Mutagenetix > Incidental Mutation

Incidental Mutation 'R8973:Syne3'

683264

Institutional Source

Beutler Lab

Gene Symbol

Syne3

Ensembl Gene

ENSMUSG00000054150

Gene Name

spectrin repeat containing, nuclear envelope family member 3

Synonyms

4831426I19Rik, nesprin-3, nesprin-3alpha, nesprin-3beta

MMRRC Submission

068807-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R8973 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

104929933-105009809 bp(-) (GRCm38)

Type of Mutation

critical splice donor site (2 bp from exon)

DNA Base Change (assembly)

A to G at 104959395 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000093090 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000067005] [ENSMUST00000095439] [ENSMUST00000095439] [ENSMUST00000109927]

AlphaFold

Q4FZC9

Predicted Effect

probably benign
Transcript: ENSMUST00000067005

SMART Domains

Protein: ENSMUSP00000065771
Gene: ENSMUSG00000054150

Domain	Start	End	E-Value	Type
Blast:SPEC	29	127	8e-24	BLAST
SPEC	136	237	1.01e-1	SMART
Blast:SPEC	252	446	9e-55	BLAST
low complexity region	447	459	N/A	INTRINSIC
low complexity region	495	514	N/A	INTRINSIC
SPEC	563	664	1.74e-1	SMART
Blast:SPEC	722	818	1e-12	BLAST
KASH	832	888	7.52e-24	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000095439

SMART Domains

Protein: ENSMUSP00000093090
Gene: ENSMUSG00000054150

Domain	Start	End	E-Value	Type
SPEC	7	109	1.22e-1	SMART
SPEC	223	324	1.01e-1	SMART
Blast:SPEC	339	533	2e-54	BLAST
low complexity region	534	546	N/A	INTRINSIC
low complexity region	582	601	N/A	INTRINSIC
SPEC	650	751	1.74e-1	SMART
Blast:SPEC	809	905	1e-12	BLAST
KASH	919	975	7.52e-24	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000095439

SMART Domains

Protein: ENSMUSP00000093090
Gene: ENSMUSG00000054150

Domain	Start	End	E-Value	Type
SPEC	7	109	1.22e-1	SMART
SPEC	223	324	1.01e-1	SMART
Blast:SPEC	339	533	2e-54	BLAST
low complexity region	534	546	N/A	INTRINSIC
low complexity region	582	601	N/A	INTRINSIC
SPEC	650	751	1.74e-1	SMART
Blast:SPEC	809	905	1e-12	BLAST
KASH	919	975	7.52e-24	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000109927

SMART Domains

Protein: ENSMUSP00000105553
Gene: ENSMUSG00000054150

Domain	Start	End	E-Value	Type
Blast:SPEC	29	127	8e-24	BLAST
SPEC	136	237	1.01e-1	SMART
Blast:SPEC	252	446	9e-55	BLAST
low complexity region	447	459	N/A	INTRINSIC
low complexity region	495	514	N/A	INTRINSIC
SPEC	563	664	1.74e-1	SMART
Blast:SPEC	722	818	1e-12	BLAST
KASH	832	888	7.52e-24	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.5%

Validation Efficiency

100% (77/77)

