Incidental Mutation 'R7233:Lars2'
ID 562646
Institutional Source Beutler Lab
Gene Symbol Lars2
Ensembl Gene ENSMUSG00000035202
Gene Name leucyl-tRNA synthetase, mitochondrial
Synonyms
MMRRC Submission 045343-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R7233 (G1)
Quality Score 225.009
Status Validated
Chromosome 9
Chromosomal Location 123196001-123291731 bp(+) (GRCm39)
Type of Mutation nonsense
DNA Base Change (assembly) G to T at 123241019 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Glycine to Stop codon at position 229 (G229*)
Ref Sequence ENSEMBL: ENSMUSP00000036710 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000038863] [ENSMUST00000217116]
AlphaFold Q8VDC0
Predicted Effect probably null
Transcript: ENSMUST00000038863
AA Change: G229*
SMART Domains Protein: ENSMUSP00000036710
Gene: ENSMUSG00000035202
AA Change: G229*

DomainStartEndE-ValueType
Pfam:tRNA-synt_1 57 223 7.6e-24 PFAM
Pfam:tRNA-synt_1g 83 239 9.3e-20 PFAM
Pfam:tRNA-synt_1_2 269 430 1.1e-8 PFAM
Pfam:tRNA-synt_1 434 609 5.6e-8 PFAM
Pfam:tRNA-synt_1g 589 682 1.2e-6 PFAM
Pfam:tRNA-synt_1 633 678 1.6e-7 PFAM
Pfam:Anticodon_1 724 867 9.2e-13 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000217116
AA Change: G229*
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.8%
Validation Efficiency 100% (75/75)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a class 1 aminoacyl-tRNA synthetase, mitochondrial leucyl-tRNA synthetase. Each of the twenty aminoacyl-tRNA synthetases catalyzes the aminoacylation of a specific tRNA or tRNA isoaccepting family with the cognate amino acid. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 76 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Acox3 A G 5: 35,762,641 (GRCm39) K505R probably benign Het
Arhgap24 A G 5: 103,026,367 (GRCm39) K263E probably benign Het
Ark2n C A 18: 77,722,882 (GRCm39) V385F probably damaging Het
Armc2 A T 10: 41,799,800 (GRCm39) V686D probably damaging Het
Bhmt T A 13: 93,758,025 (GRCm39) K229* probably null Het
Birc2 A T 9: 7,827,009 (GRCm39) C326S probably damaging Het
Blzf1 A T 1: 164,123,512 (GRCm39) probably null Het
Camsap3 T A 8: 3,650,371 (GRCm39) F223Y probably damaging Het
Ccdc126 C T 6: 49,316,775 (GRCm39) T85M probably damaging Het
Ccng2 C G 5: 93,421,202 (GRCm39) S237R probably benign Het
Ces2h T A 8: 105,744,088 (GRCm39) C279S probably damaging Het
Cfap44 T A 16: 44,242,771 (GRCm39) L725Q probably damaging Het
Cibar2 A G 8: 120,898,661 (GRCm39) L131P probably damaging Het
Clip1 T C 5: 123,749,922 (GRCm39) E987G probably damaging Het
Cog1 G T 11: 113,540,556 (GRCm39) R57L probably damaging Het
Ctdspl T C 9: 118,849,114 (GRCm39) probably null Het
Dnaaf9 C A 2: 130,648,708 (GRCm39) R258L unknown Het
Dnttip2 T C 3: 122,070,039 (GRCm39) V418A probably benign Het
Dop1a G A 9: 86,403,749 (GRCm39) A186T probably benign Het
Efcab3 T C 11: 104,730,669 (GRCm39) S1966P possibly damaging Het
Engase T A 11: 118,373,827 (GRCm39) V323E probably damaging Het
Farsb A G 1: 78,447,718 (GRCm39) probably null Het
Fpr2 G T 17: 18,113,766 (GRCm39) W254L probably damaging Het
Frmd3 A C 4: 73,932,023 (GRCm39) H6P probably benign Het
