Mutagenetix > Incidental Mutations

Incidental Mutation 'R1449:Iqsec1'

159122

Institutional Source

Beutler Lab

Gene Symbol

Iqsec1

Ensembl Gene

ENSMUSG00000034312

Gene Name

IQ motif and Sec7 domain 1

Synonyms

D6Ertd349e, cI-43, BRAG2

MMRRC Submission

039504-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.155) question?

Stock #

R1449 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

90656088-90988685 bp(-) (GRCm38)

Type of Mutation

nonsense

DNA Base Change (assembly)

T to A at 90690808 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Stop codon at position 216 (K216*)

Ref Sequence

ENSEMBL: ENSMUSP00000148669 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000101151] [ENSMUST00000101153] [ENSMUST00000156834] [ENSMUST00000212100]

AlphaFold

Q8R0S2

Predicted Effect

probably null
Transcript: ENSMUST00000101151
AA Change: K112*

SMART Domains

Protein: ENSMUSP00000098710
Gene: ENSMUSG00000034312
AA Change: K112*

Domain	Start	End	E-Value	Type
low complexity region	57	68	N/A	INTRINSIC
Blast:Sec7	69	369	6e-39	BLAST
low complexity region	370	389	N/A	INTRINSIC
low complexity region	396	430	N/A	INTRINSIC
low complexity region	450	481	N/A	INTRINSIC
Sec7	505	696	1.31e-95	SMART
PH	737	848	2.39e-2	SMART
low complexity region	901	914	N/A	INTRINSIC
low complexity region	963	976	N/A	INTRINSIC
low complexity region	978	1000	N/A	INTRINSIC
low complexity region	1014	1060	N/A	INTRINSIC
low complexity region	1062	1094	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000101153
AA Change: K126*

SMART Domains

Protein: ENSMUSP00000098712
Gene: ENSMUSG00000034312
AA Change: K126*

Domain	Start	End	E-Value	Type
low complexity region	71	82	N/A	INTRINSIC
Blast:Sec7	83	383	4e-39	BLAST
low complexity region	384	403	N/A	INTRINSIC
low complexity region	410	444	N/A	INTRINSIC
low complexity region	464	495	N/A	INTRINSIC
Sec7	519	710	1.31e-95	SMART
PH	751	862	2.39e-2	SMART
low complexity region	915	928	N/A	INTRINSIC
low complexity region	948	957	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133492

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000146977

Predicted Effect

probably null
Transcript: ENSMUST00000156834
AA Change: K127*

SMART Domains

Protein: ENSMUSP00000118802
Gene: ENSMUSG00000034312
AA Change: K127*

Domain	Start	End	E-Value	Type
low complexity region	72	83	N/A	INTRINSIC
Blast:Sec7	84	208	5e-24	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000204662

