Mutagenetix > Incidental Mutation

Incidental Mutation 'R2145:Prkd1'

233762

Institutional Source

Beutler Lab

Gene Symbol

Prkd1

Ensembl Gene

ENSMUSG00000002688

Gene Name

protein kinase D1

Synonyms

PKD1, Prkcm, Pkcm

MMRRC Submission

040148-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R2145 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

50388014-50695881 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 50536694 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 130 (V130A)

Ref Sequence

ENSEMBL: ENSMUSP00000002765 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000002765]

AlphaFold

Q62101

Predicted Effect

possibly damaging
Transcript: ENSMUST00000002765
AA Change: V130A

PolyPhen 2 Score 0.766 (Sensitivity: 0.85; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000002765
Gene: ENSMUSG00000002688
AA Change: V130A

Domain	Start	End	E-Value	Type
low complexity region	2	46	N/A	INTRINSIC
C1	138	194	1.36e-12	SMART
C1	277	326	5.95e-18	SMART
PH	429	549	5.33e-9	SMART
S_TKc	589	845	1.24e-92	SMART

Meta Mutation Damage Score

0.2732

Coding Region Coverage

1x: 99.2%
3x: 98.7%
10x: 97.5%
20x: 95.6%

Validation Efficiency

97% (101/104)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a serine/threonine protein kinase involved in many cellular processes, including Golgi body membrane integrity and transport, cell migration and differentiation, MAPK8/JNK1 and Ras pathway signaling, MAPK1/3 (ERK1/2) pathway signaling, cell survival, and regulation of cell shape and adhesion. [provided by RefSeq, Jan 2017]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit partial embryonic lethality. Mice homozygous for a knock-in allele display partial embryonic and perinatal lethality. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 104 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca15	A	G	7: 119,953,701 (GRCm39)	N535S	probably benign	Het
Abcc6	A	T	7: 45,648,165 (GRCm39)	L717Q	probably benign	Het
Abraxas2	C	A	7: 132,484,790 (GRCm39)	Q278K	probably benign	Het
Acap2	A	T	16: 30,924,342 (GRCm39)	D637E	probably benign	Het
AI661453	A	G	17: 47,777,023 (GRCm39)		probably benign	Het
Aoah	A	T	13: 21,024,266 (GRCm39)	E74V	probably damaging	Het
Aoc1l1	A	T	6: 48,953,629 (GRCm39)	D518V	probably damaging	Het
Appl1	A	G	14: 26,671,576 (GRCm39)	L292S	possibly damaging	Het
Astl	T	A	2: 127,189,109 (GRCm39)	V166E	probably damaging	Het
Bbs1	T	G	19: 4,953,735 (GRCm39)	K143Q	possibly damaging	Het
Bbx	T	C	16: 50,094,907 (GRCm39)		probably benign	Het
Birc6	A	T	17: 74,967,408 (GRCm39)	Q4103L	possibly damaging	Het
C1qtnf2	T	G	11: 43,381,811 (GRCm39)	F178V	probably damaging	Het
Camta2	A	G	11: 70,562,401 (GRCm39)	F999L	probably benign	Het
