Mutagenetix > Incidental Mutation

Incidental Mutation 'R5121:Myb'

393046

Institutional Source

Beutler Lab

Gene Symbol

Myb

Ensembl Gene

ENSMUSG00000019982

Gene Name

myeloblastosis oncogene

Synonyms

c-myb

MMRRC Submission

042709-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R5121 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

21000834-21036883 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 21002137 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Leucine at position 616 (M616L)

Ref Sequence

ENSEMBL: ENSMUSP00000020158 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020158] [ENSMUST00000188495]

AlphaFold

P06876

PDB Structure

CRYSTAL STRUCTURE OF C-MYB R1 [X-RAY DIFFRACTION]
CRYSTAL STRUCTURE OF C-MYB R2R3 [X-RAY DIFFRACTION]
CRYSTAL STRUCTURE OF C-MYB R2 [X-RAY DIFFRACTION]
CRYSTAL STRUCTURE OF C-MYB R2 V103L MUTANT [X-RAY DIFFRACTION]
CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX1 [X-RAY DIFFRACTION]
CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX2 [X-RAY DIFFRACTION]
STRUCTURE OF MYB TRANSFORMING PROTEIN, NMR, MINIMIZED AVERAGE STRUCTURE [SOLUTION NMR]
STRUCTURE OF MYB TRANSFORMING PROTEIN, NMR, 20 STRUCTURES [SOLUTION NMR]
MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 1 [SOLUTION NMR]
MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 1 [SOLUTION NMR]
>> 8 additional structures at PDB <<

Predicted Effect

probably benign
Transcript: ENSMUST00000020158
AA Change: M616L

PolyPhen 2 Score 0.008 (Sensitivity: 0.96; Specificity: 0.76)

SMART Domains

Protein: ENSMUSP00000020158
Gene: ENSMUSG00000019982
AA Change: M616L

Domain	Start	End	E-Value	Type
low complexity region	7	27	N/A	INTRINSIC
SANT	39	88	9.52e-20	SMART
SANT	91	140	2.04e-19	SMART
SANT	143	191	1.75e-18	SMART
low complexity region	227	239	N/A	INTRINSIC
Pfam:LMSTEN	267	313	4e-29	PFAM
Pfam:Cmyb_C	399	559	1.5e-64	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000188495
AA Change: M735L

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000139699
Gene: ENSMUSG00000019982
AA Change: M735L

Domain	Start	End	E-Value	Type
low complexity region	7	27	N/A	INTRINSIC
SANT	39	88	9.52e-20	SMART
SANT	91	140	2.04e-19	SMART
SANT	143	191	1.75e-18	SMART
low complexity region	227	239	N/A	INTRINSIC
Pfam:LMSTEN	266	313	3.6e-32	PFAM
low complexity region	409	421	N/A	INTRINSIC
Pfam:Cmyb_C	516	682	8.5e-66	PFAM

