Incidental Mutation 'R5656:4933405L10Rik'
ID 442331
Institutional Source Beutler Lab
Gene Symbol 4933405L10Rik
Ensembl Gene ENSMUSG00000013158
Gene Name RIKEN cDNA 4933405L10 gene
Synonyms
MMRRC Submission 043302-MU
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.072) question?
Stock # R5656 (G1)
Quality Score 198
Status Not validated
Chromosome 8
Chromosomal Location 105707655-105710246 bp(+) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) A to G at 105709512 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Serine to Glycine at position 139 (S139G)
Ref Sequence ENSEMBL: ENSMUSP00000148838 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000013294] [ENSMUST00000013299] [ENSMUST00000013302] [ENSMUST00000211852] [ENSMUST00000212061]
AlphaFold no structure available at present
Predicted Effect probably benign
Transcript: ENSMUST00000013294
SMART Domains Protein: ENSMUSP00000013294
Gene: ENSMUSG00000013150

DomainStartEndE-ValueType
Pfam:GFO_IDH_MocA 6 119 3.7e-14 PFAM
low complexity region 169 180 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000013299
SMART Domains Protein: ENSMUSP00000013299
Gene: ENSMUSG00000013155

DomainStartEndE-ValueType
low complexity region 220 236 N/A INTRINSIC
Pfam:Enkurin 243 339 6.3e-26 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000013302
AA Change: S139G

PolyPhen 2 Score 0.317 (Sensitivity: 0.90; Specificity: 0.89)
SMART Domains Protein: ENSMUSP00000013302
Gene: ENSMUSG00000013158
AA Change: S139G

DomainStartEndE-ValueType
Pfam:DUF4691 1 162 3.3e-71 PFAM
low complexity region 200 216 N/A INTRINSIC
low complexity region 252 275 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000211852
AA Change: S139G

