Mutagenetix > Incidental Mutation

Incidental Mutation 'R0302:Trim32'

65364

Institutional Source

Beutler Lab

Gene Symbol

Trim32

Ensembl Gene

ENSMUSG00000051675

Gene Name

tripartite motif-containing 32

Synonyms

3f3, Zfp117, 1810045E12Rik, BBS11

MMRRC Submission

038514-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.866) question?

Stock #

R0302 (G1)

Quality Score

Status

Validated

Chromosome

Chromosomal Location

65523223-65534475 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 65531491 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Glutamine at position 16 (R16Q)

Ref Sequence

ENSEMBL: ENSMUSP00000119579 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000050850] [ENSMUST00000068214] [ENSMUST00000084496] [ENSMUST00000107366] [ENSMUST00000155978] [ENSMUST00000156922]

AlphaFold

Q8CH72

Predicted Effect

probably damaging
Transcript: ENSMUST00000050850
AA Change: R16Q

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000062277
Gene: ENSMUSG00000051675
AA Change: R16Q

Domain	Start	End	E-Value	Type
RING	21	65	8.61e-9	SMART
BBOX	96	139	3.44e-8	SMART
low complexity region	253	268	N/A	INTRINSIC
low complexity region	307	321	N/A	INTRINSIC
Pfam:NHL	471	498	6.9e-7	PFAM
Pfam:NHL	618	645	4.1e-7	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000068214

SMART Domains

Protein: ENSMUSP00000065786
Gene: ENSMUSG00000028373

Domain	Start	End	E-Value	Type
signal peptide	1	51	N/A	INTRINSIC
low complexity region	87	127	N/A	INTRINSIC
transmembrane domain	219	241	N/A	INTRINSIC
low complexity region	303	312	N/A	INTRINSIC
low complexity region	342	361	N/A	INTRINSIC
low complexity region	393	404	N/A	INTRINSIC
low complexity region	432	437	N/A	INTRINSIC
transmembrane domain	443	465	N/A	INTRINSIC
EGF_like	526	563	2.92e1	SMART
Blast:EGF_like	667	708	2e-18	BLAST
EGF_like	715	764	4.03e1	SMART
MACPF	864	1048	2.88e-55	SMART
FN3	1079	1191	2.41e0	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000084496

SMART Domains

Protein: ENSMUSP00000081540
Gene: ENSMUSG00000028373

Domain	Start	End	E-Value	Type
signal peptide	1	51	N/A	INTRINSIC
low complexity region	87	127	N/A	INTRINSIC
transmembrane domain	219	241	N/A	INTRINSIC
low complexity region	303	312	N/A	INTRINSIC
low complexity region	341	352	N/A	INTRINSIC
low complexity region	380	385	N/A	INTRINSIC
transmembrane domain	391	413	N/A	INTRINSIC
EGF_like	474	511	2.92e1	SMART
Blast:EGF_like	615	656	2e-18	BLAST
EGF_like	663	712	4.03e1	SMART
MACPF	812	996	2.88e-55	SMART
FN3	1027	1139	2.41e0	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000107366
AA Change: R16Q

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000102989
Gene: ENSMUSG00000051675
AA Change: R16Q

Domain	Start	End	E-Value	Type
RING	21	65	8.61e-9	SMART
BBOX	96	139	3.44e-8	SMART
low complexity region	253	268	N/A	INTRINSIC
low complexity region	307	321	N/A	INTRINSIC
Pfam:NHL	373	400	3.6e-7	PFAM
Pfam:NHL	471	498	2.7e-7	PFAM
Pfam:NHL	618	645	2.5e-8	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000155978
AA Change: R16Q

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000119579
Gene: ENSMUSG00000051675
AA Change: R16Q

Domain	Start	End	E-Value	Type
RING	21	65	8.61e-9	SMART
Blast:BBOX	96	136	3e-22	BLAST

Predicted Effect

possibly damaging
Transcript: ENSMUST00000156922
AA Change: R16Q

PolyPhen 2 Score 0.517 (Sensitivity: 0.88; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000121949
Gene: ENSMUSG00000051675
AA Change: R16Q

