Mutagenetix > Incidental Mutation

Incidental Mutation 'R7007:St6galnac1'

544783

Institutional Source

Beutler Lab

Gene Symbol

St6galnac1

Ensembl Gene

ENSMUSG00000009588

Gene Name

ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1

Synonyms

Siat7a, ST6GalNAc I

MMRRC Submission

045109-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.055) question?

Stock #

R7007 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

116655851-116666333 bp(-) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

G to A at 116657833 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Stop codon at position 356 (R356*)

Ref Sequence

ENSEMBL: ENSMUSP00000009732 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000009732]

AlphaFold

Q9QZ39

Predicted Effect

probably null
Transcript: ENSMUST00000009732
AA Change: R356*

SMART Domains

Protein: ENSMUSP00000009732
Gene: ENSMUSG00000009588
AA Change: R356*

Domain	Start	End	E-Value	Type
transmembrane domain	13	30	N/A	INTRINSIC
Pfam:Glyco_transf_29	230	518	2.9e-72	PFAM

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.0%

Validation Efficiency

95% (63/66)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Glycosylation of proteins affects cell-cell interaction, interactions with the matrix, and the functions of intracellular molecules. ST6GALNAC1 transfers a sialic acid, N-acetylneuraminic acid (NeuAc), in an alpha-2,6 linkage to O-linked GalNAc residues. The cancer-associated sialyl-Tn (sTn) antigen is formed by ST6GALNAC1-catalyzed sialylation of GalNAc residues on mucins (Ikehara et al., 1999 [PubMed 10536037]; Sewell et al., 2006 [PubMed 16319059]).[supplied by OMIM, Mar 2008]