Cfap68	T	C	9: 50,676,174 (GRCm39)	Y32C	probably damaging	Het
Clcn7	A	G	17: 25,363,425 (GRCm39)	I34V	probably benign	Het
Cntn5	G	T	9: 9,748,420 (GRCm39)	P487Q	probably damaging	Het
Ctu2	T	A	8: 123,205,891 (GRCm39)	I213K	probably benign	Het
Des	C	A	1: 75,340,108 (GRCm39)		probably benign	Het
Dgcr8	A	T	16: 18,098,094 (GRCm39)	D432E	probably benign	Het
Dlgap5	G	A	14: 47,633,380 (GRCm39)	R549*	probably null	Het
Dmac2l	A	G	12: 69,787,828 (GRCm39)	Q88R	probably damaging	Het
Dmxl2	T	C	9: 54,323,194 (GRCm39)	T1397A	probably damaging	Het
Dnmt1	T	A	9: 20,848,451 (GRCm39)		probably benign	Het
Dstyk	T	A	1: 132,391,113 (GRCm39)	M838K	probably damaging	Het
Dtwd1	C	A	2: 126,001,904 (GRCm39)	T208N	probably damaging	Het
Dvl1	G	A	4: 155,932,273 (GRCm39)	V28I	possibly damaging	Het
Dync1i2	T	A	2: 71,044,907 (GRCm39)		probably benign	Het
Fer1l6	T	A	15: 58,499,383 (GRCm39)	M1251K	probably benign	Het
Fmod	T	C	1: 133,968,256 (GRCm39)	Y99H	probably benign	Het
Fn1	A	T	1: 71,645,163 (GRCm39)	V1552D	probably damaging	Het
Fnip2	A	T	3: 79,407,739 (GRCm39)	S281T	probably damaging	Het
Glb1	A	G	9: 114,293,233 (GRCm39)	H536R	probably benign	Het
Glis2	T	A	16: 4,431,506 (GRCm39)	S344R	possibly damaging	Het
Gm4847	A	T	1: 166,462,472 (GRCm39)	S339R	probably benign	Het
Gpr155	A	G	2: 73,187,002 (GRCm39)	S44P	probably benign	Het
Gprin1	G	A	13: 54,886,445 (GRCm39)	P610S	probably damaging	Het
Gvin3	T	A	7: 106,202,215 (GRCm39)	H343L	possibly damaging	Het
H2-Ob	A	T	17: 34,461,554 (GRCm39)	M98L	probably benign	Het
H3c6	T	C	13: 23,746,530 (GRCm39)	T4A	probably benign	Het
Hmcn2	T	C	2: 31,223,943 (GRCm39)		probably benign	Het
Ikbke	C	A	1: 131,201,211 (GRCm39)	V176L	probably damaging	Het
Il13	T	C	11: 53,523,351 (GRCm39)	T85A	possibly damaging	Het
Inpp5k	A	T	11: 75,538,017 (GRCm39)		probably null	Het
Irgm2	T	C	11: 58,111,355 (GRCm39)	S361P	possibly damaging	Het
Itga11	C	T	9: 62,639,486 (GRCm39)		probably benign	Het
Kalrn	G	T	16: 33,829,632 (GRCm39)		probably benign	Het
Kcng1	C	A	2: 168,110,952 (GRCm39)	G71C	probably damaging	Het
Kcnq5	T	A	1: 21,575,573 (GRCm39)	D291V	probably damaging	Het
Klhl7	A	T	5: 24,305,861 (GRCm39)	M37L	probably benign	Het
Letm1	A	AG	5: 33,926,859 (GRCm39)		probably null	Het
Lhx6	C	T	2: 35,977,478 (GRCm39)	V325I	probably benign	Het
Lipc	A	G	9: 70,841,817 (GRCm39)	I9T	possibly damaging	Het
Lsmem1	GTACATACATACATACATACATACATACA	GTACATACATACATACATACATACATACATACA	12: 40,235,260 (GRCm39)		probably null	Het
Mast1	C	A	8: 85,648,107 (GRCm39)	G458V	probably damaging	Het
Mga	T	C	2: 119,794,638 (GRCm39)	V2565A	possibly damaging	Het
Mpzl2	C	G	9: 44,955,471 (GRCm39)	D127E	probably benign	Het
Mrtfb	T	C	16: 13,230,450 (GRCm39)	I1045T	probably damaging	Het
Myh3	T	A	11: 66,981,882 (GRCm39)	C793S	probably benign	Het
