Mutagenetix > Incidental Mutation

Incidental Mutation 'R2252:Pcif1'

241730

Institutional Source

Beutler Lab

Gene Symbol

Pcif1

Ensembl Gene

ENSMUSG00000039849

Gene Name

phosphorylated CTD interacting factor 1

Synonyms

F730014I05Rik, 2310022K11Rik

MMRRC Submission

040252-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.202) question?

Stock #

R2252 (G1)

Quality Score

197

Status

Not validated

Chromosome

Chromosomal Location

164721288-164733360 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 164732799 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 628 (E628G)

Ref Sequence

ENSEMBL: ENSMUSP00000039555 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000041361] [ENSMUST00000041643] [ENSMUST00000183830]

AlphaFold

P59114

Predicted Effect

probably benign
Transcript: ENSMUST00000041361

SMART Domains

Protein: ENSMUSP00000038298
Gene: ENSMUSG00000039834

Domain	Start	End	E-Value	Type
low complexity region	31	45	N/A	INTRINSIC
low complexity region	52	63	N/A	INTRINSIC
ZnF_C2H2	248	271	4.24e-4	SMART
low complexity region	275	282	N/A	INTRINSIC
low complexity region	300	321	N/A	INTRINSIC
low complexity region	340	365	N/A	INTRINSIC
low complexity region	435	445	N/A	INTRINSIC
ZnF_C2H2	466	488	2.17e-1	SMART
ZnF_C2H2	496	518	1.56e-2	SMART
ZnF_C2H2	524	546	8.81e-2	SMART
ZnF_C2H2	563	585	2.79e-4	SMART
ZnF_C2H2	591	613	2.53e-2	SMART
ZnF_C2H2	622	644	6.78e-3	SMART
ZnF_C2H2	650	673	8.22e-2	SMART
ZnF_C2H2	679	702	3.29e-1	SMART
low complexity region	711	726	N/A	INTRINSIC
internal_repeat_3	770	937	7.16e-5	PROSPERO
low complexity region	1005	1015	N/A	INTRINSIC
ZnF_C2H2	1019	1041	2.95e-3	SMART
ZnF_C2H2	1047	1069	5.5e-3	SMART
ZnF_C2H2	1075	1097	1.58e-3	SMART
ZnF_C2H2	1103	1126	3.34e-2	SMART
low complexity region	1288	1305	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000041643
AA Change: E628G

PolyPhen 2 Score 0.051 (Sensitivity: 0.94; Specificity: 0.83)

SMART Domains

Protein: ENSMUSP00000039555
Gene: ENSMUSG00000039849
AA Change: E628G

Domain	Start	End	E-Value	Type
WW	44	77	4.34e-4	SMART
low complexity region	132	148	N/A	INTRINSIC
Pfam:PCIF1_WW	445	620	7.1e-74	PFAM
low complexity region	675	686	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000183830

SMART Domains

Protein: ENSMUSP00000139133
Gene: ENSMUSG00000039834

Domain	Start	End	E-Value	Type
low complexity region	31	45	N/A	INTRINSIC
low complexity region	52	63	N/A	INTRINSIC
ZnF_C2H2	248	271	4.24e-4	SMART
low complexity region	275	282	N/A	INTRINSIC
low complexity region	300	321	N/A	INTRINSIC
low complexity region	340	365	N/A	INTRINSIC
low complexity region	435	445	N/A	INTRINSIC
ZnF_C2H2	466	488	2.17e-1	SMART
ZnF_C2H2	496	518	1.56e-2	SMART
ZnF_C2H2	524	546	8.81e-2	SMART
ZnF_C2H2	563	585	2.79e-4	SMART

