Mutagenetix > Incidental Mutation

Incidental Mutation 'R4119:Vmn2r39'

315228

Institutional Source

Beutler Lab

Gene Symbol

Vmn2r39

Ensembl Gene

ENSMUSG00000096658

Gene Name

vomeronasal 2, receptor 39

Synonyms

EG545909

MMRRC Submission

040992-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.107) question?

Stock #

R4119 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

9013875-9030798 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 9023674 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Tyrosine at position 443 (H443Y)

Ref Sequence

ENSEMBL: ENSMUSP00000134010 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000174388]

AlphaFold

L7N2E5

Predicted Effect

probably benign
Transcript: ENSMUST00000174388
AA Change: H443Y

PolyPhen 2 Score 0.008 (Sensitivity: 0.96; Specificity: 0.76)

SMART Domains

Protein: ENSMUSP00000134010
Gene: ENSMUSG00000096658
AA Change: H443Y

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
Pfam:ANF_receptor	73	469	9.1e-32	PFAM
Pfam:NCD3G	512	565	7.9e-21	PFAM
Pfam:7tm_3	598	833	2.6e-55	PFAM

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.4%
20x: 95.7%

Validation Efficiency

98% (46/47)

Allele List at MGI

Other mutations in this stock

Total: 44 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700013D24Rik	A	G	6: 124,356,904 (GRCm38)	L39P	probably damaging	Het
Abcc1	A	G	16: 14,394,013 (GRCm38)	M138V	probably benign	Het
Abl1	T	A	2: 31,801,727 (GRCm38)	I1067N	probably damaging	Het
Adam6a	C	T	12: 113,544,574 (GRCm38)	T189I	probably benign	Het
Ankfy1	G	A	11: 72,714,484 (GRCm38)		probably null	Het
Aplnr	T	C	2: 85,136,966 (GRCm38)	Y112H	possibly damaging	Het
Arhgap17	A	G	7: 123,306,994 (GRCm38)	F313S	probably damaging	Het
Arid1b	T	C	17: 4,995,794 (GRCm38)		probably benign	Het
Bcas1	G	C	2: 170,378,815 (GRCm38)	P394A	probably benign	Het
Ccdc116	A	G	16: 17,142,187 (GRCm38)	S213P	probably damaging	Het
Cdh15	T	C	8: 122,863,423 (GRCm38)	V365A	probably damaging	Het
Cenpf	A	G	1: 189,653,045 (GRCm38)	I2346T	probably benign	Het
Chd7	A	G	4: 8,785,658 (GRCm38)		probably benign	Het
Ezh2	A	C	6: 47,544,548 (GRCm38)	N390K	probably benign	Het
Fbxo7	C	A	10: 86,021,895 (GRCm38)		probably benign	Het
Fibin	A	G	2: 110,362,690 (GRCm38)	Y36H	probably damaging	Het
Gpr37	C	T	6: 25,688,426 (GRCm38)	R224H	possibly damaging	Het
Hars2	A	T	18: 36,790,488 (GRCm38)	N363I	probably damaging	Het
Ip6k2	G	A	9: 108,805,648 (GRCm38)	R319Q	probably benign	Het
Itpr1	G	A	6: 108,394,355 (GRCm38)	D1140N	probably benign	Het
Lrig2	A	G	3: 104,467,195 (GRCm38)	V190A	probably benign	Het
Ltk	T	A	2: 119,757,948 (GRCm38)		probably benign	Het
Morc2a	C	A	11: 3,683,868 (GRCm38)	T660N	probably benign	Het
Msh3	A	G	13: 92,354,011 (GRCm38)		probably benign	Het
Myo15b	T	C	11: 115,873,492 (GRCm38)	S1311P	probably benign	Het
Nbeal1	A	T	1: 60,291,870 (GRCm38)	I2213L	probably damaging	Het
Or10ag57	T	A	2: 87,387,843 (GRCm38)	M46K	possibly damaging	Het
Or5d16	A	G	2: 87,943,443 (GRCm38)	Y62H	probably damaging	Het
P2ry12	T	C	3: 59,217,841 (GRCm38)	T138A	probably benign	Het
Pirb	T	C	7: 3,717,575 (GRCm38)	D308G	probably damaging	Het
Pkn3	A	G	2: 30,083,037 (GRCm38)		probably benign	Het
Ripor1	T	A	8: 105,618,857 (GRCm38)		probably benign	Het
Ryr2	T	C	13: 11,779,267 (GRCm38)	T942A	probably benign	Het
Spata31e5	A	T	1: 28,777,973 (GRCm38)	V326D	probably damaging	Het
Sptbn5	T	A	2: 120,064,529 (GRCm38)	D798V	possibly damaging	Het
Synpo2	T	A	3: 123,117,150 (GRCm38)	D282V	probably damaging	Het
Tnik	T	C	3: 28,666,175 (GRCm38)	F1287L	probably damaging	Het
Tshz1	T	G	18: 84,014,189 (GRCm38)	K698T	probably benign	Het
Ttc23l	A	C	15: 10,539,920 (GRCm38)	V159G	probably damaging	Het
Urb2	T	A	8: 124,047,240 (GRCm38)	D1503E	probably benign	Het
Usp29	T	A	7: 6,962,806 (GRCm38)	N549K	probably benign	Het
Zfp24	A	G	18: 24,014,569 (GRCm38)	Y229H	possibly damaging	Het
Zfp472	T	A	17: 32,978,215 (GRCm38)	Y421*	probably null	Het
Zkscan3	T	C	13: 21,393,949 (GRCm38)	E256G	possibly damaging	Het