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930474N05Rik	C	T	14: 35,817,121 (GRCm39)	T57I	probably benign	Het
Adcy8	T	C	15: 64,576,565 (GRCm39)	N999S	possibly damaging	Het
Adgrv1	T	A	13: 81,684,483 (GRCm39)	I1073F	possibly damaging	Het
Akap3	A	G	6: 126,843,439 (GRCm39)	D686G	probably damaging	Het
Alg2	A	T	4: 47,471,881 (GRCm39)	I309N	probably benign	Het
Ankrd36	A	G	11: 5,639,168 (GRCm39)	E1360G	probably benign	Het
Aox1	C	A	1: 58,370,051 (GRCm39)	Q788K	probably damaging	Het
Apoc2	A	T	7: 19,407,282 (GRCm39)	D26E	possibly damaging	Het
Bbx	G	A	16: 50,022,851 (GRCm39)	T703I	possibly damaging	Het
C2cd4d	T	C	3: 94,271,378 (GRCm39)	Y215H	probably benign	Het
C3	C	T	17: 57,525,809 (GRCm39)	E858K	probably benign	Het
Ciita	T	C	16: 10,329,171 (GRCm39)	L482P	probably damaging	Het
Cldn9	T	C	17: 23,902,052 (GRCm39)	E191G	probably benign	Het
Cnst	T	A	1: 179,438,133 (GRCm39)	S566T	probably damaging	Het
Col5a2	A	G	1: 45,417,609 (GRCm39)	I1322T	possibly damaging	Het
Cp	G	A	3: 20,024,137 (GRCm39)	V326M	probably damaging	Het
Cyp7b1	G	A	3: 18,151,782 (GRCm39)	Q144*	probably null	Het
Dnah10	T	C	5: 124,864,490 (GRCm39)	S2232P	probably damaging	Het
Dnah17	T	C	11: 118,009,697 (GRCm39)	E625G	possibly damaging	Het
Dnah7c	T	A	1: 46,571,910 (GRCm39)	D794E	probably benign	Het
Dusp10	G	A	1: 183,769,414 (GRCm39)	V127M	probably benign	Het
Dysf	G	C	6: 84,090,962 (GRCm39)	W1015C	probably damaging	Het
Fbxw17	T	C	13: 50,577,808 (GRCm39)	Y104H	probably damaging	Het
Gm6408	G	A	5: 146,420,647 (GRCm39)	E176K	probably damaging	Het
Gp1bb	T	A	16: 18,439,689 (GRCm39)	D135V	possibly damaging	Het
Gprin1	C	T	13: 54,886,069 (GRCm39)	C735Y	probably damaging	Het
Heatr9	T	A	11: 83,411,446 (GRCm39)	M30L	possibly damaging	Het
Hhat	G	A	1: 192,376,134 (GRCm39)	T333I	possibly damaging	Het
Htr5b	A	G	1: 121,438,223 (GRCm39)	F336S	probably damaging	Het
Ippk	T	G	13: 49,590,181 (GRCm39)		probably null	Het
Jph1	T	A	1: 17,074,410 (GRCm39)	H11L	possibly damaging	Het
Kif12	T	A	4: 63,084,717 (GRCm39)	I534L	probably benign	Het
Lemd3	A	T	10: 120,788,137 (GRCm39)	F523I	probably benign	Het
Lgsn	C	A	1: 31,229,508 (GRCm39)	H76Q	probably benign	Het
Lipm	T	A	19: 34,089,497 (GRCm39)	W152R	probably damaging	Het
Mei1	A	T	15: 81,978,200 (GRCm39)	R216W	probably damaging	Het
Mybpc1	C	T	10: 88,389,274 (GRCm39)	G379S	probably damaging	Het
Myh8	A	G	11: 67,179,142 (GRCm39)	T512A	probably benign	Het
Nf1	A	G	11: 79,337,849 (GRCm39)		probably null	Het
Npc1	T	C	18: 12,343,605 (GRCm39)	T463A	probably benign	Het
Or12e10	A	G	2: 87,640,230 (GRCm39)	N22S	probably damaging	Het
Or2y13	G	A	11: 49,415,011 (GRCm39)	V154M	probably benign	Het
Or6c7	A	T	10: 129,323,277 (GRCm39)	I133F	probably damaging	Het
Osbpl11	T	G	16: 33,047,309 (GRCm39)	I424R	possibly damaging	Het
Pnma8b	A	T	7: 16,680,181 (GRCm39)	K388N	possibly damaging	Het
Ppp1r26	A	T	2: 28,341,171 (GRCm39)	K267I	probably damaging	Het
Psmb5	A	T	14: 54,854,166 (GRCm39)	M104K	probably damaging	Het
Ptges2	T	C	2: 32,292,318 (GRCm39)	V378A	probably benign	Het
Rcan2	C	T	17: 44,147,216 (GRCm39)	S18F	probably benign	Het
Saxo5	A	T	8: 3,526,309 (GRCm39)	D154V	probably damaging	Het
Sf3b2	C	T	19: 5,324,545 (GRCm39)	R859Q	probably benign	Het
Slc7a1	G	A	5: 148,289,256 (GRCm39)			Het
Spata31d1a	T	A	13: 59,851,448 (GRCm39)	T227S	probably benign	Het
Sptbn2	T	A	19: 4,794,173 (GRCm39)	V1459E	possibly damaging	Het
Srgap2	T	C	1: 131,247,275 (GRCm39)	I586V	probably benign	Het
Taf5	T	A	19: 47,059,650 (GRCm39)	F265I	probably damaging	Het
Tkfc	T	A	19: 10,573,727 (GRCm39)	I229L	probably benign	Het
Tmem132c	T	A	5: 127,436,679 (GRCm39)	L56Q	probably damaging	Het
Togaram2	C	T	17: 72,016,638 (GRCm39)	A665V	probably damaging	Het
Ttn	G	A	2: 76,537,390 (GRCm39)	T34846I	probably benign	Het
Tyr	G	A	7: 87,142,548 (GRCm39)	A4V	probably benign	Het
Ubap2	A	C	4: 41,206,221 (GRCm39)	F549L	probably damaging	Het
Usp2	T	C	9: 44,001,339 (GRCm39)	S294P	probably damaging	Het
Vrk3	A	G	7: 44,407,187 (GRCm39)	N53D	probably damaging	Het
Zfp324	T	C	7: 12,705,142 (GRCm39)	S444P	probably damaging	Het
Zfp597	T	C	16: 3,683,791 (GRCm39)	I322V	probably benign	Het

