Incidental Mutation 'R5490:Or1j19'
ID |
432024 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Or1j19
|
Ensembl Gene |
ENSMUSG00000049315 |
Gene Name |
olfactory receptor family 1 subfamily J member 19 |
Synonyms |
GA_x6K02T2NLDC-33481050-33481991, Olfr348, MOR136-8 |
MMRRC Submission |
043051-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.054)
|
Stock # |
R5490 (G1)
|
Quality Score |
225 |
Status
|
Not validated
|
Chromosome |
2 |
Chromosomal Location |
36676539-36677480 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to A
at 36677193 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Tyrosine to Asparagine
at position 219
(Y219N)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000150343
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000056865]
[ENSMUST00000112950]
[ENSMUST00000213498]
[ENSMUST00000214909]
[ENSMUST00000215199]
[ENSMUST00000216753]
[ENSMUST00000217041]
|
AlphaFold |
Q8VGK3 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000056865
AA Change: Y219N
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000054037 Gene: ENSMUSG00000049315 AA Change: Y219N
Domain | Start | End | E-Value | Type |
Pfam:7tm_4
|
32 |
309 |
1.3e-56 |
PFAM |
Pfam:7TM_GPCR_Srsx
|
36 |
306 |
3e-6 |
PFAM |
Pfam:7tm_1
|
42 |
291 |
2.7e-24 |
PFAM |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000112950
AA Change: Y219N
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000108572 Gene: ENSMUSG00000111021 AA Change: Y219N
Domain | Start | End | E-Value | Type |
Pfam:7TM_GPCR_Srsx
|
36 |
306 |
3e-6 |
PFAM |
Pfam:7tm_1
|
42 |
291 |
3.5e-34 |
PFAM |
Pfam:7tm_4
|
140 |
284 |
3.9e-40 |
PFAM |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000213498
AA Change: Y219N
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000214909
AA Change: Y219N
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000215199
AA Change: Y219N
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000216753
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000217041
|
Coding Region Coverage |
- 1x: 98.3%
- 3x: 97.3%
- 10x: 95.2%
- 20x: 90.8%
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 47 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Aatf |
C |
T |
11: 84,401,099 (GRCm39) |
G174D |
probably damaging |
Het |
Abcc1 |
G |
T |
16: 14,228,781 (GRCm39) |
G343C |
probably damaging |
Het |
Asic2 |
T |
C |
11: 80,780,646 (GRCm39) |
N370S |
probably benign |
Het |
Btnl9 |
T |
C |
11: 49,060,395 (GRCm39) |
E451G |
probably damaging |
Het |
Cblb |
A |
G |
16: 51,994,733 (GRCm39) |
H658R |
possibly damaging |
Het |
Cdca2 |
T |
C |
14: 67,917,733 (GRCm39) |
E555G |
possibly damaging |
Het |
Chfr |
A |
G |
5: 110,300,995 (GRCm39) |
S299G |
possibly damaging |
Het |
Eea1 |
A |
G |
10: 95,861,916 (GRCm39) |
E741G |
probably benign |
Het |
Gapvd1 |
T |
C |
2: 34,583,445 (GRCm39) |
D1057G |
probably benign |
Het |