Other mutations in Vmn2r39

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02059:Vmn2r39	APN	7	9,023,644 (GRCm38)	missense	probably benign	0.19
IGL03017:Vmn2r39	APN	7	9,014,941 (GRCm38)	missense	probably damaging	1.00
R1314:Vmn2r39	UTSW	7	9,014,982 (GRCm38)	missense	probably damaging	1.00
R1358:Vmn2r39	UTSW	7	9,023,688 (GRCm38)	missense	possibly damaging	0.63
R1480:Vmn2r39	UTSW	7	9,014,956 (GRCm38)	missense	probably damaging	1.00
R4120:Vmn2r39	UTSW	7	9,023,674 (GRCm38)	missense	probably benign	0.01
R4720:Vmn2r39	UTSW	7	9,023,470 (GRCm38)	critical splice donor site	probably null
R4990:Vmn2r39	UTSW	7	9,023,676 (GRCm38)	missense	probably benign
R5079:Vmn2r39	UTSW	7	9,023,490 (GRCm38)	missense	probably benign	0.05
R5695:Vmn2r39	UTSW	7	9,025,151 (GRCm38)	missense	possibly damaging	0.87
R6131:Vmn2r39	UTSW	7	9,014,964 (GRCm38)	missense	probably damaging	1.00
R6561:Vmn2r39	UTSW	7	9,015,093 (GRCm38)	missense	probably damaging	1.00
R7108:Vmn2r39	UTSW	7	9,023,668 (GRCm38)	missense	probably damaging	0.96
R7122:Vmn2r39	UTSW	7	9,014,762 (GRCm38)	missense	possibly damaging	0.72
R8793:Vmn2r39	UTSW	7	9,025,150 (GRCm38)	missense	probably damaging	1.00
R9324:Vmn2r39	UTSW	7	9,027,685 (GRCm38)	missense	probably damaging	0.96
Z1176:Vmn2r39	UTSW	7	9,015,033 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GCCACCTCAAGCATGTCTAC -3'
(R):5'- GAGCCTCTCTCAGTGTTAATGTGTATG -3'

Sequencing Primer
(F):5'- CCTCAAGCATGTCTACATATAAGTG -3'
(R):5'- TTGGTATTCTTCACTGAGAGAATTG -3'

Posted On

2015-05-14