Other mutations in St6galnac1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00227:St6galnac1	APN	11	116,658,532 (GRCm39)	missense	probably damaging	1.00
IGL01451:St6galnac1	APN	11	116,660,165 (GRCm39)	missense	probably benign	0.00
IGL01873:St6galnac1	APN	11	116,657,437 (GRCm39)	missense	probably damaging	0.98
IGL02569:St6galnac1	APN	11	116,658,528 (GRCm39)	missense	probably damaging	1.00
IGL02799:St6galnac1	APN	11	116,657,473 (GRCm39)	splice site	probably benign
IGL02935:St6galnac1	APN	11	116,660,171 (GRCm39)	missense	probably benign
IGL03124:St6galnac1	APN	11	116,666,125 (GRCm39)	missense	probably benign	0.00
PIT4520001:St6galnac1	UTSW	11	116,660,175 (GRCm39)	missense	probably benign	0.00
R0126:St6galnac1	UTSW	11	116,657,410 (GRCm39)	missense	probably benign	0.00
R0363:St6galnac1	UTSW	11	116,659,756 (GRCm39)	missense	probably benign	0.36
R0394:St6galnac1	UTSW	11	116,657,466 (GRCm39)	missense	probably damaging	0.99
R0828:St6galnac1	UTSW	11	116,659,823 (GRCm39)	missense	probably benign	0.05
R1569:St6galnac1	UTSW	11	116,660,097 (GRCm39)	missense	possibly damaging	0.46
R1570:St6galnac1	UTSW	11	116,657,474 (GRCm39)	splice site	probably benign
R1591:St6galnac1	UTSW	11	116,656,689 (GRCm39)	missense	probably damaging	1.00
R1602:St6galnac1	UTSW	11	116,660,113 (GRCm39)	missense	probably benign	0.00
R2088:St6galnac1	UTSW	11	116,659,933 (GRCm39)	missense	probably benign	0.00
R2212:St6galnac1	UTSW	11	116,656,682 (GRCm39)	missense	probably damaging	1.00
R2266:St6galnac1	UTSW	11	116,658,673 (GRCm39)	nonsense	probably null
R3413:St6galnac1	UTSW	11	116,656,682 (GRCm39)	missense	probably damaging	1.00
R3835:St6galnac1	UTSW	11	116,657,109 (GRCm39)	missense	probably damaging	1.00
R5016:St6galnac1	UTSW	11	116,656,706 (GRCm39)	missense	probably damaging	1.00
R5446:St6galnac1	UTSW	11	116,657,095 (GRCm39)	missense	probably benign	0.37
R6625:St6galnac1	UTSW	11	116,656,717 (GRCm39)	missense	probably damaging	1.00
R6805:St6galnac1	UTSW	11	116,659,770 (GRCm39)	missense	probably damaging	1.00
R7133:St6galnac1	UTSW	11	116,657,899 (GRCm39)	missense	possibly damaging	0.89
R7491:St6galnac1	UTSW	11	116,660,010 (GRCm39)	missense	probably benign	0.14
R7724:St6galnac1	UTSW	11	116,656,898 (GRCm39)	critical splice donor site	probably null
R7812:St6galnac1	UTSW	11	116,659,927 (GRCm39)	missense	probably benign	0.16
R8160:St6galnac1	UTSW	11	116,666,316 (GRCm39)	start gained	probably benign
R8341:St6galnac1	UTSW	11	116,659,714 (GRCm39)	missense	probably benign	0.00
R8373:St6galnac1	UTSW	11	116,660,059 (GRCm39)	missense	possibly damaging	0.62
R8379:St6galnac1	UTSW	11	116,666,325 (GRCm39)	start gained	probably benign
R8524:St6galnac1	UTSW	11	116,658,547 (GRCm39)	missense	possibly damaging	0.69
Z1177:St6galnac1	UTSW	11	116,666,254 (GRCm39)	start gained	probably benign

Predicted Primers

PCR Primer
(F):5'- TTTCCATCCACATACAAGGCGC -3'
(R):5'- AGTGTGTCTACAGCTCCTGC -3'

Sequencing Primer
(F):5'- TACAAGGCGCTCATAAGTCTC -3'
(R):5'- ACAGCTCCTGCCTCCTG -3'

Posted On

2019-05-13