Mutagenetix > Incidental Mutation

Incidental Mutation 'R7834:Rabgap1'

605830

Institutional Source

Beutler Lab

Gene Symbol

Rabgap1

Ensembl Gene

ENSMUSG00000035437

Gene Name

RAB GTPase activating protein 1

Synonyms

Gapcena

MMRRC Submission

045888-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.239) question?

Stock #

R7834 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

37333291-37456466 bp(+) (GRCm39)

Type of Mutation

intron

DNA Base Change (assembly)

T to C at 37359419 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000119831 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000061179] [ENSMUST00000066055] [ENSMUST00000112920] [ENSMUST00000133434] [ENSMUST00000148470]

AlphaFold

A2AWA9

Predicted Effect

probably benign
Transcript: ENSMUST00000061179

SMART Domains

Protein: ENSMUSP00000061624
Gene: ENSMUSG00000035437

Domain	Start	End	E-Value	Type
low complexity region	6	22	N/A	INTRINSIC
PTB	138	271	2.99e-30	SMART
Pfam:DUF3694	301	433	1.1e-38	PFAM
low complexity region	449	460	N/A	INTRINSIC
low complexity region	473	481	N/A	INTRINSIC
low complexity region	502	516	N/A	INTRINSIC
TBC	558	770	9.27e-74	SMART
Blast:TBC	803	880	9e-33	BLAST
coiled coil region	986	1038	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000066055

SMART Domains

Protein: ENSMUSP00000068835
Gene: ENSMUSG00000035437

Domain	Start	End	E-Value	Type
low complexity region	6	22	N/A	INTRINSIC
PTB	138	271	2.99e-30	SMART
Pfam:DUF3694	301	433	7.1e-39	PFAM
low complexity region	449	460	N/A	INTRINSIC
low complexity region	473	481	N/A	INTRINSIC
low complexity region	502	516	N/A	INTRINSIC
TBC	558	770	9.27e-74	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000112920

SMART Domains

Protein: ENSMUSP00000108542
Gene: ENSMUSG00000035437

Domain	Start	End	E-Value	Type
low complexity region	6	22	N/A	INTRINSIC
PTB	138	271	2.99e-30	SMART
Pfam:DUF3694	301	432	1.6e-35	PFAM
low complexity region	449	460	N/A	INTRINSIC
low complexity region	473	481	N/A	INTRINSIC
low complexity region	502	516	N/A	INTRINSIC
TBC	558	770	9.27e-74	SMART
Blast:TBC	803	880	9e-33	BLAST
coiled coil region	986	1038	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000133434

SMART Domains

Protein: ENSMUSP00000121963
Gene: ENSMUSG00000035437

Domain	Start	End	E-Value	Type
low complexity region	6	22	N/A	INTRINSIC
PTB	138	271	2.99e-30	SMART
Pfam:DUF3694	301	433	7.2e-39	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000148470

SMART Domains

Protein: ENSMUSP00000119831
Gene: ENSMUSG00000035437

Domain	Start	End	E-Value	Type
SCOP:d1ddma_	68	148	2e-17	SMART
Blast:PTB	70	148	1e-51	BLAST

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.1%

Validation Efficiency

100% (75/75)