Coding Region Coverage

1x: 99.1%
3x: 98.6%
10x: 97.3%
20x: 95.1%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 56 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700129C05Rik	G	A	14: 59,380,061 (GRCm39)	S79F	probably damaging	Het
Acaca	G	T	11: 84,262,358 (GRCm39)	V1987L	probably damaging	Het
B3gnt3	A	T	8: 72,145,462 (GRCm39)	M302K	probably damaging	Het
BC048507	T	C	13: 68,011,626 (GRCm39)	M1T	probably null	Het
Bckdk	C	A	7: 127,504,590 (GRCm39)	R105S	probably damaging	Het
Casp3	G	T	8: 47,090,990 (GRCm39)	W214L	probably damaging	Het
Cd180	A	T	13: 102,842,906 (GRCm39)	K651*	probably null	Het
Cdh15	T	A	8: 123,584,161 (GRCm39)	D87E	probably damaging	Het
Cldn24	G	T	8: 48,275,363 (GRCm39)	R62S	probably benign	Het
Cnot1	A	G	8: 96,489,814 (GRCm39)	V463A	probably benign	Het
Cspg4	C	T	9: 56,805,330 (GRCm39)	T2047I	probably damaging	Het
Cul2	A	T	18: 3,399,876 (GRCm39)	L3F	probably damaging	Het
Cwc27	A	T	13: 104,768,237 (GRCm39)	H419Q	probably damaging	Het
Dgkg	A	T	16: 22,441,010 (GRCm39)	M1K	probably null	Het
Dock5	A	T	14: 68,022,261 (GRCm39)	L1171H	probably damaging	Het
Drc1	G	T	5: 30,500,075 (GRCm39)	V103F	probably benign	Het
Ep400	A	T	5: 110,866,957 (GRCm39)	N1062K	unknown	Het
Faap20	A	C	4: 155,335,010 (GRCm39)	E37A	possibly damaging	Het
Foxa2	A	G	2: 147,886,086 (GRCm39)	F243S	probably damaging	Het
Gzf1	T	C	2: 148,525,856 (GRCm39)	M109T	probably damaging	Het
Itch	T	A	2: 155,054,259 (GRCm39)	M701K	probably benign	Het
Kpna1	T	C	16: 35,841,939 (GRCm39)	Y280H	possibly damaging	Het
L1td1	A	G	4: 98,625,874 (GRCm39)		probably null	Het
Lrrc37a	T	C	11: 103,392,293 (GRCm39)	Q1044R	probably benign	Het
Lrrc52	A	T	1: 167,293,937 (GRCm39)	I116N	probably damaging	Het
Mbd5	A	G	2: 49,147,698 (GRCm39)	E636G	probably damaging	Het
Mrpl40	T	C	16: 18,694,125 (GRCm39)	H29R	probably benign	Het
Nrip1	T	C	16: 76,088,173 (GRCm39)	Y1128C	probably damaging	Het
Or10d3	G	T	9: 39,461,273 (GRCm39)	A298D	probably damaging	Het
Or4g16	A	G	2: 111,136,655 (GRCm39)	Y35C	probably damaging	Het
Or5ak20	A	G	2: 85,184,202 (GRCm39)	S23P	possibly damaging	Het
Or8c8	A	G	9: 38,165,126 (GRCm39)	I135V	probably benign	Het
Pard3	A	T	8: 128,337,080 (GRCm39)	E1232V	probably damaging	Het
Pcsk1	C	A	13: 75,274,845 (GRCm39)	A478D	probably benign	Het
Pkd1l2	T	C	8: 117,784,177 (GRCm39)	Y700C	probably damaging	Het
Pknox2	T	C	9: 36,821,816 (GRCm39)	N270D	probably benign	Het
Plcb2	T	C	2: 118,554,246 (GRCm39)	N69S	probably benign	Het
Reep1	T	A	6: 71,733,426 (GRCm39)		probably null	Het
Sash1	A	T	10: 8,605,741 (GRCm39)	M883K	probably benign	Het
Secisbp2l	C	T	2: 125,582,657 (GRCm39)	G933D	possibly damaging	Het
Septin4	A	G	11: 87,480,637 (GRCm39)	N405D	possibly damaging	Het
Serpinb3b	T	C	1: 107,083,208 (GRCm39)	I231M	possibly damaging	Het
Serping1	A	G	2: 84,600,195 (GRCm39)	S322P	probably damaging	Het
Slc7a2	T	C	8: 41,358,658 (GRCm39)	Y334H	probably benign	Het
Spink5	G	T	18: 44,153,891 (GRCm39)	E1013*	probably null	Het
Thoc3	A	T	13: 54,615,646 (GRCm39)	N139K	probably benign	Het
Tns2	C	T	15: 102,017,369 (GRCm39)	R281C	probably damaging	Het
Tubb2b	T	A	13: 34,314,198 (GRCm39)	I7F	possibly damaging	Het
Upf2	A	G	2: 5,966,271 (GRCm39)	D297G	unknown	Het
Vmn2r18	T	C	5: 151,508,441 (GRCm39)	I228V	possibly damaging	Het
Vmn2r98	A	C	17: 19,300,698 (GRCm39)	S567R	probably benign	Het
Vwa5a	T	C	9: 38,639,376 (GRCm39)	I369T	probably damaging	Het
Yjefn3	A	C	8: 70,342,095 (GRCm39)	F42V	probably damaging	Het
Zfp472	A	T	17: 33,195,257 (GRCm39)	R69*	probably null	Het
Zfp536	T	C	7: 37,178,814 (GRCm39)	S200G	probably benign	Het
Zfp970	T	A	2: 177,166,614 (GRCm39)		probably null	Het