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000205068

Predicted Effect

probably null
Transcript: ENSMUST00000212100
AA Change: K216*

Coding Region Coverage

1x: 98.8%
3x: 97.9%
10x: 94.7%
20x: 87.4%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a conditional allele activated in neurons fail to exhibit mGluR- and NMDAR-mediated long term depression. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 79 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700013G24Rik	A	G	4: 137,455,355	N274D	possibly damaging	Het
6430571L13Rik	T	A	9: 107,342,490	N47K	probably damaging	Het
Aasdh	C	T	5: 76,886,289	A472T	probably benign	Het
Abca13	A	G	11: 9,298,580	T2776A	probably damaging	Het
Adamts10	T	A	17: 33,545,639	V711D	probably damaging	Het
Adrb3	G	A	8: 27,227,387	R345C	probably damaging	Het
Ak7	T	C	12: 105,742,261	V325A	possibly damaging	Het
Armc6	G	A	8: 70,225,293	L129F	probably benign	Het
Bend6	T	C	1: 33,878,343	N10S	probably benign	Het
Bmpr1b	T	C	3: 141,871,373	E59G	possibly damaging	Het
Brd3	A	G	2: 27,450,251		probably null	Het
Brd3	A	G	2: 27,457,016	Y369H	probably damaging	Het
Cacna1e	C	T	1: 154,485,662		probably null	Het
Camk4	A	G	18: 32,939,475	D27G	probably damaging	Het
Camkk1	T	G	11: 73,033,884	S308A	probably damaging	Het
Catsperb	A	G	12: 101,588,197	T717A	probably benign	Het
Cdh23	A	T	10: 60,376,951	S1563R	probably damaging	Het
Cep44	A	T	8: 56,540,950	S197R	probably benign	Het
Col3a1	T	A	1: 45,321,611	I67N	unknown	Het
Dcaf12l1	T	C	X: 44,789,427	T165A	probably benign	Het
Dicer1	T	C	12: 104,729,243	Y143C	possibly damaging	Het
Dlg5	A	G	14: 24,135,643	I1898T	possibly damaging	Het
Dnah1	T	C	14: 31,263,951	N3762D	probably damaging	Het
Dscaml1	A	T	9: 45,742,223	T1382S	possibly damaging	Het
Entpd3	A	T	9: 120,566,489	R513W	probably damaging	Het
Foxred1	A	G	9: 35,209,442	S132P	probably damaging	Het
Ftsj3	T	C	11: 106,253,000	I273V	probably benign	Het
Hsd17b7	C	T	1: 169,959,682		probably null	Het
Iars	T	A	13: 49,733,710	V1253D	probably damaging	Het
Itga7	A	G	10: 128,953,501	D971G	probably benign	Het
Kcnk2	G	A	1: 189,340,026	S35L	probably benign	Het
Kif13a	T	C	13: 46,812,736	Y402C	probably damaging	Het
Lamc1	A	G	1: 153,250,495	S484P	probably benign	Het
Lap3	T	C	5: 45,509,519		probably null	Het
Lhx8	G	T	3: 154,328,105	S46*	probably null	Het
Lin7a	T	C	10: 107,323,952	S42P	probably damaging	Het
Lrba	G	A	3: 86,354,278	R1513Q	probably damaging	Het
Maml2	C	A	9: 13,620,684	P398Q	possibly damaging	Het
Mast2	T	C	4: 116,309,013	I1201V	probably damaging	Het
Mmp20	A	T	9: 7,642,768	D201V	probably damaging	Het
Morn5	T	A	2: 36,057,080	C123*	probably null	Het
Mrpl4	A	G	9: 21,007,511	K175E	possibly damaging	Het
Nav3	A	T	10: 109,853,511	S302T	probably benign	Het
Ndrg2	T	C	14: 51,908,134	Y217C	probably damaging	Het
Nfx1	A	G	4: 40,976,803	D159G	probably damaging	Het
Nlrp9b	A	T	7: 20,023,164	T109S	possibly damaging	Het
Npepps	A	G	11: 97,207,154	Y909H	probably benign	Het
Olfr1510	A	G	14: 52,410,567	C102R	probably damaging	Het
Olfr559	A	T	7: 102,724,190	F100Y	probably damaging	Het
Olfr740	A	G	14: 50,453,921	N290D	probably damaging	Het
Olfr801	T	A	10: 129,670,369	D50V	probably damaging	Het
Olfr810	A	C	10: 129,790,854	V245G	probably damaging	Het
Pcdh1	T	C	18: 38,189,876	H968R	probably damaging	Het
Pde1b	T	A	15: 103,525,043	I296N	probably damaging	Het
Phldb1	T	A	9: 44,716,633	T172S	probably benign	Het
Plxdc2	T	C	2: 16,660,781	V215A	possibly damaging	Het
Poln	A	G	5: 34,014,338	I695T	probably damaging	Het
Pou6f2	G	T	13: 18,172,415	Q31K	probably damaging	Het
Psd	T	A	19: 46,324,811	Y40F	probably damaging	Het
Rnf126	T	C	10: 79,761,614	N155D	probably benign	Het
Rpl36-ps3	C	A	12: 12,912,031		noncoding transcript	Het
Rrp15	C	A	1: 186,736,268	V184F	possibly damaging	Het
Rslcan18	G	T	13: 67,102,100	L24M	possibly damaging	Het
Sall1	A	G	8: 89,032,483	I331T	probably benign	Het
Slamf7	A	T	1: 171,641,038	N95K	possibly damaging	Het
Slc1a6	T	C	10: 78,800,117	Y339H	probably damaging	Het
Slc39a8	A	G	3: 135,826,685	N72D	probably benign	Het
Slf1	A	G	13: 77,083,449	S604P	probably damaging	Het
Slfn4	C	T	11: 83,188,993	T110M	probably benign	Het
Tnpo1	T	C	13: 98,878,712	T116A	probably damaging	Het
Tor1b	T	C	2: 30,955,881	I190T	probably damaging	Het
Ttn	C	A	2: 76,969,794	E357*	probably null	Het
Tubg2	G	T	11: 101,156,873	E95*	probably null	Het
Ubap2	A	G	4: 41,209,351		probably null	Het
Ube2i	T	C	17: 25,268,564	D67G	possibly damaging	Het
Ubxn11	A	G	4: 134,124,892	E50G	probably damaging	Het
Wnk1	A	G	6: 119,952,818	V1246A	probably damaging	Het
Zcchc7	A	G	4: 44,929,124	T38A	possibly damaging	Het
Zfp236	A	G	18: 82,646,005	S552P	probably damaging	Het