Nomo1	T	C	7: 45,715,928 (GRCm39)	L765P	probably damaging	Het
Nup210	A	G	6: 91,005,858 (GRCm39)	I1335T	possibly damaging	Het
Or52b3	T	C	7: 102,204,267 (GRCm39)		probably null	Het
Oxr1	T	A	15: 41,683,340 (GRCm39)	S254R	probably damaging	Het
Pan3	A	G	5: 147,466,908 (GRCm39)	I592V	possibly damaging	Het
Pask	C	T	1: 93,249,019 (GRCm39)	A794T	probably benign	Het
Pex2	T	C	3: 5,626,650 (GRCm39)	E53G	probably damaging	Het
Pfkfb2	T	C	1: 130,626,460 (GRCm39)	T438A	probably benign	Het
Phactr4	T	C	4: 132,098,095 (GRCm39)	E391G	probably damaging	Het
Pira2	A	T	7: 3,847,344 (GRCm39)	L115Q	probably damaging	Het
Pkhd1l1	A	T	15: 44,376,273 (GRCm39)		probably null	Het
Pnlip	A	G	19: 58,664,876 (GRCm39)	S235G	probably benign	Het
Ptpn13	A	G	5: 103,703,999 (GRCm39)	T1344A	probably benign	Het
Ptprc	T	C	1: 138,001,419 (GRCm39)	Y780C	probably damaging	Het
Pxn	T	A	5: 115,690,815 (GRCm39)		probably benign	Het
Rap1gap2	G	A	11: 74,316,802 (GRCm39)	T245M	probably damaging	Het
Rc3h1	G	T	1: 160,757,827 (GRCm39)	K48N	probably damaging	Het
Rfwd3	T	C	8: 112,009,245 (GRCm39)	I444V	probably benign	Het
Rictor	C	T	15: 6,794,588 (GRCm39)	R293C	probably damaging	Het
Rif1	T	A	2: 52,001,412 (GRCm39)	I1622N	possibly damaging	Het
Rnf213	T	C	11: 119,306,019 (GRCm39)	V609A	probably benign	Het
Scgb1b2	G	T	7: 30,991,188 (GRCm39)		probably benign	Het
Serac1	A	T	17: 6,101,060 (GRCm39)	I448N	probably damaging	Het
Sh3kbp1	C	A	X: 158,607,492 (GRCm39)	T200K	probably benign	Het
Sned1	T	A	1: 93,199,406 (GRCm39)	F495L	probably damaging	Het
Socs7	T	C	11: 97,263,950 (GRCm39)	F281L	probably benign	Het
Spta1	C	T	1: 174,040,180 (GRCm39)	L1214F	probably benign	Het
Ssu72	A	G	4: 155,789,900 (GRCm39)	E21G	probably damaging	Het
Syngr4	A	G	7: 45,536,464 (GRCm39)	V186A	probably benign	Het
Tars3	G	A	7: 65,305,539 (GRCm39)	M254I	possibly damaging	Het
Tmem130	C	A	5: 144,680,595 (GRCm39)	V270L	probably benign	Het
Trim66	A	T	7: 109,074,320 (GRCm39)	I647N	probably damaging	Het
Tspyl2	A	T	X: 151,121,890 (GRCm39)	D572E	probably benign	Het
Unc45b	G	A	11: 82,808,580 (GRCm39)	R222H	probably benign	Het
Uxs1	T	C	1: 43,866,783 (GRCm39)	Y29C	probably damaging	Het
Virma	T	A	4: 11,548,726 (GRCm39)		probably benign	Het
Vmn1r202	C	T	13: 22,685,953 (GRCm39)	G155S	possibly damaging	Het
Vmn2r24	T	A	6: 123,755,972 (GRCm39)	F15I	probably benign	Het
Wdr64	A	G	1: 175,594,661 (GRCm39)	T471A	probably benign	Het
Zfa-ps	T	A	10: 52,419,373 (GRCm39)		noncoding transcript	Het
Zfp260	A	G	7: 29,804,765 (GRCm39)	K222E	probably damaging	Het
Zfp300	A	G	X: 20,948,190 (GRCm39)	S525P	possibly damaging	Het
Zfp821	A	G	8: 110,450,979 (GRCm39)	D324G	probably damaging	Het
Zfp934	T	C	13: 62,665,648 (GRCm39)	D331G	probably damaging	Het
Zscan29	T	C	2: 121,000,587 (GRCm39)	R7G	probably damaging	Het