Domain	Start	End	E-Value	Type
RING	21	65	8.61e-9	SMART
BBOX	96	139	3.44e-8	SMART

Meta Mutation Damage Score

0.1654

Coding Region Coverage

1x: 98.8%
3x: 97.8%
10x: 95.1%
20x: 89.5%

Validation Efficiency

100% (63/63)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. The protein localizes to cytoplasmic bodies. The protein has also been localized to the nucleus, where it interacts with the activation domain of the HIV-1 Tat protein. The Tat protein activates transcription of HIV-1 genes. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a gene trapped allele exhibit mild myopathy with sarcotubular myopathy, decreased fertility, and decreased axon diameter. Mice homozygous for a knock-out allele exhibit impaired adult muscle regeneration and myopathy. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adprs	T	C	4: 126,211,185 (GRCm39)	E244G	probably benign	Het
Aldh1l2	G	A	10: 83,356,229 (GRCm39)	P54S	probably damaging	Het
Ankdd1a	G	A	9: 65,416,924 (GRCm39)		probably benign	Het
Ankra2	T	A	13: 98,408,200 (GRCm39)	S216R	probably damaging	Het
Asah2	A	T	19: 32,030,356 (GRCm39)	N105K	probably benign	Het
Ass1	A	T	2: 31,404,831 (GRCm39)	N371Y	probably damaging	Het
Cacna1s	A	G	1: 136,028,342 (GRCm39)	Y893C	probably benign	Het
Capza2	G	A	6: 17,648,523 (GRCm39)	R15H	probably benign	Het
Cbfa2t2	T	C	2: 154,376,796 (GRCm39)		probably benign	Het
Ccdc96	A	T	5: 36,643,445 (GRCm39)	T484S	possibly damaging	Het
Cckar	GCTTAGCCTCTTCT	GCT	5: 53,857,641 (GRCm39)		probably null	Het
Ccl4	T	A	11: 83,554,280 (GRCm39)		probably benign	Het
Cpt1b	A	G	15: 89,302,073 (GRCm39)	Y702H	probably benign	Het
Cr1l	G	A	1: 194,800,101 (GRCm39)	T153I	probably damaging	Het
Cyth2	C	A	7: 45,460,009 (GRCm39)	E57*	probably null	Het
Daxx	T	A	17: 34,132,594 (GRCm39)	S575T	probably damaging	Het
Depdc5	T	C	5: 33,061,890 (GRCm39)		probably benign	Het
Dnah12	A	G	14: 26,521,956 (GRCm39)	D1923G	probably damaging	Het
Dnah7b	A	G	1: 46,162,937 (GRCm39)	T428A	probably benign	Het
Dnm2	G	T	9: 21,411,639 (GRCm39)	A619S	probably benign	Het
Enpp2	T	C	15: 54,723,457 (GRCm39)	T639A	probably benign	Het
Epsti1	A	T	14: 78,177,366 (GRCm39)	H182L	probably damaging	Het
Exoc3l	C	T	8: 106,020,175 (GRCm39)	R250Q	probably benign	Het
Ggn	G	T	7: 28,870,665 (GRCm39)		probably null	Het
Il1rap	A	G	16: 26,511,544 (GRCm39)	N196S	probably benign	Het
Ints6	T	C	14: 62,946,961 (GRCm39)	T335A	probably damaging	Het
Itga1	G	A	13: 115,148,854 (GRCm39)		probably benign	Het
Kifc3	G	T	8: 95,830,098 (GRCm39)	Q557K	possibly damaging	Het
Krt23	A	G	11: 99,369,027 (GRCm39)	I422T	probably benign	Het
Lcn2	A	G	2: 32,274,901 (GRCm39)		probably benign	Het
Lonp2	A	G	8: 87,364,619 (GRCm39)	T326A	possibly damaging	Het
Lrpprc	T	C	17: 85,047,506 (GRCm39)	I909V	possibly damaging	Het
Lrrc14	G	T	15: 76,598,552 (GRCm39)	R396L	probably benign	Het
Lypd6	T	G	2: 50,055,679 (GRCm39)		probably benign	Het
Man2b1	A	G	8: 85,819,645 (GRCm39)	N610S	probably damaging	Het
Map2	A	T	1: 66,453,987 (GRCm39)	N959I	probably benign	Het
Mctp2	C	T	7: 71,740,012 (GRCm39)	V793I	possibly damaging	Het
Med25	A	C	7: 44,529,982 (GRCm39)		probably benign	Het
Mfsd6	T	C	1: 52,748,616 (GRCm39)	Y83C	probably damaging	Het
Mtbp	A	T	15: 55,488,820 (GRCm39)	M499L	probably damaging	Het
Mtmr10	A	T	7: 63,947,245 (GRCm39)	K53N	probably damaging	Het
Nfat5	T	C	8: 108,085,333 (GRCm39)	I542T	probably damaging	Het
Nr1h3	A	G	2: 91,022,358 (GRCm39)	M90T	probably damaging	Het
Nsmce4a	A	G	7: 130,147,623 (GRCm39)		probably benign	Het
Oprl1	G	A	2: 181,361,021 (GRCm39)	C318Y	probably benign	Het
Or5d40	T	A	2: 88,015,854 (GRCm39)	I211N	possibly damaging	Het
Pbx3	A	T	2: 34,114,572 (GRCm39)	S46T	probably benign	Het
Pign	A	T	1: 105,516,818 (GRCm39)	F575I	possibly damaging	Het
Ptpn13	G	T	5: 103,713,091 (GRCm39)	S1738I	probably benign	Het
Rnf126	G	T	10: 79,595,057 (GRCm39)	P269Q	probably damaging	Het
Ryr3	G	A	2: 112,477,468 (GRCm39)		probably benign	Het
Slc2a7	C	T	4: 150,233,978 (GRCm39)	A31V	probably damaging	Het
Slc6a12	A	G	6: 121,340,218 (GRCm39)	D487G	probably damaging	Het
Son	G	T	16: 91,453,032 (GRCm39)	G593V	probably damaging	Het
Spata31d1a	T	C	13: 59,850,964 (GRCm39)	N388S	probably benign	Het
Spg11	A	T	2: 121,922,668 (GRCm39)	M927K	possibly damaging	Het
Taf13	A	G	3: 108,479,038 (GRCm39)	M1V	probably null	Het
Trio	A	G	15: 27,902,603 (GRCm39)	F286S	probably damaging	Het
Trpm2	A	C	10: 77,779,824 (GRCm39)		probably benign	Het
Ttc7b	T	C	12: 100,353,438 (GRCm39)	M390V	possibly damaging	Het
Vmn1r184	A	T	7: 25,966,968 (GRCm39)	Q238L	probably damaging	Het
Zfp236	T	C	18: 82,676,213 (GRCm39)	E368G	probably damaging	Het
Zfr2	G	T	10: 81,087,170 (GRCm39)		probably benign	Het