Meta Mutation Damage Score

0.0757

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.1%
20x: 91.7%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein with three HTH DNA-binding domains that functions as a transcription regulator. This protein plays an essential role in the regulation of hematopoiesis. This gene may be aberrently expressed or rearranged or undergo translocation in leukemias and lymphomas, and is considered to be an oncogene. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2016]
PHENOTYPE: Mice homozygous for deficient alleles of this gene display severe hematopoietic abnormalities. Red and white blood cells and platelets are all affected. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 101 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acvr1c	A	G	2: 58,171,662 (GRCm39)	I234T	probably damaging	Het
Adam24	A	G	8: 41,132,550 (GRCm39)	E6G	probably damaging	Het
Amz1	A	G	5: 140,729,919 (GRCm39)	D151G	probably benign	Het
Arhgap24	T	C	5: 102,989,201 (GRCm39)	L10P	probably damaging	Het
Arhgap25	T	G	6: 87,509,846 (GRCm39)	N8T	probably benign	Het
Arsi	T	G	18: 61,050,511 (GRCm39)	F465V	probably damaging	Het
Atp2c1	A	G	9: 105,326,024 (GRCm39)	V293A	probably damaging	Het
Bzw2	A	G	12: 36,154,350 (GRCm39)	L340P	probably damaging	Het
Camkmt	C	T	17: 85,404,009 (GRCm39)	T77I	probably benign	Het
Camsap1	G	T	2: 25,825,562 (GRCm39)	Q1375K	probably benign	Het
Catsper2	G	T	2: 121,227,604 (GRCm39)		probably null	Het
Cd163	T	C	6: 124,294,948 (GRCm39)	C671R	probably damaging	Het
Cdk7	T	C	13: 100,854,192 (GRCm39)		probably null	Het
Cfi	C	T	3: 129,666,726 (GRCm39)	P483L	probably damaging	Het
Chn2	C	T	6: 54,195,546 (GRCm39)	L72F	possibly damaging	Het
Cimip4	C	T	15: 78,270,373 (GRCm39)	E132K	probably benign	Het
Cntn2	C	A	1: 132,444,798 (GRCm39)	E363*	probably null	Het
Crebbp	T	C	16: 3,911,375 (GRCm39)	E999G	probably damaging	Het
Cspp1	T	A	1: 10,196,688 (GRCm39)	N900K	probably damaging	Het
Cts3	A	C	13: 61,715,409 (GRCm39)	I141M	probably benign	Het
Cwc27	A	T	13: 104,940,861 (GRCm39)	V166D	probably damaging	Het
Defb26	T	C	2: 152,350,085 (GRCm39)	E65G	possibly damaging	Het
Dnah8	A	G	17: 31,029,327 (GRCm39)	T4099A	probably benign	Het
Eml6	A	G	11: 29,694,606 (GRCm39)	F1953L	probably benign	Het
Etl4	T	A	2: 20,344,922 (GRCm39)		probably null	Het
Fbln1	A	G	15: 85,121,872 (GRCm39)	E331G	probably damaging	Het
Gabra4	G	A	5: 71,729,546 (GRCm39)	H76Y	probably benign	Het
Gcat	T	C	15: 78,919,482 (GRCm39)	V149A	probably damaging	Het
Glp2r	A	T	11: 67,612,926 (GRCm39)		probably null	Het
Gm572	T	C	4: 148,751,302 (GRCm39)		probably null	Het
Golgb1	T	C	16: 36,739,620 (GRCm39)	V2653A	probably damaging	Het
Grap2	G	A	15: 80,530,345 (GRCm39)	R155Q	possibly damaging	Het
Gspt1	T	A	16: 11,041,165 (GRCm39)	I533L	probably damaging	Het
Gypa	A	T	8: 81,222,977 (GRCm39)	Y27F	unknown	Het
Hipk4	G	A	7: 27,228,917 (GRCm39)	V456I	probably benign	Het
Homer2	A	T	7: 81,299,311 (GRCm39)	D51E	probably benign	Het
Hspa1b	A	T	17: 35,176,980 (GRCm39)	V335E	possibly damaging	Het
Ift122	A	G	6: 115,889,495 (GRCm39)	T827A	probably benign	Het
Igkv1-35	T	C	6: 69,988,119 (GRCm39)	N58S	probably benign	Het
Kat6b	A	T	14: 21,669,326 (GRCm39)	H297L	probably damaging	Het
Kirrel3	G	T	9: 34,924,601 (GRCm39)	G296W	probably damaging	Het
Klhl17	A	G	4: 156,315,082 (GRCm39)	V525A	probably benign	Het
Lrrn1	G	T	6: 107,546,168 (GRCm39)	R655S	possibly damaging	Het
Ltk	T	C	2: 119,583,708 (GRCm39)	N256D	probably damaging	Het
