Incidental Mutation 'R1019:Slc6a18'
| ID |
96789 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Slc6a18
|
| Ensembl Gene |
ENSMUSG00000021612 |
| Gene Name |
solute carrier family 6 (neurotransmitter transporter), member 18 |
| Synonyms |
XT2, D630001K16Rik, Xtrp2 |
| MMRRC Submission |
039123-MU
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R1019 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
13 |
| Chromosomal Location |
73809871-73826142 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to A
at 73825998 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Arginine to Serine
at position 17
(R17S)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000152146
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000022048]
[ENSMUST00000022105]
[ENSMUST00000109679]
[ENSMUST00000109680]
[ENSMUST00000220650]
[ENSMUST00000222029]
[ENSMUST00000221026]
[ENSMUST00000221987]
[ENSMUST00000223074]
[ENSMUST00000223026]
|
| AlphaFold |
O88576 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000022048
|
| SMART Domains |
Protein: ENSMUSP00000022048
Gene: ENSMUSG00000021565
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:SNF
|
32 |
608 |
2.3e-180 |
PFAM |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000022105
AA Change: R17S
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000022105
Gene: ENSMUSG00000021612
AA Change: R17S
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:SNF
|
17 |
593 |
2.1e-182 |
PFAM |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000109679
AA Change: R17S
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000105301
Gene: ENSMUSG00000021612
AA Change: R17S
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:SNF
|
17 |
511 |
6.8e-164 |
PFAM |
|
low complexity region
|
513 |
526 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000109680
AA Change: R17S
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000105302
Gene: ENSMUSG00000021612
AA Change: R17S
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:SNF
|
17 |
325 |
2.1e-126 |
PFAM |
|
Pfam:SNF
|
392 |
555 |
9.1e-31 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000120322
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000132085
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000220650
AA Change: R17S
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000222029
AA Change: R17S
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000221026
AA Change: R17S
PolyPhen 2
Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000221987
AA Change: R17S
PolyPhen 2
Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000223074
AA Change: R17S
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000223026
AA Change: R17S
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.5%
- 10x: 96.8%
- 20x: 94.0%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The SLC6 family of proteins, which includes SLC6A18, act as specific transporters for neurotransmitters, amino acids, and osmolytes like betaine, taurine, and creatine. SLC6 proteins are sodium cotransporters that derive the energy for solute transport from the electrochemical gradient for sodium ions (Hoglund et al., 2005 [PubMed 16125675]).[supplied by OMIM, Apr 2010]
PHENOTYPE: Homozygous null mice are overtly normal but have increased blood pressure associated with impaired renal accumulation of glycine. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 30 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 6430548M08Rik |
G |
C |
8: 120,872,209 (GRCm39) |
E46Q |
probably damaging |
Het |
| 9130401M01Rik |
A |
G |
15: 57,885,823 (GRCm39) |
I353T |
possibly damaging |
Het |
| A830031A19Rik |
G |
A |
11: 23,999,438 (GRCm39) |
R53C |
unknown |
Het |
| Abcc6 |
T |
C |
7: 45,663,531 (GRCm39) |
R378G |
possibly damaging |
Het |
| Adam10 |
A |
G |
9: 70,668,922 (GRCm39) |
N413D |
probably benign |
Het |
| Csmd2 |
T |
C |
4: 128,415,807 (GRCm39) |
V2712A |
probably benign |
Het |
| Dnhd1 |
T |
C |
7: 105,358,378 (GRCm39) |
F3289S |
probably damaging |
Het |
| Hectd1 |
A |
G |
12: 51,795,440 (GRCm39) |
S2330P |
probably damaging |
Het |
| Ift74 |
C |
T |
4: 94,524,072 (GRCm39) |
A196V |
probably benign |
Het |
| Kifc1 |
G |
A |
17: 34,103,685 (GRCm39) |
R195C |
probably benign |
Het |
| Lipo2 |
A |
T |
19: 33,708,257 (GRCm39) |
C252* |
probably null |
Het |
| Mrgpra1 |
C |
G |
7: 46,984,833 (GRCm39) |
C282S |
probably benign |
Het |
| Nfatc2 |
A |
T |
2: 168,346,799 (GRCm39) |
L765Q |
probably damaging |
Het |
| Or13a26 |
C |
T |
7: 140,284,407 (GRCm39) |
P81L |
probably damaging |
Het |
| Or1l8 |
A |
G |
2: 36,817,764 (GRCm39) |
F121L |
probably benign |
Het |
| Otof |
C |
A |
5: 30,528,087 (GRCm39) |
V1924L |
probably damaging |
Het |
| Pdhb |
T |
C |
14: 8,171,442 (GRCm38) |
Q62R |
probably benign |
Het |
| Plbd1 |
A |
G |
6: 136,628,903 (GRCm39) |
V55A |
probably benign |
Het |
| Poteg |
T |
A |