Fscn1 C T 5: 142,956,029 (GRCm39) S366L possibly damaging Het
Galt T A 4: 41,758,267 (GRCm39) I344N probably benign Het
Gfra4 A T 2: 130,883,037 (GRCm39) V194E probably damaging Het
Golgb1 T C 16: 36,735,120 (GRCm39) S1497P possibly damaging Het
Igfn1 A C 1: 135,897,873 (GRCm39) S898A probably benign Het
Igkv1-135 T C 6: 67,587,332 (GRCm39) S68P probably benign Het
Lama2 A T 10: 27,107,659 (GRCm39) C784S probably damaging Het
Lats2 A T 14: 57,960,151 (GRCm39) probably null Het
Lgr6 A C 1: 134,928,214 (GRCm39) probably null Het
Lrp1 A T 10: 127,430,930 (GRCm39) I373N probably damaging Het
Maml2 A T 9: 13,532,067 (GRCm39) H427L Het
Mansc1 A G 6: 134,598,806 (GRCm39) V37A probably damaging Het
Map4k3 A G 17: 80,905,077 (GRCm39) V738A possibly damaging Het
Mastl A G 2: 23,023,670 (GRCm39) I351T probably benign Het
Mcmdc2 T G 1: 10,002,408 (GRCm39) probably null Het
Mrgprd A G 7: 144,875,672 (GRCm39) D181G possibly damaging Het
Msantd5f9 G T 4: 73,835,808 (GRCm39) L219M probably benign Het
Msra T C 14: 64,360,714 (GRCm39) Y209C probably damaging Het
Musk A G 4: 58,373,307 (GRCm39) E759G possibly damaging Het
Nab1 T C 1: 52,498,378 (GRCm39) *487W probably null Het
Or2z9 A G 8: 72,853,900 (GRCm39) T99A probably benign Het
Or5p66 T A 7: 107,885,923 (GRCm39) T137S probably benign Het
Pkdrej A G 15: 85,705,349 (GRCm39) S196P probably damaging Het
Pln A G 10: 53,220,008 (GRCm39) T17A probably damaging Het
Polrmt A T 10: 79,581,619 (GRCm39) probably null Het
Ppp1r14a T A 7: 28,988,949 (GRCm39) Y64N probably damaging Het
Ppp1r9a A T 6: 5,134,804 (GRCm39) H959L probably benign Het
Pramel42 A T 5: 94,685,524 (GRCm39) M395L probably benign Het
Prmt7 A G 8: 106,946,642 (GRCm39) T75A probably damaging Het
Prom1 T C 5: 44,194,816 (GRCm39) S319G possibly damaging Het
Prtg G A 9: 72,819,273 (GRCm39) G1089S probably benign Het
Ptprd T C 4: 75,978,020 (GRCm39) D596G probably benign Het
Rbm12 C T 2: 155,937,894 (GRCm39) G793S unknown Het
Rora A T 9: 69,104,804 (GRCm39) R43* probably null Het
Sez6 T C 11: 77,863,963 (GRCm39) Y482H probably damaging Het
Skint2 A T 4: 112,483,122 (GRCm39) N176Y probably damaging Het
Slc44a2 G T 9: 21,259,445 (GRCm39) probably null Het
Sox6 A G 7: 115,089,044 (GRCm39) V606A possibly damaging Het
Spa17 T C 9: 37,514,587 (GRCm39) probably null Het
Syne1 A C 10: 5,252,160 (GRCm39) L2498R probably damaging Het
Synpo2 T G 3: 122,911,333 (GRCm39) H104P probably benign Het
Tapbp G T 17: 34,138,943 (GRCm39) A46S probably damaging Het
Tbc1d30 C A 10: 121,107,962 (GRCm39) R480L probably benign Het
Tshz1 T C 18: 84,032,944 (GRCm39) D488G possibly damaging Het
Ulk1 A G 5: 110,956,908 (GRCm39) L70P probably damaging Het
Zcchc17 T A 4: 130,221,116 (GRCm39) D145V probably damaging Het
Zfp318 T A 17: 46,716,978 (GRCm39) L1037M probably damaging Het
Zfp324 C T 7: 12,704,524 (GRCm39) Q238* probably null Het
Zfp874a A G 13: 67,590,776 (GRCm39) Y303H possibly damaging Het
Zfp975 T C 7: 42,311,918 (GRCm39) K232E probably benign Het
Zfp982 T A 4: 147,597,718 (GRCm39) N358K probably benign Het
Zmiz1 C T 14: 25,650,092 (GRCm39) P417S possibly damaging Het
