Incidental Mutation 'R2408:Niban2'
ID |
248084 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Niban2
|
Ensembl Gene |
ENSMUSG00000026796 |
Gene Name |
niban apoptosis regulator 2 |
Synonyms |
9130404D14Rik, Fam129b |
MMRRC Submission |
040374-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.154)
|
Stock # |
R2408 (G1)
|
Quality Score |
225 |
Status
|
Validated
|
Chromosome |
2 |
Chromosomal Location |
32766146-32815265 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to G
at 32813482 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Tyrosine to Cysteine
at position 565
(Y565C)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000028135
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000028132]
[ENSMUST00000028135]
[ENSMUST00000113200]
|
AlphaFold |
Q8R1F1 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000028132
|
SMART Domains |
Protein: ENSMUSP00000028132 Gene: ENSMUSG00000026792
Domain | Start | End | E-Value | Type |
LRR
|
80 |
102 |
1.26e1 |
SMART |
LRR
|
103 |
125 |
9.3e-1 |
SMART |
LRR
|
126 |
148 |
1.91e1 |
SMART |
LRR
|
149 |
171 |
7.05e-1 |
SMART |
Blast:IlGF
|
191 |
321 |
1e-71 |
BLAST |
low complexity region
|
322 |
333 |
N/A |
INTRINSIC |
low complexity region
|
474 |
493 |
N/A |
INTRINSIC |
coiled coil region
|
500 |
547 |
N/A |
INTRINSIC |
SAM
|
566 |
632 |
2.42e-2 |
SMART |
RING
|
679 |
713 |
3.51e-2 |
SMART |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000028135
AA Change: Y565C
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000028135 Gene: ENSMUSG00000026796 AA Change: Y565C
Domain | Start | End | E-Value | Type |
PH
|
69 |
194 |
1.81e-2 |
SMART |
low complexity region
|
594 |
607 |
N/A |
INTRINSIC |
low complexity region
|
685 |
700 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000113200
|
SMART Domains |
Protein: ENSMUSP00000108825 Gene: ENSMUSG00000026792
Domain | Start | End | E-Value | Type |
LRR
|
80 |
102 |
1.26e1 |
SMART |
LRR
|
103 |
125 |
9.3e-1 |
SMART |
LRR
|
126 |
148 |
1.91e1 |
SMART |
LRR
|
149 |
171 |
7.05e-1 |
SMART |
Blast:IlGF
|
191 |
321 |
1e-71 |
BLAST |
low complexity region
|
322 |
333 |
N/A |
INTRINSIC |
low complexity region
|
474 |
493 |
N/A |
INTRINSIC |
coiled coil region
|
500 |
547 |
N/A |
INTRINSIC |
SAM
|
566 |
632 |
2.42e-2 |
SMART |
RING
|
679 |
713 |
3.51e-2 |
SMART |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000150875
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000151607
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000154514
|
Meta Mutation Damage Score |
0.3462 |
Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.4%
- 10x: 96.9%
- 20x: 93.8%
|
Validation Efficiency |
97% (33/34) |
Allele List at MGI |
|
Other mutations in this stock |
Total: 32 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Adgrg1 |
T |
G |
8: 95,730,121 (GRCm39) |
L103V |
probably null |
Het |
BC051076 |
C |
T |
5: 88,111,684 (GRCm39) |
|
noncoding transcript |
Het |
Ccdc191 |
A |
T |
16: 43,751,561 (GRCm39) |
Q239L |
probably benign |
Het |
Dennd4b |
G |
T |
3: 90,178,882 (GRCm39) |
G538* |
probably null |
Het |
Dipk1a |
T |
C |
5: 108,062,291 (GRCm39) |
D78G |
possibly damaging |
Het |
Dusp7 |
C |
T |
9: 106,246,361 (GRCm39) |
A122V |
probably benign |
Het |
Exd2 |
T |
G |
12: 80,531,015 (GRCm39) |
|
probably benign |
Het |
Gm10782 |
C |
A |
13: 56,510,944 (GRCm39) |
|
noncoding transcript |
Het |
Gm5117 |
T |
C |
8: 32,227,306 (GRCm39) |
|
noncoding transcript |
Het |
Hhipl1 |
T |
A |
12: 108,284,806 (GRCm39) |
D386E |
probably benign |
Het |
Hnf1a |
C |
T |
5: 115,098,070 (GRCm39) |
|
probably null |
Het |
Ifi204 |
A |
G |
1: 173,583,198 (GRCm39) |
F340S |
possibly damaging |
Het |
Kalrn |
C |
T |
16: 33,810,180 (GRCm39) |
D2525N |
possibly damaging |
Het |
Med26 |
T |
C |
8: 73,249,476 (GRCm39) |
D541G |
probably benign |
Het |
Mgam |
T |
A |
6: 40,663,456 (GRCm39) |
L1218Q |
probably damaging |
Het |
Msh5 |
T |
C |
17: 35,264,095 (GRCm39) |
D136G |
probably damaging |
Het |
Nbl1 |
C |
T |
4: 138,810,843 (GRCm39) |
C117Y |
probably damaging |
Het |
Noct |
T |
C |