Other mutations in Prkd1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00497:Prkd1	APN	12	50,430,264 (GRCm39)	missense	probably damaging	1.00
IGL00727:Prkd1	APN	12	50,411,444 (GRCm39)	missense	probably damaging	1.00
IGL00772:Prkd1	APN	12	50,430,199 (GRCm39)	missense	probably damaging	0.99
IGL01092:Prkd1	APN	12	50,430,298 (GRCm39)	splice site	probably benign
IGL01457:Prkd1	APN	12	50,439,693 (GRCm39)	nonsense	probably null
IGL01538:Prkd1	APN	12	50,388,925 (GRCm39)	missense	probably benign
IGL01762:Prkd1	APN	12	50,434,013 (GRCm39)	missense	probably benign	0.00
IGL01876:Prkd1	APN	12	50,413,131 (GRCm39)	missense	probably damaging	1.00
IGL01973:Prkd1	APN	12	50,413,162 (GRCm39)	missense	probably damaging	1.00
IGL02086:Prkd1	APN	12	50,434,046 (GRCm39)	missense	probably benign
IGL02293:Prkd1	APN	12	50,536,761 (GRCm39)	missense	probably damaging	0.97
IGL02454:Prkd1	APN	12	50,411,456 (GRCm39)	missense	probably benign	0.09
IGL03309:Prkd1	APN	12	50,435,207 (GRCm39)	missense	probably damaging	1.00
R0349:Prkd1	UTSW	12	50,413,139 (GRCm39)	missense	probably damaging	1.00
R0457:Prkd1	UTSW	12	50,413,155 (GRCm39)	missense	probably damaging	0.99
R0627:Prkd1	UTSW	12	50,536,824 (GRCm39)	missense	probably benign	0.00
R0899:Prkd1	UTSW	12	50,431,976 (GRCm39)	missense	probably damaging	0.98
R1219:Prkd1	UTSW	12	50,435,125 (GRCm39)	missense	probably damaging	1.00
R1495:Prkd1	UTSW	12	50,413,135 (GRCm39)	missense	probably damaging	1.00
R1584:Prkd1	UTSW	12	50,472,298 (GRCm39)	missense	probably damaging	1.00
R1665:Prkd1	UTSW	12	50,441,709 (GRCm39)	missense	probably damaging	1.00
R1666:Prkd1	UTSW	12	50,441,709 (GRCm39)	missense	probably damaging	1.00
R1668:Prkd1	UTSW	12	50,441,709 (GRCm39)	missense	probably damaging	1.00
R1669:Prkd1	UTSW	12	50,441,709 (GRCm39)	missense	probably damaging	1.00
R1735:Prkd1	UTSW	12	50,388,822 (GRCm39)	missense	possibly damaging	0.79
R1939:Prkd1	UTSW	12	50,441,777 (GRCm39)	missense	probably benign	0.00
R2143:Prkd1	UTSW	12	50,536,694 (GRCm39)	missense	possibly damaging	0.77
R3404:Prkd1	UTSW	12	50,695,687 (GRCm39)	missense	unknown
R3801:Prkd1	UTSW	12	50,430,205 (GRCm39)	missense	possibly damaging	0.89
R3818:Prkd1	UTSW	12	50,466,667 (GRCm39)	splice site	probably benign
R3906:Prkd1	UTSW	12	50,435,209 (GRCm39)	missense	possibly damaging	0.91
R3966:Prkd1	UTSW	12	50,439,724 (GRCm39)	missense	probably benign	0.44
R4179:Prkd1	UTSW	12	50,413,231 (GRCm39)	missense	probably damaging	1.00
