Mutagenetix > Incidental Mutation

Incidental Mutation 'R8322:Cnot10'

642024

Institutional Source

Beutler Lab

Gene Symbol

Cnot10

Ensembl Gene

ENSMUSG00000056167

Gene Name

CCR4-NOT transcription complex, subunit 10

Synonyms

2600001P13Rik

MMRRC Submission

067798-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R8322 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

114414946-114469252 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 114456537 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 166 (E166G)

Ref Sequence

ENSEMBL: ENSMUSP00000064840 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000070117]

AlphaFold

Q8BH15

Predicted Effect

probably damaging
Transcript: ENSMUST00000070117
AA Change: E166G

PolyPhen 2 Score 0.987 (Sensitivity: 0.73; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000064840
Gene: ENSMUSG00000056167
AA Change: E166G

Domain	Start	End	E-Value	Type
Blast:TPR	27	60	2e-10	BLAST
coiled coil region	73	107	N/A	INTRINSIC
TPR	110	143	4.32e1	SMART
low complexity region	182	198	N/A	INTRINSIC
TPR	293	326	3.37e-2	SMART
TPR	355	388	6.75e1	SMART
low complexity region	496	508	N/A	INTRINSIC
TPR	643	676	7.87e0	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.1%

Validation Efficiency

100% (64/64)