Glyat |
C |
T |
19: 12,627,645 (GRCm39) |
T80M |
probably benign |
Het |
Gpr87 |
T |
C |
3: 59,086,747 (GRCm39) |
S253G |
probably damaging |
Het |
Hapstr1 |
T |
A |
16: 8,673,721 (GRCm39) |
V216E |
probably damaging |
Het |
Hmgxb3 |
A |
G |
18: 61,296,049 (GRCm39) |
S320P |
probably damaging |
Het |
Kcnq5 |
C |
T |
1: 21,549,692 (GRCm39) |
G345D |
probably damaging |
Het |
Kif5c |
T |
C |
2: 49,648,870 (GRCm39) |
V938A |
probably benign |
Het |
Klk14 |
G |
A |
7: 43,341,501 (GRCm39) |
C51Y |
probably damaging |
Het |
Madd |
G |
T |
2: 91,000,980 (GRCm39) |
T467K |
possibly damaging |
Het |
Mamdc4 |
T |
C |
2: 25,455,890 (GRCm39) |
D706G |
probably damaging |
Het |
Map2 |
A |
G |
1: 66,452,292 (GRCm39) |
H476R |
probably damaging |
Het |
Mgat4f |
A |
G |
1: 134,317,666 (GRCm39) |
D146G |
probably damaging |
Het |
Mpeg1 |
T |
C |
19: 12,439,057 (GRCm39) |
S172P |
probably damaging |
Het |
Nkx2-3 |
A |
T |
19: 43,601,093 (GRCm39) |
T52S |
probably benign |
Het |
Nup210 |
C |
T |
6: 91,062,970 (GRCm39) |
V230I |
probably damaging |
Het |
Or51f2 |
T |
C |
7: 102,527,100 (GRCm39) |
S258P |
probably damaging |
Het |
Or5g9 |
G |
T |
2: 85,552,666 (GRCm39) |
A306S |
probably benign |
Het |
Pepd |
A |
G |
7: 34,642,115 (GRCm39) |
|
probably null |
Het |
Ppp1r36 |
T |
A |
12: 76,484,760 (GRCm39) |
W238R |
probably damaging |
Het |
Ppp1r36 |
G |
T |
12: 76,484,761 (GRCm39) |
W238L |
possibly damaging |
Het |
Prpf6 |
T |
G |
2: 181,249,958 (GRCm39) |
D39E |
probably benign |
Het |
Rassf5 |
T |
A |
1: 131,108,932 (GRCm39) |
Q163L |
possibly damaging |
Het |
Rbm43 |
T |
A |
2: 51,815,607 (GRCm39) |
T205S |
probably benign |
Het |
Relch |
T |
A |
1: 105,647,226 (GRCm39) |
V672D |
probably damaging |
Het |
Robo4 |
CGG |
CG |
9: 37,322,786 (GRCm39) |
|
probably null |
Het |
Sds |
C |
A |
5: 120,621,715 (GRCm39) |
Q286K |
possibly damaging |
Het |
Slc35a3 |
A |
T |
3: 116,474,839 (GRCm39) |
C184* |
probably null |
Het |
Smg1 |
G |
A |
7: 117,738,659 (GRCm39) |
T3530I |
possibly damaging |
Het |
Sspo |
T |
C |
6: 48,470,214 (GRCm39) |
V591A |
probably benign |
Het |
Stam2 |
T |
C |
2: 52,610,929 (GRCm39) |
D31G |
probably damaging |
Het |
Star |
A |
G |
8: 26,299,945 (GRCm39) |
K96E |
probably damaging |
Het |
Syne3 |
A |
G |
12: 104,921,931 (GRCm39) |
L495P |
probably damaging |
Het |
Tceanc2 |
A |
T |
4: 107,022,846 (GRCm39) |
M47K |
probably benign |
Het |
Tecpr2 |
T |
C |
12: 110,881,118 (GRCm39) |
L85P |
probably damaging |
Het |
Tmem241 |
C |
T |
18: 12,176,320 (GRCm39) |
R116K |
probably benign |
Het |
Yipf2 |
G |
A |
9: 21,503,487 (GRCm39) |
A20V |
probably benign |
Het |
Zc3h4 |
T |
A |
7: 16,162,930 (GRCm39) |
D443E |
unknown |
Het |
Zfp184 |
T |
A |
13: 22,142,747 (GRCm39) |
V151D |
probably benign |
Het |
Zhx1 |
T |
C |
15: 57,916,695 (GRCm39) |
Y517C |
probably damaging |
Het |
|