Other mutations in Iqsec1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01324:Iqsec1	APN	6	90689703	missense	probably damaging	1.00
IGL01749:Iqsec1	APN	6	90680504	missense	probably benign	0.03
IGL01960:Iqsec1	APN	6	90676780	missense	probably damaging	1.00
IGL02007:Iqsec1	APN	6	90690349	missense	probably benign	0.37
IGL02045:Iqsec1	APN	6	90664069	missense	probably damaging	0.96
IGL02186:Iqsec1	APN	6	90676877	missense	probably damaging	1.00
IGL02211:Iqsec1	APN	6	90671609	missense	probably damaging	1.00
IGL02503:Iqsec1	APN	6	90668788	missense	probably damaging	1.00
IGL02506:Iqsec1	APN	6	90672075	missense	possibly damaging	0.94
IGL02554:Iqsec1	APN	6	90669345	missense	probably damaging	1.00
PIT4260001:Iqsec1	UTSW	6	90690489	missense	probably damaging	1.00
PIT4810001:Iqsec1	UTSW	6	90670491	missense	probably damaging	1.00
R0139:Iqsec1	UTSW	6	90809758	intron	probably benign
R0371:Iqsec1	UTSW	6	90670403	splice site	probably benign
R0617:Iqsec1	UTSW	6	90689970	missense	probably damaging	1.00
R0619:Iqsec1	UTSW	6	90670406	splice site	probably null
R1157:Iqsec1	UTSW	6	90669384	missense	possibly damaging	0.83
R1168:Iqsec1	UTSW	6	90689676	missense	probably damaging	1.00
R1190:Iqsec1	UTSW	6	90689677	missense	probably damaging	1.00
R1192:Iqsec1	UTSW	6	90671976	splice site	probably benign
R1435:Iqsec1	UTSW	6	90672024	missense	probably damaging	1.00
R1697:Iqsec1	UTSW	6	90809770	nonsense	probably null
R1921:Iqsec1	UTSW	6	90662895	missense	probably benign	0.00
R1958:Iqsec1	UTSW	6	90670459	missense	probably damaging	1.00
R2017:Iqsec1	UTSW	6	90689930	missense	probably benign	0.02
R2082:Iqsec1	UTSW	6	90694574	missense	probably damaging	1.00
R2372:Iqsec1	UTSW	6	90694654	missense	probably damaging	1.00
R2442:Iqsec1	UTSW	6	90689883	missense	possibly damaging	0.52
R4120:Iqsec1	UTSW	6	90662602	nonsense	probably null
R4371:Iqsec1	UTSW	6	90694606	missense	probably damaging	1.00
R4645:Iqsec1	UTSW	6	90668013	missense	probably damaging	1.00
R4864:Iqsec1	UTSW	6	90664056	missense	probably damaging	1.00
R5436:Iqsec1	UTSW	6	90845361	intron	probably benign
R5790:Iqsec1	UTSW	6	90689880	nonsense	probably null
R6007:Iqsec1	UTSW	6	90660987	nonsense	probably null
R6143:Iqsec1	UTSW	6	90809684	splice site	probably null
R6218:Iqsec1	UTSW	6	90689635	missense	probably damaging	1.00
R6972:Iqsec1	UTSW	6	90676768	missense	probably damaging	1.00
R7506:Iqsec1	UTSW	6	90662806	missense	possibly damaging	0.53
R7506:Iqsec1	UTSW	6	90667909	missense	probably damaging	1.00
R7539:Iqsec1	UTSW	6	90662891	missense	probably benign	0.00
R7921:Iqsec1	UTSW	6	90667941	missense	probably damaging	1.00
R7946:Iqsec1	UTSW	6	90690270	missense	probably damaging	1.00
R8238:Iqsec1	UTSW	6	90689930	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- TGGCATCTGCAAAGTCACTGGAG -3'
(R):5'- GCCCCAAGCTGCTGTTTTAAACC -3'

Sequencing Primer
(F):5'- TGGGAGCCATCATTAGTCAC -3'
(R):5'- AGCTGCTGTTTTAAACCACTTGG -3'

Posted On

2014-03-14