Mutagenetix > Incidental Mutation

Incidental Mutation 'R7114:Zkscan5'

568561

Institutional Source

Beutler Lab

Gene Symbol

Zkscan5

Ensembl Gene

ENSMUSG00000055991

Gene Name

zinc finger with KRAB and SCAN domains 5

Synonyms

hKraba1, Zfp95

MMRRC Submission

045244-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.118) question?

Stock #

R7114 (G1)

Quality Score

209.009

Status

Validated

Chromosome

Chromosomal Location

145141372-145158560 bp(+) (GRCm39)

Type of Mutation

intron

DNA Base Change (assembly)

T to A at 145147988 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000124838 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000031601] [ENSMUST00000085671] [ENSMUST00000161896]

AlphaFold

Q9Z1D8

Predicted Effect

probably benign
Transcript: ENSMUST00000031601

SMART Domains

Protein: ENSMUSP00000031601
Gene: ENSMUSG00000055991

Domain	Start	End	E-Value	Type
SCAN	46	155	2.18e-69	SMART
ZnF_C2H2	268	290	3.58e-2	SMART
ZnF_C2H2	296	318	9.73e-4	SMART
ZnF_C2H2	324	346	1.45e-2	SMART
ZnF_C2H2	352	374	1.28e-3	SMART
ZnF_C2H2	467	489	1.82e-3	SMART
ZnF_C2H2	495	517	3.63e-3	SMART
ZnF_C2H2	523	545	7.78e-3	SMART
ZnF_C2H2	551	573	9.73e-4	SMART
ZnF_C2H2	579	601	1.08e-1	SMART
ZnF_C2H2	635	657	1.12e-3	SMART
ZnF_C2H2	691	713	5.14e-3	SMART
ZnF_C2H2	719	741	2.4e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000085671

SMART Domains

Protein: ENSMUSP00000082814
Gene: ENSMUSG00000055991

Domain	Start	End	E-Value	Type
SCAN	46	155	2.18e-69	SMART
KRAB	216	276	5.35e-3	SMART
ZnF_C2H2	341	363	3.58e-2	SMART
ZnF_C2H2	369	391	9.73e-4	SMART
ZnF_C2H2	397	419	1.45e-2	SMART
ZnF_C2H2	425	447	1.28e-3	SMART
ZnF_C2H2	540	562	1.82e-3	SMART
ZnF_C2H2	568	590	3.63e-3	SMART
ZnF_C2H2	596	618	7.78e-3	SMART
ZnF_C2H2	624	646	9.73e-4	SMART
ZnF_C2H2	652	674	1.08e-1	SMART
ZnF_C2H2	708	730	1.12e-3	SMART
ZnF_C2H2	764	786	5.14e-3	SMART
ZnF_C2H2	792	814	2.4e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000161881

SMART Domains

Protein: ENSMUSP00000124544
Gene: ENSMUSG00000055991

Domain	Start	End	E-Value	Type
KRAB	59	118	2.71e0	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000161896

SMART Domains

Protein: ENSMUSP00000124838
Gene: ENSMUSG00000055991

Domain	Start	End	E-Value	Type
SCAN	46	155	1.59e-62	SMART

Predicted Effect

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.2%

Validation Efficiency

98% (59/60)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a zinc finger protein of the Kruppel family. The protein contains a SCAN box and a KRAB A domain and may be involved in transcriptional regulation. A similar protein in mouse is differentially expressed in spermatogenesis. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2015]