3: 51,132,710 (GRCm39) |
|
probably null |
Het |
Nsf |
C |
T |
11: 103,821,578 (GRCm39) |
E26K |
possibly damaging |
Het |
Prmt2 |
A |
T |
10: 76,044,301 (GRCm39) |
M417K |
probably damaging |
Het |
Rptor |
A |
G |
11: 119,748,277 (GRCm39) |
E3G |
probably damaging |
Het |
Sgms1 |
G |
A |
19: 32,137,072 (GRCm39) |
R165* |
probably null |
Het |
Slc13a5 |
A |
G |
11: 72,152,902 (GRCm39) |
S60P |
probably damaging |
Het |
Sycp1 |
T |
C |
3: 102,832,575 (GRCm39) |
Y197C |
probably damaging |
Het |
Tmem222 |
T |
C |
4: 132,998,335 (GRCm39) |
H73R |
possibly damaging |
Het |
Trmt1l |
G |
A |
1: 151,315,267 (GRCm39) |
G151D |
possibly damaging |
Het |
Ttc16 |
A |
G |
2: 32,658,020 (GRCm39) |
F409L |
probably benign |
Het |
Ubap2l |
T |
C |
3: 89,916,439 (GRCm39) |
Q925R |
probably null |
Het |
Ucn3 |
T |
G |
13: 3,991,413 (GRCm39) |
I80L |
probably benign |
Het |
Vwa3a |
T |
C |
7: 120,372,517 (GRCm39) |
S302P |
probably benign |
Het |
Zfp804b |
A |
T |
5: 7,229,410 (GRCm39) |
|
probably benign |
Het |
Zmynd19 |
A |
G |
2: 24,848,937 (GRCm39) |
E144G |
possibly damaging |
Het |
|
Other mutations in Niban2 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00543:Niban2
|
APN |
2 |
32,802,483 (GRCm39) |
missense |
probably benign |
0.04 |
IGL01072:Niban2
|
APN |
2 |
32,802,427 (GRCm39) |
unclassified |
probably benign |
|
IGL01874:Niban2
|
APN |
2 |
32,795,779 (GRCm39) |
critical splice acceptor site |
probably null |
|
IGL02302:Niban2
|
APN |
2 |
32,811,135 (GRCm39) |
missense |
probably benign |
|
IGL02681:Niban2
|
APN |
2 |
32,801,402 (GRCm39) |
missense |
probably benign |
0.05 |
IGL03126:Niban2
|
APN |
2 |
32,766,398 (GRCm39) |
missense |
possibly damaging |
0.95 |
IGL03240:Niban2
|
APN |
2 |
32,812,109 (GRCm39) |
missense |
probably benign |
0.00 |
R0125:Niban2
|
UTSW |
2 |
32,813,833 (GRCm39) |
missense |
probably benign |
0.17 |
R0948:Niban2
|
UTSW |
2 |
32,812,872 (GRCm39) |
missense |
probably damaging |
1.00 |
R1195:Niban2
|
UTSW |
2 |
32,809,815 (GRCm39) |
missense |
probably benign |
|
R1195:Niban2
|
UTSW |
2 |
32,809,815 (GRCm39) |
missense |
probably benign |
|
R1195:Niban2
|
UTSW |
2 |
32,809,815 (GRCm39) |
missense |
probably benign |
|
R2130:Niban2
|
UTSW |
2 |
32,813,659 (GRCm39) |
missense |
probably benign |
0.34 |
R4881:Niban2
|
UTSW |
2 |
32,812,590 (GRCm39) |
nonsense |
probably null |
|
R5506:Niban2
|
UTSW |
2 |
32,810,994 (GRCm39) |
missense |
probably damaging |
0.96 |
R5748:Niban2
|
UTSW |
2 |
32,809,581 (GRCm39) |
missense |
probably damaging |
1.00 |
R5857:Niban2
|
UTSW |
2 |
32,799,920 (GRCm39) |
missense |
probably benign |
0.28 |
R6011:Niban2
|
UTSW |
2 |
32,812,877 (GRCm39) |
missense |
probably damaging |
0.99 |
R6088:Niban2
|
UTSW |
2 |
32,813,135 (GRCm39) |
missense |
probably damaging |
1.00 |
R6720:Niban2
|
UTSW |
2 |
32,795,838 (GRCm39) |
missense |
probably damaging |
1.00 |
R6763:Niban2
|
UTSW |
2 |
32,801,460 (GRCm39) |
critical splice donor site |
probably null |
|
R6769:Niban2
|
UTSW |
2 |
32,785,666 (GRCm39) |
|
|
|
R7296:Niban2
|
UTSW |
2 |
32,812,654 (GRCm39) |
missense |
possibly damaging |
0.74 |
R7769:Niban2
|
UTSW |
2 |
32,809,844 (GRCm39) |
missense |
possibly damaging |
0.93 |
R7888:Niban2
|
UTSW |
2 |
32,812,137 (GRCm39) |
nonsense |
probably null |
|
R8282:Niban2
|
UTSW |
2 |
32,809,029 (GRCm39) |
missense |
probably benign |
0.02 |
R8685:Niban2
|
UTSW |
2 |
32,809,101 (GRCm39) |
missense |
probably benign |
0.03 |
R8729:Niban2
|
UTSW |
2 |
32,799,946 (GRCm39) |
missense |
probably damaging |
1.00 |
R8878:Niban2
|
UTSW |
2 |
32,811,105 (GRCm39) |
missense |
probably benign |
0.00 |
R8916:Niban2
|
UTSW |
2 |
32,811,106 (GRCm39) |
missense |
possibly damaging |
0.47 |
R9676:Niban2
|
UTSW |
2 |
32,802,581 (GRCm39) |
missense |
probably benign |
0.00 |
R9772:Niban2
|
UTSW |
2 |
32,795,868 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Predicted Primers |
PCR Primer
(F):5'- CAGAGTGGGACATAGTGGTC -3'
(R):5'- TTCAACGCCAGCCTCAAAGG -3'
Sequencing Primer
(F):5'- TGGTCTGCCAGCTTGAGC -3'
(R):5'- ACGGACATCACCTGCTTG -3'
|
Posted On |
2014-11-11 |