Allele List at MGI

Other mutations in this stock

Total: 74 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb11	A	T	2: 69,115,068 (GRCm39)	I626N	probably damaging	Het
Abcc12	T	A	8: 87,258,179 (GRCm39)	Y779F	possibly damaging	Het
Abcc12	C	T	8: 87,284,859 (GRCm39)	C252Y	probably damaging	Het
Adam22	A	T	5: 8,180,535 (GRCm39)	C521S	probably damaging	Het
Adcy5	C	A	16: 34,977,570 (GRCm39)	H368N	probably benign	Het
Akap13	T	A	7: 75,392,390 (GRCm39)	I2411N	possibly damaging	Het
Ankrd12	A	G	17: 66,294,347 (GRCm39)	F339S	probably damaging	Het
Bmp1	T	A	14: 70,746,005 (GRCm39)	R153W	probably damaging	Het
Bmp6	T	C	13: 38,653,643 (GRCm39)	F237L	probably damaging	Het
Cacna1c	A	G	6: 118,587,542 (GRCm39)	S1628P		Het
Ccdc141	T	C	2: 76,889,889 (GRCm39)	R468G	possibly damaging	Het
Cdc40	A	T	10: 40,758,945 (GRCm39)	S43T	probably benign	Het
Celf4	A	G	18: 25,886,542 (GRCm39)	M48T	probably benign	Het
Clec4g	A	T	8: 3,766,500 (GRCm39)	M267K	probably damaging	Het
Col6a1	G	T	10: 76,545,762 (GRCm39)	S903R	unknown	Het
Creg2	A	G	1: 39,689,802 (GRCm39)	F103L	probably damaging	Het
Cul9	T	C	17: 46,836,630 (GRCm39)		probably null	Het
Dchs1	G	A	7: 105,414,774 (GRCm39)	A756V	probably benign	Het
Diaph1	G	A	18: 37,986,762 (GRCm39)		probably benign	Het
Dmxl1	G	A	18: 50,054,044 (GRCm39)	G2550D	probably damaging	Het
Dst	G	T	1: 34,233,186 (GRCm39)	R3396I	probably benign	Het
Dync2h1	T	C	9: 7,118,953 (GRCm39)	T2171A	probably benign	Het
Fgd2	C	T	17: 29,583,925 (GRCm39)	T113M	probably damaging	Het
Galnt6	G	T	15: 100,611,984 (GRCm39)	S219R	probably damaging	Het
Gbp6	T	A	5: 105,421,131 (GRCm39)	E558V	probably benign	Het
Gnas	A	T	2: 174,140,783 (GRCm39)	K377*	probably null	Het
Hars2	T	C	18: 36,922,634 (GRCm39)	I389T	probably damaging	Het
Hsp90ab1	T	C	17: 45,882,091 (GRCm39)	I123V	possibly damaging	Het
Igkv6-14	A	T	6: 70,411,992 (GRCm39)	N97K	possibly damaging	Het
Isg20	T	C	7: 78,569,867 (GRCm39)	L168P	probably damaging	Het
Kcna1	C	T	6: 126,619,703 (GRCm39)	D206N	probably benign	Het
Kcnn3	A	G	3: 89,428,661 (GRCm39)	I296V	probably damaging	Het
Kif18a	G	A	2: 109,127,119 (GRCm39)	R351H	probably damaging	Het
Klra5	A	T	6: 129,876,253 (GRCm39)		probably null	Het
Krt9	T	C	11: 100,083,492 (GRCm39)	T180A	probably benign	Het
Lhx8	T	C	3: 154,017,174 (GRCm39)	S323G	probably null	Het