PolyPhen 2 Score 0.317 (Sensitivity: 0.90; Specificity: 0.89)
Predicted Effect probably benign
Transcript: ENSMUST00000212061
Predicted Effect noncoding transcript
Transcript: ENSMUST00000212144
Predicted Effect noncoding transcript
Transcript: ENSMUST00000212162
Predicted Effect noncoding transcript
Transcript: ENSMUST00000212716
Meta Mutation Damage Score 0.0963 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 97.1%
  • 20x: 94.9%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 60 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adrb3 T C 8: 27,227,377 D348G probably damaging Het
Atg2b A G 12: 105,621,328 V1959A probably benign Het
Bicral G A 17: 46,808,369 T742M probably damaging Het
Bub1b T A 2: 118,605,431 I60N probably damaging Het
Ccdc162 A G 10: 41,569,934 V414A probably benign Het
Cd22 T G 7: 30,869,773 Y612S probably damaging Het
Cd68 T A 11: 69,664,421 I320F probably damaging Het
Clca3a2 A T 3: 144,797,632 N852K probably benign Het
Cpa6 T A 1: 10,329,514 H363L probably benign Het
Ddx18 A T 1: 121,561,358 L320Q probably damaging Het
Dnah5 A G 15: 28,421,064 D3849G probably benign Het
Eci1 T A 17: 24,437,309 N164K probably damaging Het
Efs T C 14: 54,917,127 T552A probably damaging Het
Fbp1 C A 13: 62,875,196 V96L probably damaging Het
Gtf3c1 T A 7: 125,662,654 N1139I probably benign Het
Gucy1b2 T C 14: 62,422,981 Y152C probably damaging Het
Gxylt1 A T 15: 93,245,661 L362Q probably damaging Het
Iqcd A G 5: 120,605,126 probably null Het
Klhl41 T A 2: 69,683,532 I585N possibly damaging Het
Map6 A G 7: 99,336,298 K470E probably damaging Het
Mast3 T C 8: 70,786,221 T496A probably damaging Het
Mbd6 A T 10: 127,285,286 probably benign Het
Melk A G 4: 44,312,237 K183R possibly damaging Het
Mta1 T C 12: 113,123,139 V152A probably damaging Het
Naa35 G A 13: 59,622,866 probably benign Het
Nav3 A C 10: 109,764,633 S1378A probably damaging Het
Ncapd3 T A 9: 27,051,645 D415E possibly damaging Het
Nlrp4f G A 13: 65,190,871 R651* probably null Het
Olfr1480 A G 19: 13,530,380 T280A probably benign Het
Olfr397 T A 11: 73,964,710 M34K probably damaging Het
Olfr497 A G 7: 108,422,618 I16V probably benign Het
P2rx7 A T 5: 122,673,717 R364W probably damaging Het
Phactr2 T C 10: 13,388,703 D2G probably benign Het
Phc3 G T 3: 30,965,866 S28R probably damaging Het
Ppfia1 A T 7: 144,519,974 probably null Het
Prdm10 C T 9: 31,353,417 T667M probably benign Het
Pwwp2b T A 7: 139,255,971 S443T possibly damaging Het
Pzp T C 6: 128,490,072 T1113A probably damaging Het
Rapgef6 A G 11: 54,636,136 E551G possibly damaging Het
Sec23ip A G 7: 128,776,784 Y774C probably damaging Het
Setdb2 T C 14: 59,419,118 D266G probably damaging Het
Shank1 T C 7: 44,352,886 V1343A probably benign Het
Slf2 T A 19: 44,973,235 D1064E probably benign Het
Slu7 A G 11: 43,443,418 K424E probably benign Het
Smg1 A T 7: 118,154,664 probably benign Het
Sptlc2 A T 12: 87,346,761 L264Q probably damaging Het
Sra1 A G 18: 36,678,407 S93P probably damaging Het
Sult1c1 T C 17: 53,964,652 E169G probably benign Het
Sv2a A G 3: 96,185,572 D196G probably damaging Het
Tbc1d22b A G 17: 29,594,780 I362M probably damaging Het
Tenm3 T C 8: 48,228,762 D2611G probably damaging Het
Tmem43 T C 6: 91,480,708 F191L probably benign Het
Trbv13-2 T A 6: 41,121,694 Y68N probably benign Het
Ttn T G 2: 76,774,654 D18312A possibly damaging Het
Ublcp1 A G 11: 44,465,606 V95A probably damaging Het
Usp17ld A G 7: 103,250,840 V295A probably damaging Het
Vmn1r29 T A 6: 58,308,167 L291M possibly damaging Het
Vsig10l C T 7: 43,464,151 R176* probably null Het
Zbtb46 A G 2: 181,423,417 probably null Het
Zfp644 A G 5: 106,637,982 V233A probably benign Het
Other mutations in 4933405L10Rik
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01738:4933405L10Rik APN 8 105710036 missense probably damaging 0.98
IGL01845:4933405L10Rik APN 8 105708935 missense probably benign
R0096:4933405L10Rik UTSW 8 105708931 splice site probably null
R0096:4933405L10Rik UTSW 8 105708931 splice site probably null
R0396:4933405L10Rik UTSW 8 105709780 missense probably benign 0.06
R0711:4933405L10Rik UTSW 8 105708931 splice site probably null
R1037:4933405L10Rik UTSW 8 105709512 missense probably benign 0.32
R1816:4933405L10Rik UTSW 8 105709859 missense possibly damaging 0.50
R1843:4933405L10Rik UTSW 8 105708974 missense probably damaging 0.98
R4332:4933405L10Rik UTSW 8 105709724 missense possibly damaging 0.92
R4868:4933405L10Rik UTSW 8 105710097 makesense probably null
R5072:4933405L10Rik UTSW 8 105709569 missense possibly damaging 0.71
R5285:4933405L10Rik UTSW 8 105708465 missense probably benign
R6196:4933405L10Rik UTSW 8 105709922 missense possibly damaging 0.92
R6524:4933405L10Rik UTSW 8 105709009 missense possibly damaging 0.71
R6657:4933405L10Rik UTSW 8 105708818 missense probably damaging 0.98
R9578:4933405L10Rik UTSW 8 105709873 missense probably damaging 0.99
Z1088:4933405L10Rik UTSW 8 105709763 missense probably damaging 1.00
Z1177:4933405L10Rik UTSW 8 105709973 missense possibly damaging 0.91
Z1177:4933405L10Rik UTSW 8 105709975 missense possibly damaging 0.73
Predicted Primers PCR Primer
(F):5'- GACTGAAGCCTGCCTCTTTCAG -3'
(R):5'- TATTGGTACAGTGGCCGCAG -3'

Sequencing Primer
(F):5'- AGGCCTCTTGTCCCAGGTTTG -3'
(R):5'- GGGCTTTTCCTGCAAGAAC -3'
Posted On 2016-11-09