Mill2	G	A	7: 18,590,591 (GRCm39)	G209S	probably benign	Het
Mmp27	A	T	9: 7,581,369 (GRCm39)	H544L	probably benign	Het
Mphosph10	A	G	7: 64,039,344 (GRCm39)	S209P	probably damaging	Het
Mphosph8	A	T	14: 56,914,003 (GRCm39)	K415*	probably null	Het
Myo15b	C	T	11: 115,776,880 (GRCm39)	R867W	probably damaging	Het
Myo18b	A	T	5: 113,022,346 (GRCm39)		probably benign	Het
Nip7	A	G	8: 107,783,589 (GRCm39)	E8G	possibly damaging	Het
Optn	T	A	2: 5,050,917 (GRCm39)	I155F	probably benign	Het
Or2f1b	T	A	6: 42,739,931 (GRCm39)	L315*	probably null	Het
Or4f62	A	T	2: 111,986,631 (GRCm39)	M112L	possibly damaging	Het
Or52e4	A	G	7: 104,705,689 (GRCm39)	T79A	possibly damaging	Het
Or5c1	T	G	2: 37,222,601 (GRCm39)	F281V	probably damaging	Het
Or6b6	T	C	7: 106,571,438 (GRCm39)	I38V	probably benign	Het
Papolb	A	T	5: 142,514,592 (GRCm39)	H350Q	probably benign	Het
Pappa2	T	A	1: 158,666,197 (GRCm39)	M1128L	probably benign	Het
Pcdhb5	T	A	18: 37,454,170 (GRCm39)	N183K	probably benign	Het
Pde12	G	T	14: 26,390,577 (GRCm39)	S44*	probably null	Het
Peg3	T	C	7: 6,713,288 (GRCm39)	K645E	probably benign	Het
Pkd1	C	T	17: 24,792,437 (GRCm39)	R1375C	probably benign	Het
Plekha5	G	A	6: 140,525,200 (GRCm39)	E21K	probably damaging	Het
Plk2	C	T	13: 110,535,958 (GRCm39)	P554L	probably benign	Het
Pnkp	C	T	7: 44,511,827 (GRCm39)	S113L	probably damaging	Het
Polg	A	T	7: 79,114,353 (GRCm39)	W203R	probably damaging	Het
Ppcdc	A	G	9: 57,328,446 (GRCm39)	V65A	possibly damaging	Het
Ppm1m	T	A	9: 106,073,004 (GRCm39)	Q353L	probably benign	Het
Ppp1r13l	G	C	7: 19,104,020 (GRCm39)	R167P	probably damaging	Het
Ppp1r9b	T	A	11: 94,887,479 (GRCm39)	V497E	probably damaging	Het
Prpf6	T	A	2: 181,277,836 (GRCm39)	H399Q	probably benign	Het
Psg25	T	A	7: 18,260,461 (GRCm39)	I146F	possibly damaging	Het
Rasgef1c	A	T	11: 49,851,256 (GRCm39)	Q116L	probably damaging	Het
Rbbp9	A	G	2: 144,392,676 (GRCm39)	V8A	possibly damaging	Het
Rfk	T	C	19: 17,376,930 (GRCm39)	F144S	probably damaging	Het
Rfwd3	A	C	8: 112,009,385 (GRCm39)		probably null	Het
Rhpn1	T	C	15: 75,581,109 (GRCm39)	I117T	probably damaging	Het
Sars2	A	T	7: 28,447,333 (GRCm39)	N244Y	probably damaging	Het
Scnn1b	A	T	7: 121,502,110 (GRCm39)	H256L	probably benign	Het
Sgcz	G	A	8: 38,006,821 (GRCm39)	T195I	probably damaging	Het
Sh3gl2	T	A	4: 85,297,494 (GRCm39)	H157Q	probably benign	Het
Spen	T	A	4: 141,203,410 (GRCm39)	Q1739L	probably benign	Het
Susd1	G	T	4: 59,379,657 (GRCm39)	S323R	possibly damaging	Het
Szt2	T	C	4: 118,242,641 (GRCm39)	E1482G	possibly damaging	Het
Tex15	A	T	8: 34,061,794 (GRCm39)	K408I	probably damaging	Het
Trem1	T	A	17: 48,539,864 (GRCm39)	F14L	probably null	Het
Trim26	G	T	17: 37,161,958 (GRCm39)	E126*	probably null	Het
Trpv3	T	C	11: 73,168,660 (GRCm39)		probably null	Het
Ttn	T	A	2: 76,746,835 (GRCm39)		probably null	Het
Ubap1	C	T	4: 41,379,688 (GRCm39)	L301F	probably benign	Het
Uchl1	T	C	5: 66,833,780 (GRCm39)	M12T	probably benign	Het
Vill	C	T	9: 118,899,093 (GRCm39)	T253I	possibly damaging	Het
Vmn2r107	C	T	17: 20,576,015 (GRCm39)	T115I	probably benign	Het
Vmn2r98	T	C	17: 19,273,815 (GRCm39)	S21P	probably benign	Het
Wapl	A	G	14: 34,399,119 (GRCm39)	K63E	probably benign	Het
Wnt2	T	C	6: 18,023,125 (GRCm39)	K175E	possibly damaging	Het
Zfp592	T	C	7: 80,673,309 (GRCm39)	L91P	probably damaging	Het
Zfp74	T	C	7: 29,631,932 (GRCm39)		probably null	Het
Zglp1	A	T	9: 20,973,957 (GRCm39)	I243N	probably benign	Het
Zranb1	A	G	7: 132,551,916 (GRCm39)	E215G	probably benign	Het