Lpcat2	T	A	8: 93,644,729 (GRCm39)	L506H	possibly damaging	Het
Map2	A	G	1: 66,455,647 (GRCm39)	E1447G	probably damaging	Het
Mapk8ip2	A	T	15: 89,345,576 (GRCm39)	I779F	probably damaging	Het
Mcmdc2	G	A	1: 9,982,399 (GRCm39)		probably null	Het
Mrps15	G	A	4: 125,949,182 (GRCm39)	E217K	probably damaging	Het
Muc5b	G	A	7: 141,412,807 (GRCm39)	G1918R	unknown	Het
Mug2	T	C	6: 122,013,241 (GRCm39)	I336T	probably benign	Het
Myh10	T	C	11: 68,676,652 (GRCm39)	V878A	probably damaging	Het
Nomo1	T	C	7: 45,706,162 (GRCm39)		probably null	Het
Ogdhl	T	A	14: 32,062,666 (GRCm39)	I584N	probably benign	Het
Pdzrn3	G	A	6: 101,128,156 (GRCm39)	R837C	probably damaging	Het
Pkhd1	A	G	1: 20,382,273 (GRCm39)	M2626T	probably benign	Het
Plat	G	T	8: 23,262,248 (GRCm39)	G91W	probably damaging	Het
Pml	C	A	9: 58,141,968 (GRCm39)	R288L	probably benign	Het
Pnliprp2	T	C	19: 58,762,591 (GRCm39)	S399P	probably benign	Het
Prelp	T	C	1: 133,842,510 (GRCm39)	T212A	probably damaging	Het
Ptpn13	T	A	5: 103,610,014 (GRCm39)	S4T	probably damaging	Het
Ptprb	A	C	10: 116,175,329 (GRCm39)	E821A	probably benign	Het
Reln	C	T	5: 22,244,633 (GRCm39)	V782M	possibly damaging	Het
Rpl3l	T	C	17: 24,952,437 (GRCm39)	V52A	possibly damaging	Het
Rrp1b	T	C	17: 32,270,698 (GRCm39)	V219A	probably benign	Het
Rtn1	T	A	12: 72,350,806 (GRCm39)	I468F	probably damaging	Het
Safb	T	A	17: 56,900,881 (GRCm39)	M129K	unknown	Het
Sall1	C	A	8: 89,760,002 (GRCm39)	S34I	probably benign	Het
Slc2a8	C	T	2: 32,866,919 (GRCm39)	G227D	probably damaging	Het
Slco4a1	G	T	2: 180,107,470 (GRCm39)	V295L	probably benign	Het
Slfn5	A	T	11: 82,851,278 (GRCm39)	Q525L	possibly damaging	Het
Speg	C	T	1: 75,361,571 (GRCm39)	T195M	probably damaging	Het
Syne2	A	T	12: 76,014,021 (GRCm39)	T3071S	probably benign	Het
Syngr1	G	T	15: 79,995,818 (GRCm39)	W119L	probably damaging	Het
Tenm2	A	G	11: 35,915,681 (GRCm39)	L1951P	probably damaging	Het
Ulk4	C	T	9: 121,092,734 (GRCm39)	E168K	possibly damaging	Het
Ush2a	G	A	1: 188,465,637 (GRCm39)	W2735*	probably null	Het
Usp17lb	T	A	7: 104,490,718 (GRCm39)	T70S	probably damaging	Het
Vmn2r6	T	G	3: 64,445,443 (GRCm39)	N761H	probably damaging	Het
Vps13d	A	T	4: 144,835,143 (GRCm39)	I2741K		Het
Wdr38	A	T	2: 38,890,196 (GRCm39)	Q110L	possibly damaging	Het
Zfp872	A	G	9: 22,111,406 (GRCm39)	K295R	probably damaging	Het