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700011I03Rik	T	G	18: 57,592,067	L123V	possibly damaging	Het
1810022K09Rik	C	T	3: 14,607,245	V97I	probably benign	Het
2410089E03Rik	T	C	15: 8,203,793	W1201R	probably damaging	Het
4930404N11Rik	T	C	10: 81,364,015	D129G	unknown	Het
Adamts16	A	T	13: 70,738,840	I975N	probably benign	Het
Adcy8	A	G	15: 64,699,135	*1250Q	probably null	Het
Anapc1	A	T	2: 128,664,032	I628N	probably damaging	Het
Ankrd39	C	T	1: 36,539,358		probably benign	Het
Ankub1	A	T	3: 57,665,511	S263R	possibly damaging	Het
Aoah	A	G	13: 20,840,155	I94V	probably benign	Het
Aox2	A	G	1: 58,289,954	D186G	probably benign	Het
Arap2	A	T	5: 62,698,325	C589*	probably null	Het
Armt1	T	C	10: 4,439,550	L69P	probably damaging	Het
Atxn7l3	T	A	11: 102,292,772	Y185F	probably benign	Het
BC067074	A	G	13: 113,319,759	T780A		Het
Cacna2d4	A	G	6: 119,241,181	D159G	probably damaging	Het
Camta2	C	A	11: 70,670,358	R1184L	probably benign	Het
Ccr7	G	A	11: 99,145,823	T91I	probably damaging	Het
Cdh9	A	G	15: 16,831,045	T323A	possibly damaging	Het
Cep250	C	T	2: 155,970,122	A446V	unknown	Het
Clec2e	C	A	6: 129,093,411	G216*	probably null	Het
Col25a1	T	C	3: 130,475,626	S176P	unknown	Het
Col4a3	A	C	1: 82,715,331	I1446L	probably benign	Het
Cse1l	A	G	2: 166,943,080	E823G	probably damaging	Het
Dchs2	A	G	3: 83,354,456	E2677G	possibly damaging	Het
Dis3l	T	C	9: 64,339,542	E77G	probably damaging	Het
Dnah6	T	C	6: 73,144,751	D1416G	probably benign	Het
Dpyd	T	C	3: 119,314,933		probably null	Het
Dst	A	G	1: 34,228,855	D3112G	probably damaging	Het
Dusp13	A	C	14: 21,734,906	N128K	probably benign	Het
Emilin2	T	G	17: 71,275,084	K216Q	probably benign	Het
Enam	T	C	5: 88,494,088	W254R	possibly damaging	Het
Esrrg	A	C	1: 188,198,750	N346T	possibly damaging	Het
Fbn2	C	T	18: 58,153,856	G244R	probably damaging	Het
Fbxw25	A	G	9: 109,650,064	L373P		Het
Gm21060	C	A	19: 61,296,928	V48L	possibly damaging	Het
Gm30302	A	T	13: 49,788,239	D80E	probably benign	Het
Gtpbp3	T	C	8: 71,491,162	V254A	possibly damaging	Het
H2-DMb2	A	G	17: 34,148,725	D171G	probably damaging	Het
Hrg	A	T	16: 22,959,218	T242S	probably benign	Het
Inf2	G	T	12: 112,607,515	C751F	unknown	Het
Krt13	A	T	11: 100,119,438	M239K	possibly damaging	Het
Lrrc72	A	G	12: 36,253,294	S7P	probably benign	Het
Matn2	A	G	15: 34,433,050	I867V	probably benign	Het
Mdh2	C	T	5: 135,790,165	A325V	possibly damaging	Het
Mki67	C	A	7: 135,695,635	A2557S	possibly damaging	Het
Mrpl16	A	T	19: 11,772,943	R64*	probably null	Het
Nav1	T	C	1: 135,584,725	D199G	probably benign	Het
Nbn	T	C	4: 15,986,585	V662A	probably damaging	Het
Nek10	G	A	14: 14,931,321		probably null	Het
Olfr141	C	A	2: 86,806,856	V48F	probably benign	Het
Olfr298	A	G	7: 86,489,279	S91P	probably damaging	Het
Olfr834	C	A	9: 18,988,678	S230*	probably null	Het
Olfr884	T	A	9: 38,047,543	V107D	possibly damaging	Het
Pcsk7	T	G	9: 45,927,642	S617R	probably benign	Het
Pde10a	C	A	17: 8,924,239	Q6K	probably benign	Het
Pigq	A	C	17: 25,932,167	M396R	probably damaging	Het
Pkhd1l1	T	A	15: 44,586,437	D3865E	probably damaging	Het
Prag1	C	T	8: 36,099,590		probably benign	Het
Rint1	A	G	5: 23,811,730	T498A	probably benign	Het
Rnf213	T	A	11: 119,461,930	F3921I		Het
Rpp14	A	G	14: 8,088,768	S95G	probably benign	Het
Ryk	T	G	9: 102,861,921	Y78D	possibly damaging	Het
Sez6	A	T	11: 77,974,571	Q678L	probably damaging	Het
Slc22a21	T	C	11: 53,969,576	K141E	probably damaging	Het
Slc30a5	A	T	13: 100,806,694	I609K	probably damaging	Het
Slc44a4	T	C	17: 34,921,562	F244L	probably damaging	Het
Susd5	T	C	9: 114,082,504	Y161H	possibly damaging	Het
Tbcd	G	C	11: 121,496,853		probably benign	Het
Tmc1	A	T	19: 20,900,851	N93K	probably benign	Het
Tmem100	T	A	11: 90,035,476	M43K	probably benign	Het
Tmem131l	A	T	3: 83,928,732	V690D	probably damaging	Het
Trim8	A	G	19: 46,515,464	Q485R	possibly damaging	Het
Vmn2r63	A	T	7: 42,928,495	H206Q	probably benign	Het
Vmn2r77	T	A	7: 86,802,942	N443K	possibly damaging	Het
Zan	T	A	5: 137,389,316	I4878F	unknown	Het
Zfand4	A	G	6: 116,314,080	D344G	probably benign	Het