R4510:Prkd1	UTSW	12	50,439,762 (GRCm39)	missense	possibly damaging	0.81
R4511:Prkd1	UTSW	12	50,439,762 (GRCm39)	missense	possibly damaging	0.81
R4663:Prkd1	UTSW	12	50,466,631 (GRCm39)	splice site	probably null
R4896:Prkd1	UTSW	12	50,436,745 (GRCm39)	missense	probably damaging	1.00
R5070:Prkd1	UTSW	12	50,441,405 (GRCm39)	nonsense	probably null
R5263:Prkd1	UTSW	12	50,435,089 (GRCm39)	missense	probably damaging	1.00
R5389:Prkd1	UTSW	12	50,389,920 (GRCm39)	missense	probably damaging	1.00
R5395:Prkd1	UTSW	12	50,438,215 (GRCm39)	missense	probably damaging	1.00
R5855:Prkd1	UTSW	12	50,439,699 (GRCm39)	missense	probably benign	0.03
R5967:Prkd1	UTSW	12	50,411,333 (GRCm39)	missense	probably damaging	0.99
R5973:Prkd1	UTSW	12	50,435,038 (GRCm39)	missense	probably damaging	0.99
R6052:Prkd1	UTSW	12	50,413,083 (GRCm39)	critical splice donor site	probably null
R6063:Prkd1	UTSW	12	50,388,826 (GRCm39)	missense	probably benign	0.02
R6309:Prkd1	UTSW	12	50,441,443 (GRCm39)	nonsense	probably null
R6518:Prkd1	UTSW	12	50,472,278 (GRCm39)	missense	probably benign	0.08
R6868:Prkd1	UTSW	12	50,472,320 (GRCm39)	missense	probably damaging	1.00
R7256:Prkd1	UTSW	12	50,435,125 (GRCm39)	missense	possibly damaging	0.88
R7346:Prkd1	UTSW	12	50,695,617 (GRCm39)	missense	possibly damaging	0.86
R7815:Prkd1	UTSW	12	50,472,300 (GRCm39)	missense	probably damaging	1.00
R8290:Prkd1	UTSW	12	50,388,799 (GRCm39)	missense	probably damaging	1.00
R8397:Prkd1	UTSW	12	50,439,675 (GRCm39)	missense	probably benign
R8671:Prkd1	UTSW	12	50,435,191 (GRCm39)	missense	probably benign	0.00
R8805:Prkd1	UTSW	12	50,435,156 (GRCm39)	missense	probably damaging	0.99
R8805:Prkd1	UTSW	12	50,435,155 (GRCm39)	missense	probably benign	0.45
R8839:Prkd1	UTSW	12	50,389,616 (GRCm39)	intron	probably benign
R9005:Prkd1	UTSW	12	50,430,185 (GRCm39)	nonsense	probably null
R9273:Prkd1	UTSW	12	50,472,232 (GRCm39)	missense	possibly damaging	0.94
R9281:Prkd1	UTSW	12	50,536,758 (GRCm39)	missense	probably benign	0.31
R9480:Prkd1	UTSW	12	50,435,283 (GRCm39)	missense	probably benign	0.19
R9497:Prkd1	UTSW	12	50,438,107 (GRCm39)	critical splice donor site	probably null
X0024:Prkd1	UTSW	12	50,536,757 (GRCm39)	missense	probably benign	0.31
X0062:Prkd1	UTSW	12	50,441,705 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ATGGACAAATTCTCCTCCGG -3'
(R):5'- GCTGAGCTGAGTACCATTCTTAATC -3'

Sequencing Primer
(F):5'- CTCAGCCTGACAGTATTGAGGTTAC -3'
(R):5'- CATCCTTCAGCTGGTGAA -3'

Posted On

2014-10-01