Other mutations in Rabgap1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00501:Rabgap1	APN	2	37,359,558 (GRCm39)	missense	probably damaging	1.00
IGL01456:Rabgap1	APN	2	37,431,187 (GRCm39)	missense	probably damaging	0.99
IGL01599:Rabgap1	APN	2	37,446,281 (GRCm39)	missense	probably damaging	1.00
IGL01834:Rabgap1	APN	2	37,454,773 (GRCm39)	intron	probably benign
IGL01940:Rabgap1	APN	2	37,377,079 (GRCm39)	missense	probably damaging	1.00
IGL02416:Rabgap1	APN	2	37,451,962 (GRCm39)	missense	probably benign	0.00
IGL02683:Rabgap1	APN	2	37,392,951 (GRCm39)	missense	probably damaging	1.00
IGL02755:Rabgap1	APN	2	37,427,326 (GRCm39)	missense	probably damaging	0.98
IGL02999:Rabgap1	APN	2	37,373,838 (GRCm39)	missense	possibly damaging	0.56
IGL03144:Rabgap1	APN	2	37,430,544 (GRCm39)	missense	probably damaging	0.99
Dread	UTSW	2	37,427,319 (GRCm39)	nonsense	probably null
Evanescence	UTSW	2	37,422,627 (GRCm39)	missense	probably damaging	1.00
foreboding	UTSW	2	37,422,531 (GRCm39)	missense	probably damaging	1.00
Temporality	UTSW	2	37,377,152 (GRCm39)	missense	probably damaging	0.96
IGL02796:Rabgap1	UTSW	2	37,362,318 (GRCm39)	missense	probably damaging	0.99
R0117:Rabgap1	UTSW	2	37,451,897 (GRCm39)	splice site	probably null
R0455:Rabgap1	UTSW	2	37,377,132 (GRCm39)	missense	probably damaging	1.00
R0569:Rabgap1	UTSW	2	37,379,729 (GRCm39)	intron	probably benign
R0586:Rabgap1	UTSW	2	37,433,235 (GRCm39)	missense	probably benign
R0962:Rabgap1	UTSW	2	37,450,481 (GRCm39)	intron	probably benign
R1055:Rabgap1	UTSW	2	37,382,080 (GRCm39)	missense	possibly damaging	0.91
R1086:Rabgap1	UTSW	2	37,359,458 (GRCm39)	missense	probably damaging	0.99
R1251:Rabgap1	UTSW	2	37,433,246 (GRCm39)	splice site	probably null
R1598:Rabgap1	UTSW	2	37,451,911 (GRCm39)	missense	probably damaging	1.00
R1924:Rabgap1	UTSW	2	37,385,771 (GRCm39)	critical splice donor site	probably null
R1957:Rabgap1	UTSW	2	37,373,774 (GRCm39)	missense	possibly damaging	0.93
R2134:Rabgap1	UTSW	2	37,453,499 (GRCm39)	nonsense	probably null
R2154:Rabgap1	UTSW	2	37,365,453 (GRCm39)	missense	probably damaging	1.00
R4328:Rabgap1	UTSW	2	37,422,627 (GRCm39)	missense	probably damaging	1.00
R4351:Rabgap1	UTSW	2	37,373,794 (GRCm39)	missense	probably benign
R4658:Rabgap1	UTSW	2	37,377,561 (GRCm39)	nonsense	probably null
R4821:Rabgap1	UTSW	2	37,422,531 (GRCm39)	missense	probably damaging	1.00
R4897:Rabgap1	UTSW	2	37,450,583 (GRCm39)	missense	probably benign	0.01
R5014:Rabgap1	UTSW	2	37,377,152 (GRCm39)	missense	probably damaging	1.00
R5252:Rabgap1	UTSW	2	37,365,369 (GRCm39)	missense	probably benign	0.11
R5392:Rabgap1	UTSW	2	37,359,501 (GRCm39)	missense	probably damaging	1.00
R5794:Rabgap1	UTSW	2	37,392,914 (GRCm39)	missense	probably benign	0.03
R5941:Rabgap1	UTSW	2	37,451,908 (GRCm39)	missense	possibly damaging	0.62
R6002:Rabgap1	UTSW	2	37,363,614 (GRCm39)	missense	probably benign	0.05
R6209:Rabgap1	UTSW	2	37,453,610 (GRCm39)	nonsense	probably null
R6317:Rabgap1	UTSW	2	37,432,659 (GRCm39)	missense	possibly damaging	0.88
R7011:Rabgap1	UTSW	2	37,430,492 (GRCm39)	missense	probably damaging	1.00
R7014:Rabgap1	UTSW	2	37,450,575 (GRCm39)	missense	probably benign	0.08
R7514:Rabgap1	UTSW	2	37,427,354 (GRCm39)	missense	probably damaging	1.00
R7543:Rabgap1	UTSW	2	37,359,444 (GRCm39)	missense	probably damaging	0.99
R7599:Rabgap1	UTSW	2	37,392,908 (GRCm39)	frame shift	probably null
R7709:Rabgap1	UTSW	2	37,427,339 (GRCm39)	missense	possibly damaging	0.89
R7784:Rabgap1	UTSW	2	37,377,544 (GRCm39)	missense	possibly damaging	0.91
R7816:Rabgap1	UTSW	2	37,453,476 (GRCm39)	missense	probably benign	0.01
R7869:Rabgap1	UTSW	2	37,377,142 (GRCm39)	missense	probably benign	0.31
R7888:Rabgap1	UTSW	2	37,427,319 (GRCm39)	nonsense	probably null
R7949:Rabgap1	UTSW	2	37,453,491 (GRCm39)	missense	probably benign	0.44
R8084:Rabgap1	UTSW	2	37,427,317 (GRCm39)	missense	probably damaging	1.00
R8333:Rabgap1	UTSW	2	37,385,710 (GRCm39)	missense	probably benign
R8440:Rabgap1	UTSW	2	37,432,692 (GRCm39)	critical splice donor site	probably null
R9210:Rabgap1	UTSW	2	37,377,152 (GRCm39)	missense	probably damaging	0.96
R9212:Rabgap1	UTSW	2	37,377,152 (GRCm39)	missense	probably damaging	0.96
R9574:Rabgap1	UTSW	2	37,433,246 (GRCm39)	splice site	probably null
Z1176:Rabgap1	UTSW	2	37,450,556 (GRCm39)	missense	probably benign	0.06
Z1177:Rabgap1	UTSW	2	37,359,540 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- GCAGCCCTATAAGTAGGTGGTG -3'
(R):5'- GGCTGTCAAACTTTACCTTGAGTC -3'

Sequencing Primer
(F):5'- AGCCCTATAAGTAGGTGGTGTTATTG -3'
(R):5'- AAACTTTACCTTGAGTCCCGTC -3'

Posted On

2019-12-20