Other mutations in Or1j19 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01388:Or1j19
|
APN |
2 |
36,677,367 (GRCm39) |
missense |
probably benign |
0.03 |
IGL01943:Or1j19
|
APN |
2 |
36,677,095 (GRCm39) |
missense |
probably benign |
0.13 |
IGL02030:Or1j19
|
APN |
2 |
36,677,410 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02338:Or1j19
|
APN |
2 |
36,676,557 (GRCm39) |
nonsense |
probably null |
|
IGL02349:Or1j19
|
APN |
2 |
36,677,058 (GRCm39) |
missense |
possibly damaging |
0.95 |
IGL02695:Or1j19
|
APN |
2 |
36,677,332 (GRCm39) |
missense |
possibly damaging |
0.72 |
IGL03004:Or1j19
|
APN |
2 |
36,677,194 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03007:Or1j19
|
APN |
2 |
36,676,812 (GRCm39) |
missense |
probably damaging |
0.99 |
IGL03024:Or1j19
|
APN |
2 |
36,676,858 (GRCm39) |
missense |
possibly damaging |
0.55 |
R0360:Or1j19
|
UTSW |
2 |
36,677,452 (GRCm39) |
missense |
probably benign |
0.03 |
R0388:Or1j19
|
UTSW |
2 |
36,676,874 (GRCm39) |
missense |
probably benign |
0.43 |
R0614:Or1j19
|
UTSW |
2 |
36,676,705 (GRCm39) |
missense |
probably damaging |
1.00 |
R1498:Or1j19
|
UTSW |
2 |
36,677,358 (GRCm39) |
missense |
probably damaging |
1.00 |
R1562:Or1j19
|
UTSW |
2 |
36,676,696 (GRCm39) |
missense |
probably damaging |
1.00 |
R2882:Or1j19
|
UTSW |
2 |
36,677,202 (GRCm39) |
missense |
probably damaging |
1.00 |
R3731:Or1j19
|
UTSW |
2 |
36,676,578 (GRCm39) |
missense |
possibly damaging |
0.53 |
R4513:Or1j19
|
UTSW |
2 |
36,676,782 (GRCm39) |
missense |
probably benign |
0.05 |
R4899:Or1j19
|
UTSW |
2 |
36,676,810 (GRCm39) |
missense |
probably benign |
0.04 |
R5005:Or1j19
|
UTSW |
2 |
36,677,370 (GRCm39) |
missense |
probably benign |
|
R5035:Or1j19
|
UTSW |
2 |
36,676,903 (GRCm39) |
missense |
probably damaging |
1.00 |
R6361:Or1j19
|
UTSW |
2 |
36,676,792 (GRCm39) |
missense |
probably damaging |
1.00 |
R7762:Or1j19
|
UTSW |
2 |
36,677,022 (GRCm39) |
missense |
probably benign |
0.03 |
R8109:Or1j19
|
UTSW |
2 |
36,676,618 (GRCm39) |
missense |
probably benign |
0.00 |
R8223:Or1j19
|
UTSW |
2 |
36,677,409 (GRCm39) |
missense |
|
|
R8826:Or1j19
|
UTSW |
2 |
36,676,855 (GRCm39) |
nonsense |
probably null |
|
R8906:Or1j19
|
UTSW |
2 |
36,676,621 (GRCm39) |
missense |
probably benign |
0.01 |
R9138:Or1j19
|
UTSW |
2 |
36,676,702 (GRCm39) |
missense |
probably benign |
0.00 |
R9147:Or1j19
|
UTSW |
2 |
36,676,938 (GRCm39) |
missense |
probably benign |
0.01 |
R9148:Or1j19
|
UTSW |
2 |
36,676,938 (GRCm39) |
missense |
probably benign |
0.01 |
R9267:Or1j19
|
UTSW |
2 |
36,676,530 (GRCm39) |
unclassified |
probably benign |
|
R9306:Or1j19
|
UTSW |
2 |
36,677,407 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Predicted Primers |
PCR Primer
(F):5'- ATCATTTGCTGGTGCCCTTG -3'
(R):5'- GGGATTCAACATGGGTGTGAC -3'
Sequencing Primer
(F):5'- TGGTGCCCTTGTGCACAC -3'
(R):5'- GGTGTGACCATAGTGTACATCAC -3'
|
Posted On |
2016-10-05 |