Other mutations in Trim32

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02142:Trim32	APN	4	65,532,736 (GRCm39)	missense	probably damaging	1.00
IGL02534:Trim32	APN	4	65,532,906 (GRCm39)	missense	possibly damaging	0.72
R0356:Trim32	UTSW	4	65,531,491 (GRCm39)	missense	probably damaging	1.00
R0358:Trim32	UTSW	4	65,531,491 (GRCm39)	missense	probably damaging	1.00
R0497:Trim32	UTSW	4	65,531,491 (GRCm39)	missense	probably damaging	1.00
R0544:Trim32	UTSW	4	65,531,491 (GRCm39)	missense	probably damaging	1.00
R0547:Trim32	UTSW	4	65,531,491 (GRCm39)	missense	probably damaging	1.00
R0611:Trim32	UTSW	4	65,531,893 (GRCm39)	missense	possibly damaging	0.71
R1183:Trim32	UTSW	4	65,532,628 (GRCm39)	missense	probably benign	0.00
R1523:Trim32	UTSW	4	65,532,241 (GRCm39)	missense	probably benign	0.04
R1784:Trim32	UTSW	4	65,532,634 (GRCm39)	missense	probably damaging	0.96
R1939:Trim32	UTSW	4	65,532,303 (GRCm39)	missense	probably benign
R2069:Trim32	UTSW	4	65,533,013 (GRCm39)	nonsense	probably null
R2869:Trim32	UTSW	4	65,532,694 (GRCm39)	missense	probably damaging	1.00
R2869:Trim32	UTSW	4	65,532,694 (GRCm39)	missense	probably damaging	1.00
R3875:Trim32	UTSW	4	65,531,703 (GRCm39)	missense	possibly damaging	0.93
R5464:Trim32	UTSW	4	65,532,625 (GRCm39)	missense	probably damaging	1.00
R6246:Trim32	UTSW	4	65,532,801 (GRCm39)	missense	probably damaging	1.00
R6610:Trim32	UTSW	4	65,533,308 (GRCm39)	missense	probably damaging	1.00
R8125:Trim32	UTSW	4	65,532,199 (GRCm39)	missense	probably benign	0.05
R8128:Trim32	UTSW	4	65,531,682 (GRCm39)	missense	probably damaging	1.00
R8430:Trim32	UTSW	4	65,532,943 (GRCm39)	missense	probably damaging	1.00
R8979:Trim32	UTSW	4	65,531,692 (GRCm39)	missense	possibly damaging	0.85
Z1177:Trim32	UTSW	4	65,533,062 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- TAGCCTTACCCAGTTGTCAGGCTC -3'
(R):5'- ATCTTCAGCACCGTCAGGTTGTCG -3'

Sequencing Primer
(F):5'- gtgtgtatgtAAGGGGAGGG -3'
(R):5'- CCGTCAGGTTGTCGGTCAG -3'

Posted On

2013-08-08