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700030K09Rik	A	G	8: 73,199,219 (GRCm39)	S209G	probably benign	Het
Aars1	T	C	8: 111,772,160 (GRCm39)	L450P	possibly damaging	Het
Acsbg1	G	A	9: 54,523,268 (GRCm39)	T453M	probably benign	Het
Aff3	A	G	1: 38,220,742 (GRCm39)	S1100P	possibly damaging	Het
B4galt5	G	A	2: 167,190,849 (GRCm39)	A35V	probably benign	Het
C1qtnf1	T	C	11: 118,338,683 (GRCm39)	S118P	probably benign	Het
Ceacam20	A	T	7: 19,705,628 (GRCm39)	E206D	probably damaging	Het
Celsr3	T	C	9: 108,725,993 (GRCm39)	L3066P	probably damaging	Het
Cers3	T	G	7: 66,439,386 (GRCm39)	L299R	probably damaging	Het
Cfhr2	G	T	1: 139,738,696 (GRCm39)	H288Q	probably benign	Het
Cnot1	A	T	8: 96,496,472 (GRCm39)	M278K	probably benign	Het
Ctsd	T	A	7: 141,939,197 (GRCm39)	D76V	probably damaging	Het
Cyp1a1	T	A	9: 57,610,003 (GRCm39)	F472L	probably damaging	Het
Dusp19	T	A	2: 80,454,635 (GRCm39)	D118E	probably damaging	Het
Dusp29	A	T	14: 21,752,950 (GRCm39)	D65E	probably damaging	Het
Eif2ak3	C	A	6: 70,855,903 (GRCm39)	R236S	probably damaging	Het
Fam169a	A	G	13: 97,259,260 (GRCm39)	T439A	probably benign	Het
Flg	T	C	3: 93,191,639 (GRCm39)	Y11H	unknown	Het
Fn1	T	A	1: 71,667,618 (GRCm39)	I792L	probably benign	Het
Fzd7	T	C	1: 59,522,242 (GRCm39)	S42P	probably benign	Het
Gimap3	A	G	6: 48,742,370 (GRCm39)	S187P	possibly damaging	Het
Gli1	C	A	10: 127,167,477 (GRCm39)	R592L	probably damaging	Het
Glt8d2	A	T	10: 82,498,037 (GRCm39)	I124N	probably damaging	Het
Hbp1	C	T	12: 31,983,387 (GRCm39)	D356N	probably damaging	Het
Hif1a	T	C	12: 73,986,373 (GRCm39)	S367P	probably benign	Het
Hspg2	C	G	4: 137,246,290 (GRCm39)	P1023A	possibly damaging	Het
Itpr1	C	A	6: 108,365,190 (GRCm39)	N880K	probably benign	Het
Kank1	T	C	19: 25,355,842 (GRCm39)		probably benign	Het
Kat2a	T	C	11: 100,603,116 (GRCm39)	T39A	unknown	Het
Kcnk2	T	A	1: 189,072,046 (GRCm39)	Q98L	probably benign	Het
Kcnn4	G	A	7: 24,083,545 (GRCm39)	G409S	probably benign	Het
Klrb1	T	A	6: 128,690,576 (GRCm39)	I49F	probably damaging	Het
Larp4	G	A	15: 99,908,237 (GRCm39)	V573I	probably benign	Het
Lrpprc	A	G	17: 85,047,496 (GRCm39)		probably null	Het
Mybl1	A	G	1: 9,746,506 (GRCm39)	S385P	probably damaging	Het
Nup62	T	C	7: 44,478,440 (GRCm39)	S152P	possibly damaging	Het
Obi1	A	T	14: 104,717,091 (GRCm39)	D427E	probably damaging	Het
Or11a4	A	G	17: 37,536,241 (GRCm39)	Y75C	probably damaging	Het
Pcdh12	G	A	18: 38,414,630 (GRCm39)	Q832*	probably null	Het
Pcid2	A	G	8: 13,128,555 (GRCm39)	I368T	probably damaging	Het
Pcnx4	T	A	12: 72,603,437 (GRCm39)	F492I	probably damaging	Het
Pi4ka	A	G	16: 17,175,437 (GRCm39)	Y464H		Het
Plekhg5	T	G	4: 152,189,201 (GRCm39)	S260R	possibly damaging	Het
Prkdc	T	A	16: 15,532,005 (GRCm39)		probably benign	Het
Prr14	A	T	7: 127,072,999 (GRCm39)	E115D	probably benign	Het
Rab3gap2	A	T	1: 184,978,877 (GRCm39)	N285Y	probably benign	Het
Rhot1	T	A	11: 80,148,386 (GRCm39)	C609S	possibly damaging	Het
Rnf123	T	C	9: 107,945,706 (GRCm39)	Q360R	probably benign	Het
Rrp12	T	C	19: 41,868,658 (GRCm39)	T562A	probably benign	Het
Rundc1	G	A	11: 101,322,992 (GRCm39)	G317D	probably benign	Het
Rusf1	C	T	7: 127,889,786 (GRCm39)	R1H	probably damaging	Het
Slc14a1	A	T	18: 78,145,656 (GRCm39)	I426N	possibly damaging	Het
Slc23a1	C	T	18: 35,755,588 (GRCm39)	G436E	probably damaging	Het
Slc45a3	A	G	1: 131,905,523 (GRCm39)	D182G	probably damaging	Het
Sos1	A	T	17: 80,715,728 (GRCm39)	F1010I	probably damaging	Het
Tap1	A	G	17: 34,412,163 (GRCm39)	E456G	probably damaging	Het
Tha1	A	T	11: 117,759,493 (GRCm39)	V332E	probably damaging	Het
Tmem18	T	A	12: 30,638,517 (GRCm39)	I93N	probably damaging	Het
Tnrc18	A	G	5: 142,711,767 (GRCm39)	F2664S	probably damaging	Het
Tpm3	T	A	3: 89,981,011 (GRCm39)		probably benign	Het
Ttc3	A	G	16: 94,255,351 (GRCm39)	E1615G	probably damaging	Het
Ube3b	A	G	5: 114,540,747 (GRCm39)	T485A	probably benign	Het
Vmn2r92	A	G	17: 18,386,886 (GRCm39)	Y75C	probably damaging	Het
Zfp169	T	C	13: 48,644,575 (GRCm39)	D184G	unknown	Het