Other mutations in Myb

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00654:Myb	APN	10	21,017,725 (GRCm39)	missense	probably damaging	0.99
IGL00707:Myb	APN	10	21,024,283 (GRCm39)	missense	probably damaging	1.00
IGL00796:Myb	APN	10	21,017,698 (GRCm39)	missense	probably benign	0.00
IGL01012:Myb	APN	10	21,022,159 (GRCm39)	missense	probably benign	0.03
IGL01082:Myb	APN	10	21,028,843 (GRCm39)	missense	probably damaging	1.00
IGL01365:Myb	APN	10	21,028,401 (GRCm39)	missense	probably benign	0.31
IGL01906:Myb	APN	10	21,028,533 (GRCm39)	missense	probably damaging	1.00
IGL02560:Myb	APN	10	21,028,347 (GRCm39)	missense	probably damaging	1.00
Huang_river	UTSW	10	21,028,516 (GRCm39)	missense	probably damaging	1.00
PIT4495001:Myb	UTSW	10	21,028,521 (GRCm39)	missense	probably damaging	0.98
R0385:Myb	UTSW	10	21,030,611 (GRCm39)	missense	possibly damaging	0.73
R0442:Myb	UTSW	10	21,002,095 (GRCm39)	missense	probably benign	0.05
R0759:Myb	UTSW	10	21,020,927 (GRCm39)	missense	probably benign	0.01
R0882:Myb	UTSW	10	21,032,259 (GRCm39)	missense	possibly damaging	0.75
R0920:Myb	UTSW	10	21,002,133 (GRCm39)	missense	possibly damaging	0.80
R1401:Myb	UTSW	10	21,028,844 (GRCm39)	missense	probably damaging	1.00
R1651:Myb	UTSW	10	21,002,097 (GRCm39)	missense	probably damaging	1.00
R1752:Myb	UTSW	10	21,032,336 (GRCm39)	missense	possibly damaging	0.89
R1879:Myb	UTSW	10	21,017,876 (GRCm39)	missense	probably benign	0.24
R1971:Myb	UTSW	10	21,016,555 (GRCm39)	missense	probably benign	0.00
R4355:Myb	UTSW	10	21,028,516 (GRCm39)	missense	probably damaging	1.00
R4611:Myb	UTSW	10	21,021,223 (GRCm39)	missense	probably damaging	1.00
R4650:Myb	UTSW	10	21,028,840 (GRCm39)	missense	probably damaging	1.00
R4888:Myb	UTSW	10	21,002,137 (GRCm39)	missense	probably benign	0.01
R5922:Myb	UTSW	10	21,028,826 (GRCm39)	missense	probably damaging	1.00
R5955:Myb	UTSW	10	21,028,398 (GRCm39)	missense	probably damaging	1.00
R6116:Myb	UTSW	10	21,030,653 (GRCm39)	missense	probably damaging	1.00
R6150:Myb	UTSW	10	21,017,668 (GRCm39)	missense	probably damaging	1.00
R6207:Myb	UTSW	10	21,021,221 (GRCm39)	missense	probably benign
R6656:Myb	UTSW	10	21,028,844 (GRCm39)	missense	probably damaging	1.00
R6801:Myb	UTSW	10	21,020,865 (GRCm39)	splice site	probably null
R6824:Myb	UTSW	10	21,021,019 (GRCm39)	missense	probably benign	0.00
R6884:Myb	UTSW	10	21,028,431 (GRCm39)	missense	probably damaging	1.00
R6977:Myb	UTSW	10	21,028,551 (GRCm39)	missense	probably damaging	0.96
R7562:Myb	UTSW	10	21,017,653 (GRCm39)	splice site	probably null
R7651:Myb	UTSW	10	21,032,273 (GRCm39)	missense	probably damaging	1.00
R7747:Myb	UTSW	10	21,032,324 (GRCm39)	missense	possibly damaging	0.89
R8346:Myb	UTSW	10	21,002,136 (GRCm39)	missense	probably benign	0.00
R8683:Myb	UTSW	10	21,026,405 (GRCm39)	missense	possibly damaging	0.53
R8829:Myb	UTSW	10	21,021,130 (GRCm39)	missense	probably damaging	0.96
R9227:Myb	UTSW	10	21,030,612 (GRCm39)	missense	probably benign	0.03
R9228:Myb	UTSW	10	21,030,612 (GRCm39)	missense	probably benign	0.03
R9240:Myb	UTSW	10	21,016,500 (GRCm39)	missense	probably damaging	1.00
R9304:Myb	UTSW	10	21,028,516 (GRCm39)	missense	probably damaging	1.00
R9408:Myb	UTSW	10	21,026,275 (GRCm39)	missense	probably benign	0.21
R9517:Myb	UTSW	10	21,030,612 (GRCm39)	missense	probably benign	0.03
R9576:Myb	UTSW	10	21,030,612 (GRCm39)	missense	probably benign	0.03
R9577:Myb	UTSW	10	21,030,612 (GRCm39)	missense	probably benign	0.03
R9610:Myb	UTSW	10	21,030,627 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- AAAATCAGGCTCTTCTCTCAGC -3'
(R):5'- TTGGAAAACTGCCTGCGAG -3'

Sequencing Primer
(F):5'- TTCTCTCAGCCATGGAGCG -3'
(R):5'- GGCATTCCAAGAACAAGATGTTAC -3'

Posted On

2016-06-15