Allele List at MGI

Other mutations in this stock

Total: 57 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aatk	C	T	11: 119,900,445 (GRCm39)	A1291T	probably benign	Het
Anks1b	G	A	10: 90,143,560 (GRCm39)	R523Q	probably damaging	Het
Arhgap12	T	A	18: 6,028,056 (GRCm39)	I690F	probably damaging	Het
Caln1	T	C	5: 130,868,124 (GRCm39)	V220A	possibly damaging	Het
Cd79b	T	A	11: 106,202,713 (GRCm39)	T263S	probably damaging	Het
Cep290	A	T	10: 100,379,220 (GRCm39)	K67N	probably damaging	Het
Col19a1	T	C	1: 24,377,017 (GRCm39)	T443A	possibly damaging	Het
Col25a1	A	G	3: 130,389,324 (GRCm39)	I636V	probably benign	Het
Col9a3	C	T	2: 180,245,590 (GRCm39)	P154S	unknown	Het
Cyp3a11	T	A	5: 145,795,593 (GRCm39)	M453L	probably benign	Het
Disp1	C	A	1: 182,869,030 (GRCm39)	R1130L	probably damaging	Het
Eno1b	T	C	18: 48,180,560 (GRCm39)	V246A	possibly damaging	Het
Eogt	T	C	6: 97,092,965 (GRCm39)	Y404C	probably damaging	Het
Ephx3	T	A	17: 32,404,006 (GRCm39)	E380V	possibly damaging	Het
Fancl	T	C	11: 26,357,615 (GRCm39)	L114P	probably damaging	Het
Flad1	C	T	3: 89,314,837 (GRCm39)	G287S	probably benign	Het
Gcm1	G	T	9: 77,967,061 (GRCm39)	K93N	probably damaging	Het
Golga3	T	A	5: 110,350,578 (GRCm39)	D704E	probably benign	Het
Grb14	A	C	2: 64,747,197 (GRCm39)	I451S	probably damaging	Het
Gtf3c3	T	C	1: 54,462,666 (GRCm39)	N366D	probably benign	Het
Hecw1	A	T	13: 14,486,356 (GRCm39)	H376Q	probably benign	Het
Helb	A	T	10: 119,941,161 (GRCm39)	V509E	probably benign	Het
Hephl1	C	T	9: 14,981,111 (GRCm39)	E774K	probably damaging	Het
Hkdc1	T	C	10: 62,229,622 (GRCm39)	E685G	probably damaging	Het
Igfn1	T	C	1: 135,894,519 (GRCm39)	T2016A	probably benign	Het
Igkv5-43	T	G	6: 69,800,515 (GRCm39)	Q57H	probably damaging	Het
Lamc3	T	A	2: 31,820,657 (GRCm39)	V1224E	probably damaging	Het
Lgals3bp	C	T	11: 118,284,309 (GRCm39)	W423*	probably null	Het
Mcm9	G	A	10: 53,414,669 (GRCm39)	T137I	possibly damaging	Het
Mdga1	C	A	17: 30,061,816 (GRCm39)		probably null	Het
Mocos	C	T	18: 24,799,572 (GRCm39)	P269S	probably damaging	Het
Naa40	A	G	19: 7,207,322 (GRCm39)	V134A	probably damaging	Het
Neb	G	A	2: 52,082,571 (GRCm39)	L5680F	probably damaging	Het
Nedd9	A	G	13: 41,492,099 (GRCm39)	V137A	probably benign	Het
Nup133	T	C	8: 124,642,112 (GRCm39)	I784V	probably benign	Het
Nup214	T	C	2: 31,915,256 (GRCm39)	S1147P	possibly damaging	Het
Or10x4	A	T	1: 174,218,805 (GRCm39)	M57L	probably damaging	Het
Or8g28	G	T	9: 39,169,897 (GRCm39)	Q24K	possibly damaging	Het
Plcb4	T	A	2: 135,824,043 (GRCm39)		probably null	Het
Pomt1	C	T	2: 32,143,848 (GRCm39)	T671I	probably benign	Het
Pomt2	G	T	12: 87,157,150 (GRCm39)	P723H	probably damaging	Het
Prpf8	T	A	11: 75,394,181 (GRCm39)	Y1741*	probably null	Het
Ptprs	C	G	17: 56,758,697 (GRCm39)	V175L	probably benign	Het
Slc36a4	T	C	9: 15,633,250 (GRCm39)	F95L	probably benign	Het
Smn1	C	T	13: 100,267,648 (GRCm39)	P225S	probably benign	Het
Snrpa	A	T	7: 26,891,174 (GRCm39)	I99N	probably benign	Het
Tgm5	G	T	2: 120,878,977 (GRCm39)	Y588*	probably null	Het
Tmeff2	T	A	1: 51,224,404 (GRCm39)		probably null	Het
Tmem120b	T	C	5: 123,254,741 (GRCm39)	F314S	probably damaging	Het
Trim43b	C	T	9: 88,967,661 (GRCm39)	R325H	probably benign	Het
Vmn1r26	C	T	6: 57,985,755 (GRCm39)	A145T	probably benign	Het
Wdfy4	T	C	14: 32,693,531 (GRCm39)		probably null	Het
Wnt5a	C	A	14: 28,244,713 (GRCm39)	T320K	probably damaging	Het
Wrn	AGCAGGTAATACATACCG	AG	8: 33,775,149 (GRCm39)		probably null	Het
Zfp398	T	C	6: 47,842,910 (GRCm39)	S321P	probably benign	Het
Zfp959	T	A	17: 56,205,501 (GRCm39)	C513S	possibly damaging	Het
Zfr2	A	G	10: 81,080,559 (GRCm39)	D411G	probably damaging	Het