Other mutations in Cnot10

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01313:Cnot10	APN	9	114,460,923 (GRCm39)	missense	probably benign	0.19
IGL02004:Cnot10	APN	9	114,451,998 (GRCm39)	missense	probably damaging	1.00
IGL03297:Cnot10	APN	9	114,427,784 (GRCm39)	missense	possibly damaging	0.87
BB003:Cnot10	UTSW	9	114,446,883 (GRCm39)	missense	probably damaging	1.00
BB013:Cnot10	UTSW	9	114,446,883 (GRCm39)	missense	probably damaging	1.00
R0348:Cnot10	UTSW	9	114,427,838 (GRCm39)	missense	probably benign	0.10
R0390:Cnot10	UTSW	9	114,458,218 (GRCm39)	nonsense	probably null
R1256:Cnot10	UTSW	9	114,439,749 (GRCm39)	missense	probably damaging	1.00
R1471:Cnot10	UTSW	9	114,420,619 (GRCm39)	missense	probably benign	0.00
R1607:Cnot10	UTSW	9	114,458,163 (GRCm39)	nonsense	probably null
R1721:Cnot10	UTSW	9	114,444,067 (GRCm39)	missense	probably benign
R1741:Cnot10	UTSW	9	114,426,892 (GRCm39)	missense	possibly damaging	0.87
R2116:Cnot10	UTSW	9	114,455,504 (GRCm39)	missense	probably damaging	1.00
R4073:Cnot10	UTSW	9	114,452,015 (GRCm39)	missense	possibly damaging	0.91
R4074:Cnot10	UTSW	9	114,452,015 (GRCm39)	missense	possibly damaging	0.91
R4075:Cnot10	UTSW	9	114,452,015 (GRCm39)	missense	possibly damaging	0.91
R4365:Cnot10	UTSW	9	114,460,949 (GRCm39)	nonsense	probably null
R4383:Cnot10	UTSW	9	114,460,949 (GRCm39)	nonsense	probably null
R4385:Cnot10	UTSW	9	114,460,949 (GRCm39)	nonsense	probably null
R4398:Cnot10	UTSW	9	114,460,949 (GRCm39)	nonsense	probably null
R4423:Cnot10	UTSW	9	114,446,988 (GRCm39)	missense	probably damaging	1.00
R4859:Cnot10	UTSW	9	114,456,532 (GRCm39)	missense	probably damaging	1.00
R4916:Cnot10	UTSW	9	114,458,202 (GRCm39)	missense	possibly damaging	0.72
R4927:Cnot10	UTSW	9	114,447,012 (GRCm39)	missense	probably damaging	1.00
R5153:Cnot10	UTSW	9	114,442,803 (GRCm39)	missense	probably damaging	1.00
R5677:Cnot10	UTSW	9	114,458,161 (GRCm39)	missense	probably damaging	1.00
R5702:Cnot10	UTSW	9	114,458,078 (GRCm39)	missense	probably damaging	0.98
R5790:Cnot10	UTSW	9	114,454,985 (GRCm39)	splice site	probably null
R6190:Cnot10	UTSW	9	114,461,791 (GRCm39)	missense	probably damaging	1.00
R6353:Cnot10	UTSW	9	114,426,614 (GRCm39)	missense	probably damaging	1.00
R6463:Cnot10	UTSW	9	114,454,970 (GRCm39)	missense	probably damaging	1.00
R6819:Cnot10	UTSW	9	114,444,123 (GRCm39)	missense	probably benign	0.10
R6849:Cnot10	UTSW	9	114,461,004 (GRCm39)	missense	probably benign	0.01
R6875:Cnot10	UTSW	9	114,444,175 (GRCm39)	missense	probably benign	0.00
R7071:Cnot10	UTSW	9	114,446,787 (GRCm39)	splice site	probably null
R7408:Cnot10	UTSW	9	114,460,894 (GRCm39)	missense	probably benign	0.33
R7412:Cnot10	UTSW	9	114,454,971 (GRCm39)	missense	probably damaging	1.00
R7645:Cnot10	UTSW	9	114,442,705 (GRCm39)	missense	probably benign
R7706:Cnot10	UTSW	9	114,422,506 (GRCm39)	missense	probably damaging	0.98
R7926:Cnot10	UTSW	9	114,446,883 (GRCm39)	missense	probably damaging	1.00
R8187:Cnot10	UTSW	9	114,426,556 (GRCm39)	nonsense	probably null
R8412:Cnot10	UTSW	9	114,439,738 (GRCm39)	missense	probably benign	0.11
R8904:Cnot10	UTSW	9	114,430,423 (GRCm39)	missense	probably benign	0.06
R9340:Cnot10	UTSW	9	114,460,897 (GRCm39)	missense	probably benign	0.01
R9691:Cnot10	UTSW	9	114,420,715 (GRCm39)	missense	probably damaging	1.00
X0062:Cnot10	UTSW	9	114,444,202 (GRCm39)	splice site	probably null

Predicted Primers

PCR Primer
(F):5'- ACACAGTTTACAAGGGTAAGTCAG -3'
(R):5'- TCAGTCATGGCTTTAGTGGC -3'

Sequencing Primer
(F):5'- GTCAGATATTACTTTCTGTGAATGCC -3'
(R):5'- CATCCTTTGCTTGGGGGAAGAC -3'

Posted On

2020-07-28