Other mutations in Pcif1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01161:Pcif1	APN	2	164,727,708 (GRCm39)	missense	probably damaging	1.00
IGL01598:Pcif1	APN	2	164,728,531 (GRCm39)	missense	possibly damaging	0.86
R0313:Pcif1	UTSW	2	164,726,339 (GRCm39)	missense	probably damaging	0.97
R0329:Pcif1	UTSW	2	164,731,364 (GRCm39)	missense	probably damaging	1.00
R0330:Pcif1	UTSW	2	164,731,364 (GRCm39)	missense	probably damaging	1.00
R1070:Pcif1	UTSW	2	164,731,058 (GRCm39)	missense	probably benign	0.01
R1350:Pcif1	UTSW	2	164,728,687 (GRCm39)	missense	probably damaging	0.99
R1467:Pcif1	UTSW	2	164,731,058 (GRCm39)	missense	probably benign	0.01
R1467:Pcif1	UTSW	2	164,731,058 (GRCm39)	missense	probably benign	0.01
R1583:Pcif1	UTSW	2	164,728,647 (GRCm39)	missense	probably damaging	1.00
R1640:Pcif1	UTSW	2	164,727,603 (GRCm39)	missense	probably benign
R1852:Pcif1	UTSW	2	164,730,386 (GRCm39)	missense	probably damaging	0.97
R2571:Pcif1	UTSW	2	164,726,131 (GRCm39)	missense	probably damaging	1.00
R3879:Pcif1	UTSW	2	164,727,878 (GRCm39)	missense	probably benign	0.40
R4956:Pcif1	UTSW	2	164,731,610 (GRCm39)	missense	probably damaging	1.00
R5792:Pcif1	UTSW	2	164,727,299 (GRCm39)	missense	probably damaging	0.97
R5913:Pcif1	UTSW	2	164,726,412 (GRCm39)	intron	probably benign
R6798:Pcif1	UTSW	2	164,727,711 (GRCm39)	missense	possibly damaging	0.94
R6913:Pcif1	UTSW	2	164,726,224 (GRCm39)	critical splice acceptor site	probably null
R7359:Pcif1	UTSW	2	164,726,251 (GRCm39)	missense	probably damaging	1.00
R7453:Pcif1	UTSW	2	164,731,550 (GRCm39)	missense	possibly damaging	0.94
R7453:Pcif1	UTSW	2	164,730,284 (GRCm39)	missense	probably damaging	1.00
R7917:Pcif1	UTSW	2	164,730,392 (GRCm39)	missense	probably benign	0.08
R8031:Pcif1	UTSW	2	164,728,442 (GRCm39)	missense	probably damaging	1.00
R8474:Pcif1	UTSW	2	164,730,272 (GRCm39)	missense	probably damaging	1.00
R8519:Pcif1	UTSW	2	164,726,303 (GRCm39)	missense	probably damaging	1.00
R8553:Pcif1	UTSW	2	164,728,417 (GRCm39)	missense	probably damaging	1.00
R8766:Pcif1	UTSW	2	164,727,346 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- CAGAAACTGCTGGAGAGCTC -3'
(R):5'- TAAGTGGGGTGAGGCTCTCTAC -3'

Sequencing Primer
(F):5'- CATCGTGTTCATCCCGGAGTG -3'
(R):5'- ACTAGGGCCCTGTTCCC -3'

Posted On

2014-10-16