8: 27,937,852 (GRCm39) |
F3I |
possibly damaging |
Het |
| Rptor |
A |
G |
11: 119,734,569 (GRCm39) |
D46G |
probably damaging |
Het |
| Slc18a1 |
C |
T |
8: 69,527,685 (GRCm39) |
|
probably null |
Het |
| Slc37a1 |
A |
G |
17: 31,534,568 (GRCm39) |
N80S |
probably benign |
Het |
| Spata31d1a |
A |
G |
13: 59,850,182 (GRCm39) |
S649P |
probably benign |
Het |
| Syngr3 |
G |
T |
17: 24,906,534 (GRCm39) |
Q94K |
possibly damaging |
Het |
| Tgm2 |
C |
A |
2: 157,966,074 (GRCm39) |
E527* |
probably null |
Het |
| Tnc |
T |
A |
4: 63,880,319 (GRCm39) |
T1952S |
probably damaging |
Het |
| Ubqln3 |
C |
T |
7: 103,790,593 (GRCm39) |
R499Q |
probably benign |
Het |
| Uck1 |
A |
G |
2: 32,146,205 (GRCm39) |
V230A |
possibly damaging |
Het |
| Unc13d |
G |
A |
11: 115,958,900 (GRCm39) |
R754C |
probably benign |
Het |
| Zfp708 |
C |
T |
13: 67,222,162 (GRCm39) |
A73T |
probably benign |
Het |
|
| Other mutations in Slc6a18 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00498:Slc6a18
|
APN |
13 |
73,819,838 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
IGL01370:Slc6a18
|
APN |
13 |
73,815,150 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01959:Slc6a18
|
APN |
13 |
73,825,984 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02096:Slc6a18
|
APN |
13 |
73,820,870 (GRCm39) |
missense |
probably benign |
0.05 |
|
IGL02147:Slc6a18
|
APN |
13 |
73,816,281 (GRCm39) |
missense |
probably damaging |
0.97 |
|
IGL02167:Slc6a18
|
APN |
13 |
73,814,591 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
IGL02465:Slc6a18
|
APN |
13 |
73,825,904 (GRCm39) |
missense |
probably benign |
0.11 |
|
IGL02548:Slc6a18
|
APN |
13 |
73,818,114 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02720:Slc6a18
|
APN |
13 |
73,818,087 (GRCm39) |
missense |
probably benign |
0.16 |
|
IGL03341:Slc6a18
|
APN |
13 |
73,826,042 (GRCm39) |
missense |
probably benign |
0.07 |
|
R0011:Slc6a18
|
UTSW |
13 |
73,813,738 (GRCm39) |
missense |
possibly damaging |
0.59 |
|
R0219:Slc6a18
|
UTSW |
13 |
73,822,751 (GRCm39) |
splice site |
probably null |
|
|
R0884:Slc6a18
|
UTSW |
13 |
73,815,156 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1610:Slc6a18
|
UTSW |
13 |
73,816,344 (GRCm39) |
missense |
probably benign |
0.10 |
|
R1901:Slc6a18
|
UTSW |
13 |
73,818,162 (GRCm39) |
missense |
probably benign |
0.39 |
|
R1969:Slc6a18
|
UTSW |
13 |
73,812,308 (GRCm39) |
missense |
possibly damaging |
0.66 |
|
R2014:Slc6a18
|
UTSW |
13 |
73,823,844 (GRCm39) |
missense |
probably benign |
0.02 |
|
R2445:Slc6a18
|
UTSW |
13 |
73,814,871 (GRCm39) |
nonsense |
probably null |
|
|
R2504:Slc6a18
|
UTSW |
13 |
73,823,925 (GRCm39) |
missense |
probably benign |
0.01 |
|
R3125:Slc6a18
|
UTSW |
13 |
73,825,921 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4084:Slc6a18
|
UTSW |
13 |
73,815,148 (GRCm39) |
missense |
probably benign |
0.39 |
|
R4571:Slc6a18
|
UTSW |
13 |
73,814,489 (GRCm39) |
missense |
possibly damaging |
0.59 |
|
R4735:Slc6a18
|
UTSW |
13 |
73,814,554 (GRCm39) |
missense |
probably benign |
0.42 |
|
R5032:Slc6a18
|
UTSW |
13 |
73,814,442 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5859:Slc6a18
|
UTSW |
13 |
73,816,278 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6258:Slc6a18
|
UTSW |
13 |
73,818,164 (GRCm39) |
nonsense |
probably null |
|
|
R6350:Slc6a18
|
UTSW |
13 |
73,826,044 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
R6370:Slc6a18
|
UTSW |
13 |
73,816,278 (GRCm39) |
missense |
probably benign |
0.21 |
|
R6640:Slc6a18
|
UTSW |
13 |
73,812,401 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R6747:Slc6a18
|
UTSW |
13 |
73,826,110 (GRCm39) |
start gained |
probably benign |
|
|
R7267:Slc6a18
|
UTSW |
13 |
73,819,755 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7702:Slc6a18
|
UTSW |
13 |
73,820,915 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8039:Slc6a18
|
UTSW |
13 |
73,813,745 (GRCm39) |
missense |
probably benign |
0.39 |
|
R8423:Slc6a18
|
UTSW |
13 |
73,813,693 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8669:Slc6a18
|
UTSW |
13 |
73,812,430 (GRCm39) |
missense |
probably benign |
0.01 |
|
R8825:Slc6a18
|
UTSW |
13 |
73,813,751 (GRCm39) |
missense |
probably null |
0.01 |
|
R8993:Slc6a18
|
UTSW |
13 |
73,816,390 (GRCm39) |
missense |
probably benign |
0.01 |
|
R9023:Slc6a18
|
UTSW |
13 |
73,823,889 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9031:Slc6a18
|
UTSW |
13 |
73,819,822 (GRCm39) |
missense |
possibly damaging |
0.56 |
|
R9589:Slc6a18
|
UTSW |
13 |
73,816,323 (GRCm39) |
missense |
possibly damaging |
0.66 |
|
Z1177:Slc6a18
|
UTSW |
13 |
73,825,979 (GRCm39) |
missense |
probably benign |
0.05 |
|
| Predicted Primers |
PCR Primer
(F):5'- ACCAGGATGGGACTCAAAGACACTG -3'
(R):5'- TAAATGCCTCAAGGAGGGCCTGAC -3'
Sequencing Primer
(F):5'- AGACACTGAGCTATTCTTGGGAC -3'
(R):5'- GACTGCTTCAGCTTCCTCAGAG -3'
|
| Posted On |
2014-01-05 |
Incidental Mutation