Other mutations in Lars2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01743:Lars2 APN 9 123,282,313 (GRCm39) missense probably damaging 0.98
IGL01993:Lars2 APN 9 123,224,008 (GRCm39) splice site probably benign
IGL02155:Lars2 APN 9 123,284,047 (GRCm39) missense probably damaging 0.99
IGL02941:Lars2 APN 9 123,288,650 (GRCm39) missense probably damaging 0.97
IGL03090:Lars2 APN 9 123,285,025 (GRCm39) missense probably damaging 1.00
IGL03271:Lars2 APN 9 123,288,549 (GRCm39) splice site probably null
IGL03386:Lars2 APN 9 123,282,455 (GRCm39) nonsense probably null
IGL03410:Lars2 APN 9 123,247,841 (GRCm39) missense possibly damaging 0.87
ulrich UTSW 9 123,247,758 (GRCm39) missense probably damaging 0.99
K3955:Lars2 UTSW 9 123,206,842 (GRCm39) missense probably damaging 1.00
P0038:Lars2 UTSW 9 123,206,842 (GRCm39) missense probably damaging 1.00
R0276:Lars2 UTSW 9 123,267,186 (GRCm39) splice site probably benign
R1671:Lars2 UTSW 9 123,247,344 (GRCm39) missense probably benign 0.02
R1829:Lars2 UTSW 9 123,260,982 (GRCm39) missense probably benign 0.00
R2219:Lars2 UTSW 9 123,247,845 (GRCm39) missense probably damaging 0.98
R2220:Lars2 UTSW 9 123,247,845 (GRCm39) missense probably damaging 0.98
R4610:Lars2 UTSW 9 123,247,758 (GRCm39) missense probably damaging 0.99
R5027:Lars2 UTSW 9 123,270,560 (GRCm39) missense probably benign 0.38
R5195:Lars2 UTSW 9 123,282,375 (GRCm39) missense probably damaging 0.97
R5597:Lars2 UTSW 9 123,284,047 (GRCm39) missense probably damaging 0.99
R5756:Lars2 UTSW 9 123,267,264 (GRCm39) missense probably damaging 1.00
R5783:Lars2 UTSW 9 123,290,661 (GRCm39) missense probably benign
R6045:Lars2 UTSW 9 123,201,053 (GRCm39) missense probably damaging 1.00
R6235:Lars2 UTSW 9 123,240,945 (GRCm39) missense probably damaging 1.00
R6323:Lars2 UTSW 9 123,270,659 (GRCm39) nonsense probably null
R6377:Lars2 UTSW 9 123,283,825 (GRCm39) missense probably benign 0.00
R6395:Lars2 UTSW 9 123,200,990 (GRCm39) missense probably benign 0.06
R7094:Lars2 UTSW 9 123,288,650 (GRCm39) missense probably damaging 0.99
R7144:Lars2 UTSW 9 123,261,058 (GRCm39) missense probably damaging 1.00
R7254:Lars2 UTSW 9 123,284,028 (GRCm39) missense possibly damaging 0.93
R7350:Lars2 UTSW 9 123,256,545 (GRCm39) missense probably damaging 1.00
R7413:Lars2 UTSW 9 123,288,568 (GRCm39) missense probably benign 0.30
R7614:Lars2 UTSW 9 123,224,176 (GRCm39) missense
R7683:Lars2 UTSW 9 123,206,895 (GRCm39) critical splice donor site probably null
R8000:Lars2 UTSW 9 123,265,309 (GRCm39) missense probably damaging 1.00
R8061:Lars2 UTSW 9 123,288,562 (GRCm39) missense probably benign
R8355:Lars2 UTSW 9 123,283,780 (GRCm39) missense probably damaging 1.00
R8364:Lars2 UTSW 9 123,241,019 (GRCm39) nonsense probably null
R8818:Lars2 UTSW 9 123,221,892 (GRCm39) missense possibly damaging 0.94
R9007:Lars2 UTSW 9 123,260,980 (GRCm39) nonsense probably null
R9351:Lars2 UTSW 9 123,265,366 (GRCm39) missense probably benign 0.38
Z1177:Lars2 UTSW 9 123,283,847 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- AGCTTACTATTGGCACATTGGC -3'
(R):5'- CATGAACAACACTGAGGCTCTC -3'

Sequencing Primer
(F):5'- TATTGGCACATTGGCCAAGC -3'
(R):5'- CTGCCTCCCATGTCTTAGGAC -3'
Posted On 2019-06-26