 (GRCm39) |
S213P |
probably damaging |
Het |
| Prkg1 |
T |
A |
19: 30,970,484 (GRCm39) |
H209L |
probably benign |
Het |
| Psg16 |
T |
C |
7: 16,824,321 (GRCm39) |
L35P |
probably damaging |
Het |
| Pxn |
C |
T |
5: 115,689,955 (GRCm39) |
L160F |
probably benign |
Het |
| Rab3a |
A |
G |
8: 71,209,095 (GRCm39) |
D77G |
probably damaging |
Het |
| Resf1 |
T |
A |
6: 149,229,376 (GRCm39) |
N807K |
probably damaging |
Het |
| Rgma |
A |
T |
7: 73,067,068 (GRCm39) |
T108S |
probably damaging |
Het |
| Rxrg |
A |
G |
1: 167,441,374 (GRCm39) |
S51G |
probably benign |
Het |
| S1pr3 |
A |
T |
13: 51,573,475 (GRCm39) |
I219F |
probably damaging |
Het |
| Sec23b |
A |
T |
2: 144,401,109 (GRCm39) |
|
probably null |
Het |
| Sfrp5 |
G |
T |
19: 42,190,266 (GRCm39) |
T62K |
probably benign |
Het |
| Slco1a6 |
T |
A |
6: 142,048,826 (GRCm39) |
Y318F |
probably damaging |
Het |
| Slit1 |
A |
C |
19: 41,603,309 (GRCm39) |
S931A |
possibly damaging |
Het |
| Sorl1 |
A |
T |
9: 41,982,497 (GRCm39) |
V361E |
probably damaging |
Het |
| St6galnac2 |
A |
G |
11: 116,575,213 (GRCm39) |
S209P |
probably benign |
Het |
| Supt6 |
C |
A |
11: 78,122,626 (GRCm39) |
R199L |
possibly damaging |
Het |
| Tas2r107 |
A |
C |
6: 131,636,347 (GRCm39) |
M234R |
probably benign |
Het |
| Tmem72 |
C |
G |
6: 116,675,310 (GRCm39) |
V61L |
probably benign |
Het |
| Trpm5 |
C |
A |
7: 142,623,055 (GRCm39) |
|
probably benign |
Het |
| Ttn |
T |
G |
2: 76,550,456 (GRCm39) |
T23282P |
probably damaging |
Het |
| Ubap2 |
GCCCGCTTGCCCCGCT |
GCCCGCTTGCCCCGCTTGCCCCGCT |
4: 41,227,210 (GRCm39) |
|
probably benign |
Het |
| Ubr3 |
A |
T |
2: 69,786,393 (GRCm39) |
R836W |
probably benign |
Het |
| Umodl1 |
A |
G |
17: 31,205,273 (GRCm39) |
|
probably null |
Het |
| Ythdf1 |
A |
G |
2: 180,560,926 (GRCm39) |
|
probably null |
Het |
| Zfp780b |
T |
C |
7: 27,671,066 (GRCm39) |
T81A |
possibly damaging |
Het |
| Zfp811 |
T |
C |
17: 33,016,816 (GRCm39) |
E407G |
probably damaging |
Het |
|
| Other mutations in Atg7 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL02969:Atg7
|
APN |
6 |
114,701,884 (GRCm39) |
missense |
possibly damaging |
0.71 |
|
R1460:Atg7
|
UTSW |
6 |
114,680,325 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1467:Atg7
|
UTSW |
6 |
114,835,943 (GRCm39) |
splice site |
probably benign |
|
|
R1561:Atg7
|
UTSW |
6 |
114,678,133 (GRCm39) |
missense |
possibly damaging |
0.52 |
|
R1755:Atg7
|
UTSW |
6 |
114,650,638 (GRCm39) |
missense |
possibly damaging |
0.64 |
|
R1934:Atg7
|
UTSW |
6 |
114,678,196 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R1962:Atg7
|
UTSW |
6 |
114,683,191 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1964:Atg7
|
UTSW |
6 |
114,683,191 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2064:Atg7
|
UTSW |
6 |
114,680,324 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3722:Atg7
|
UTSW |
6 |
114,672,624 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R3870:Atg7
|
UTSW |
6 |
114,674,008 (GRCm39) |
missense |
possibly damaging |
0.71 |
|
R3926:Atg7
|
UTSW |
6 |
114,650,639 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
R4044:Atg7
|
UTSW |
6 |
114,678,939 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4111:Atg7
|
UTSW |
6 |
114,690,255 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R4212:Atg7
|
UTSW |
6 |
114,680,386 (GRCm39) |
missense |
probably benign |
0.02 |
|
R4943:Atg7
|
UTSW |
6 |
114,674,045 (GRCm39) |
missense |
probably benign |
0.25 |
|
R5216:Atg7
|
UTSW |
6 |
114,701,910 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R5465:Atg7
|
UTSW |
6 |
114,629,493 (GRCm39) |
missense |
probably benign |
|
|
R5555:Atg7
|
UTSW |
6 |
114,679,014 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5618:Atg7
|
UTSW |
6 |
114,650,660 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5902:Atg7
|
UTSW |
6 |
114,650,639 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
R5903:Atg7
|
UTSW |
6 |
114,683,254 (GRCm39) |
nonsense |
probably null |
|
|
R5980:Atg7
|
UTSW |
6 |
114,657,197 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
R6031:Atg7
|
UTSW |
6 |
114,648,194 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6031:Atg7
|
UTSW |
6 |
114,648,194 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6178:Atg7
|
UTSW |
6 |
114,701,856 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6924:Atg7
|
UTSW |
6 |
114,686,172 (GRCm39) |
critical splice donor site |
probably null |
|
|
R6941:Atg7
|
UTSW |
6 |
114,650,639 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
R7201:Atg7
|
UTSW |
6 |
114,754,018 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7561:Atg7
|
UTSW |
6 |
114,650,002 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
R8070:Atg7
|
UTSW |
6 |
114,674,041 (GRCm39) |
missense |
probably benign |
0.03 |
|
R8170:Atg7
|
UTSW |
6 |
114,678,151 (GRCm39) |
missense |
probably benign |
0.11 |
|
R8329:Atg7
|
UTSW |
6 |
114,663,057 (GRCm39) |
missense |
possibly damaging |
0.70 |
|
R8367:Atg7
|
UTSW |
6 |
114,663,060 (GRCm39) |
missense |
probably benign |
|
|
R9084:Atg7
|
UTSW |
6 |
114,678,896 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9221:Atg7
|
UTSW |
6 |
114,672,588 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R9411:Atg7
|
UTSW |
6 |
114,690,289 (GRCm39) |
missense |
probably benign |
0.41 |
|
R9622:Atg7
|
UTSW |
6 |
114,654,993 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1088:Atg7
|
UTSW |
6 |
114,672,647 (GRCm39) |
missense |
probably benign |
0.15 |
|
Z1176:Atg7
|
UTSW |
6 |
114,650,011 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
| Predicted Primers |
PCR Primer
(F):5'- AATAATCCTGGGCCATATTGGG -3'
(R):5'- TACCATGCTTGTGAACCACG -3'
Sequencing Primer
(F):5'- GCAAGTCAGCCCATATTGGTG -3'
(R):5'- TTGTGAACCACGCATGTGC -3'
|
| Posted On |
2019-02-22 |
Incidental Mutation