Other mutations in Zkscan5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL03080:Zkscan5	APN	5	145,155,460 (GRCm39)	missense	probably damaging	0.99
R0401:Zkscan5	UTSW	5	145,149,385 (GRCm39)	missense	probably damaging	0.99
R0458:Zkscan5	UTSW	5	145,142,281 (GRCm39)	missense	probably damaging	0.97
R1456:Zkscan5	UTSW	5	145,157,798 (GRCm39)	missense	probably benign	0.03
R1801:Zkscan5	UTSW	5	145,157,015 (GRCm39)	missense	probably damaging	1.00
R2269:Zkscan5	UTSW	5	145,142,277 (GRCm39)	missense	probably damaging	1.00
R2426:Zkscan5	UTSW	5	145,157,750 (GRCm39)	missense	probably benign
R3085:Zkscan5	UTSW	5	145,157,889 (GRCm39)	missense	probably damaging	1.00
R3153:Zkscan5	UTSW	5	145,149,437 (GRCm39)	missense	probably benign
R3725:Zkscan5	UTSW	5	145,157,723 (GRCm39)	missense	probably damaging	0.98
R4479:Zkscan5	UTSW	5	145,147,984 (GRCm39)	intron	probably benign
R4647:Zkscan5	UTSW	5	145,155,640 (GRCm39)	missense	possibly damaging	0.71
R5292:Zkscan5	UTSW	5	145,155,451 (GRCm39)	missense	probably damaging	1.00
R5872:Zkscan5	UTSW	5	145,156,898 (GRCm39)	missense	probably benign
R5873:Zkscan5	UTSW	5	145,157,204 (GRCm39)	missense	possibly damaging	0.71
R5916:Zkscan5	UTSW	5	145,142,112 (GRCm39)	missense	possibly damaging	0.90
R6692:Zkscan5	UTSW	5	145,157,894 (GRCm39)	splice site	probably null
R7092:Zkscan5	UTSW	5	145,156,899 (GRCm39)	missense	probably benign
R7403:Zkscan5	UTSW	5	145,155,403 (GRCm39)	missense	probably benign	0.31
R7719:Zkscan5	UTSW	5	145,157,676 (GRCm39)	missense	probably damaging	1.00
R7741:Zkscan5	UTSW	5	145,157,847 (GRCm39)	missense	possibly damaging	0.51
R7751:Zkscan5	UTSW	5	145,157,676 (GRCm39)	missense	probably damaging	1.00
R7829:Zkscan5	UTSW	5	145,155,513 (GRCm39)	nonsense	probably null
R7874:Zkscan5	UTSW	5	145,157,676 (GRCm39)	missense	probably damaging	1.00
R7875:Zkscan5	UTSW	5	145,157,676 (GRCm39)	missense	probably damaging	1.00
R7876:Zkscan5	UTSW	5	145,157,676 (GRCm39)	missense	probably damaging	1.00
R7879:Zkscan5	UTSW	5	145,157,676 (GRCm39)	missense	probably damaging	1.00
R7884:Zkscan5	UTSW	5	145,157,676 (GRCm39)	missense	probably damaging	1.00
R7899:Zkscan5	UTSW	5	145,157,676 (GRCm39)	missense	probably damaging	1.00
R7902:Zkscan5	UTSW	5	145,157,676 (GRCm39)	missense	probably damaging	1.00
R7974:Zkscan5	UTSW	5	145,144,502 (GRCm39)	missense	unknown
R8729:Zkscan5	UTSW	5	145,157,071 (GRCm39)	missense	probably benign	0.01
R8778:Zkscan5	UTSW	5	145,155,142 (GRCm39)	missense	probably benign	0.12
R9569:Zkscan5	UTSW	5	145,144,419 (GRCm39)	missense	probably benign	0.03
R9669:Zkscan5	UTSW	5	145,142,136 (GRCm39)	missense	probably benign	0.07
R9737:Zkscan5	UTSW	5	145,142,136 (GRCm39)	missense	probably benign	0.07

Predicted Primers

PCR Primer
(F):5'- CATGTGATAAGCGTCATTCTAGTTG -3'
(R):5'- CCCCTGTCTAGAAACAAAATCTTAGTC -3'

Sequencing Primer
(F):5'- GTAGGCCTTGAACTCACTGAGATC -3'
(R):5'- CACTCAACTGTGCTTAGGGGAAAC -3'

Posted On

2019-08-23