Incidental Mutation 'R4260:Or4k39'
ID 322597
Institutional Source Beutler Lab
Gene Symbol Or4k39
Ensembl Gene ENSMUSG00000062280
Gene Name olfactory receptor family 4 subfamily K member 39, pseudogene 1
Synonyms GA_x6K02T2Q125-72459956-72460837, MOR248-25_p, MOR248-17P, Olfr1285
MMRRC Submission 041073-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.078) question?
Stock # R4260 (G1)
Quality Score 225
Status Validated
Chromosome 2
Chromosomal Location 111238802-111239643 bp(+) (GRCm39)
Type of Mutation exon
DNA Base Change (assembly) T to A at 111238850 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Gene Model predicted gene model for transcript(s): [ENSMUST00000184954]
AlphaFold no structure available at present
Predicted Effect noncoding transcript
Transcript: ENSMUST00000184954
AA Change: *44R
SMART Domains Protein: ENSMUSP00000144852
Gene: ENSMUSG00000096703
AA Change: *44R

DomainStartEndE-ValueType
Pfam:7tm_4 1 264 7.6e-38 PFAM
Pfam:7tm_1 5 251 7.2e-15 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000208523
Predicted Effect noncoding transcript
Transcript: ENSMUST00000220153
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.7%
  • 10x: 97.5%
  • 20x: 95.7%
Validation Efficiency 98% (50/51)
MGI Phenotype FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 42 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adnp2 G A 18: 80,180,742 (GRCm39) S52L possibly damaging Het
Best3 A T 10: 116,860,131 (GRCm39) M464L probably benign Het
Ccdc83 T G 7: 89,877,599 (GRCm39) D281A possibly damaging Het
Ccnf G A 17: 24,445,741 (GRCm39) P502S probably damaging Het
Cd109 T A 9: 78,543,745 (GRCm39) S96R possibly damaging Het
Cep290 A C 10: 100,350,354 (GRCm39) E649D probably damaging Het
Cntnap5a G T 1: 116,374,325 (GRCm39) A946S probably benign Het
Csnk2a2 A T 8: 96,184,027 (GRCm39) D177E probably benign Het
Cyld T C 8: 89,468,019 (GRCm39) S551P probably damaging Het
Degs1 A T 1: 182,106,806 (GRCm39) I151N probably benign Het
Dnah12 A G 14: 26,520,883 (GRCm39) I1901V probably benign Het
Eif2ak3 G A 6: 70,866,497 (GRCm39) R597H probably damaging Het
Epg5 A T 18: 78,002,336 (GRCm39) H585L possibly damaging Het
Epg5 G C 18: 78,058,914 (GRCm39) W1889C probably damaging Het
Fam220a G C 5: 143,548,762 (GRCm39) R58P possibly damaging Het
Gemin5 G A 11: 58,059,185 (GRCm39) A32V probably damaging Het
Gm11189 A C 11: 53,091,703 (GRCm39) noncoding transcript Het
Grb2 A G 11: 115,540,642 (GRCm39) I85T probably damaging Het
Herc1 CTGAGGACTCTTTG CTG 9: 66,355,630 (GRCm39) probably null Het
Ide A C 19: 37,306,585 (GRCm39) S63A unknown Het
Kel A T 6: 41,663,357 (GRCm39) probably benign Het
Kifap3 C A 1: 163,689,597 (GRCm39) T527K probably damaging Het
Klra10 A G 6: 130,249,644 (GRCm39) W214R probably damaging Het
Luc7l3 A T 11: 94,186,876 (GRCm39) probably benign Het
Mrpl4 A G 9: 20,918,988 (GRCm39) E211G possibly damaging Het
Or52n5 A C 7: 104,587,803 (GRCm39) E23D probably damaging Het
Pbld2 T C 10: 62,860,186 (GRCm39) probably benign Het
Plcg1 T C 2: 160,593,627 (GRCm39) probably null Het
Ppcs A G 4: 119,279,106 (GRCm39) F149L probably damaging Het
Ptpdc1 A G 13: 48,733,234 (GRCm39) M802T probably benign Het
Ptprf A G 4: 118,083,280 (GRCm39) F909S possibly damaging Het
Raph1 A T 1: 60,542,124 (GRCm39) M330K possibly damaging Het
Rprd1a G A 18: 24,621,352 (GRCm39) R276C possibly damaging Het
Scg3 A G 9: 75,558,979 (GRCm39) Y406H probably damaging Het
Setdb1 G A 3: 95,234,808 (GRCm39) S965F probably damaging Het
Sgo2b A T 8: 64,381,330 (GRCm39) F501I probably benign Het
Slc38a4 A G 15: 96,896,374 (GRCm39) Y498H probably damaging Het
Slc5a4b A G 10: 75,939,686 (GRCm39) L150P probably damaging Het
Spata17 T A 1: 186,780,677 (GRCm39) T357S possibly damaging Het
Tmt1a A G 15: 100,210,951 (GRCm39) D141G probably benign Het
Zap70 T A 1: 36,818,189 (GRCm39) probably benign Het
Zfp985 G A 4: 147,668,029 (GRCm39) C299Y probably damaging Het
Other mutations in Or4k39
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01328:Or4k39 APN 2 111,239,564 (GRCm39) missense probably damaging 1.00
IGL01819:Or4k39 APN 2 111,239,078 (GRCm39) missense probably damaging 0.99
IGL02109:Or4k39 APN 2 111,238,838 (GRCm39) exon noncoding transcript
IGL02407:Or4k39 APN 2 111,238,923 (GRCm39) exon noncoding transcript
R0054:Or4k39 UTSW 2 111,239,140 (GRCm39) missense probably benign 0.00
R1665:Or4k39 UTSW 2 111,239,098 (GRCm39) missense probably damaging 1.00
R2339:Or4k39 UTSW 2 111,239,534 (GRCm39) missense probably benign 0.36
R3876:Or4k39 UTSW 2 111,238,967 (GRCm39) missense possibly damaging 0.57
R4439:Or4k39 UTSW 2 111,239,653 (GRCm39) exon noncoding transcript
R4762:Or4k39 UTSW 2 111,239,225 (GRCm39) exon noncoding transcript
R4821:Or4k39 UTSW 2 111,239,570 (GRCm39) exon noncoding transcript
R5120:Or4k39 UTSW 2 111,239,585 (GRCm39) exon noncoding transcript
R5215:Or4k39 UTSW 2 111,239,631 (GRCm39) exon noncoding transcript
R5244:Or4k39 UTSW 2 111,238,899 (GRCm39) exon noncoding transcript
R5667:Or4k39 UTSW 2 111,238,818 (GRCm39) exon noncoding transcript
R5671:Or4k39 UTSW 2 111,238,818 (GRCm39) exon noncoding transcript
R5687:Or4k39 UTSW 2 111,239,033 (GRCm39) exon noncoding transcript
Predicted Primers PCR Primer
(F):5'- GGGATGGATAAGTTGCTAAGATTTC -3'
(R):5'- AGAGGATCTGGCTCATGCAG -3'

Sequencing Primer
(F):5'- AGCTATTGTTTCTCTTGCAGAAC -3'
(R):5'- TGCAGCCCCCAAAGGAAATTG -3'
Posted On 2015-06-20