Other mutations in Syne3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01154:Syne3	APN	12	104958069	missense	probably benign	0.00
IGL01986:Syne3	APN	12	104968000	missense	probably damaging	1.00
IGL02303:Syne3	APN	12	104963294	missense	probably damaging	1.00
IGL02469:Syne3	APN	12	104954306	missense	probably benign	0.08
IGL03127:Syne3	APN	12	104943428	missense	probably benign	0.02
BB008:Syne3	UTSW	12	104963232	missense	probably damaging	0.97
BB018:Syne3	UTSW	12	104963232	missense	probably damaging	0.97
PIT4791001:Syne3	UTSW	12	104963179	missense	probably benign
R0436:Syne3	UTSW	12	104946924	missense	possibly damaging	0.95
R0471:Syne3	UTSW	12	104943426	missense	probably benign	0.00
R0613:Syne3	UTSW	12	104958112	missense	probably benign
R0662:Syne3	UTSW	12	104961510	missense	probably benign	0.44
R0707:Syne3	UTSW	12	104969360	missense	probably damaging	0.98
R1321:Syne3	UTSW	12	104975796	missense	probably benign	0.14
R1494:Syne3	UTSW	12	104955582	missense	possibly damaging	0.87
R2035:Syne3	UTSW	12	104958127	missense	probably benign	0.00
R2147:Syne3	UTSW	12	104953098	missense	probably damaging	1.00
R2326:Syne3	UTSW	12	104969234	missense	probably damaging	1.00
R2923:Syne3	UTSW	12	104968084	missense	probably damaging	1.00
R3710:Syne3	UTSW	12	104943438	missense	possibly damaging	0.86
R3946:Syne3	UTSW	12	104958066	missense	probably damaging	1.00
R4542:Syne3	UTSW	12	104969244	missense	probably benign	0.00
R4544:Syne3	UTSW	12	104959469	missense	probably damaging	1.00
R5110:Syne3	UTSW	12	104943370	missense	probably benign	0.10
R5256:Syne3	UTSW	12	104975880	start codon destroyed	probably null	1.00
R5490:Syne3	UTSW	12	104955672	missense	probably damaging	1.00
R5616:Syne3	UTSW	12	104955678	missense	probably damaging	1.00
R5730:Syne3	UTSW	12	104961454	missense	probably benign	0.02
R5941:Syne3	UTSW	12	104946992	missense	probably benign
R6208:Syne3	UTSW	12	104943363	missense	probably benign	0.12
R6456:Syne3	UTSW	12	104940704	missense	possibly damaging	0.87
R6566:Syne3	UTSW	12	104946707	missense	probably benign	0.00
R6957:Syne3	UTSW	12	104954302	missense	probably damaging	1.00
R7251:Syne3	UTSW	12	104961571	frame shift	probably null
R7388:Syne3	UTSW	12	104967908	missense	probably damaging	1.00
R7591:Syne3	UTSW	12	104940604	critical splice donor site	probably null
R7614:Syne3	UTSW	12	104946642	missense	not run
R7740:Syne3	UTSW	12	104954287	missense	probably benign	0.01
R7763:Syne3	UTSW	12	104997495	start gained	probably benign
R7931:Syne3	UTSW	12	104963232	missense	probably damaging	0.97
R9031:Syne3	UTSW	12	104939612	missense	probably benign	0.45
R9263:Syne3	UTSW	12	104968156	missense	probably damaging	1.00
R9579:Syne3	UTSW	12	104975848	missense	probably damaging	0.96
R9665:Syne3	UTSW	12	104957988	missense	probably benign	0.01
R9668:Syne3	UTSW	12	104932209	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ATGCTCGGCCATGCAAAGAC -3'
(R):5'- AAGGAACCCTACTAGCACCTGG -3'

Sequencing Primer
(F):5'- TGGACGAGCCTCCAAGC -3'
(R):5'- TAGCACCTGGATGTCATCTTGCAG -3'

Posted On

2021-10-11