Mutagenetix > Incidental Mutation

Incidental Mutation 'R8313:Senp5'

641530

Institutional Source

Beutler Lab

Gene Symbol

Senp5

Ensembl Gene

ENSMUSG00000022772

Gene Name

SUMO/sentrin specific peptidase 5

Synonyms

A730063F07Rik, 6230429P13Rik

MMRRC Submission

067797-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R8313 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

31778490-31822105 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 31808117 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 379 (D379G)

Ref Sequence

ENSEMBL: ENSMUSP00000023457 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000023457] [ENSMUST00000129900] [ENSMUST00000155515]

AlphaFold

Q6NXL6

Predicted Effect

probably benign
Transcript: ENSMUST00000023457
AA Change: D379G

PolyPhen 2 Score 0.097 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000023457
Gene: ENSMUSG00000022772
AA Change: D379G

Domain	Start	End	E-Value	Type
low complexity region	2	11	N/A	INTRINSIC
low complexity region	441	452	N/A	INTRINSIC
Pfam:Peptidase_C48	575	747	3.9e-45	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000129900
AA Change: D352G

PolyPhen 2 Score 0.077 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000115257
Gene: ENSMUSG00000022772
AA Change: D352G

Domain	Start	End	E-Value	Type
low complexity region	414	425	N/A	INTRINSIC
Pfam:Peptidase_C48	548	603	5.8e-9	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000155515

SMART Domains

Protein: ENSMUSP00000117481
Gene: ENSMUSG00000022772

Domain	Start	End	E-Value	Type
low complexity region	22	33	N/A	INTRINSIC
Pfam:Peptidase_C48	156	208	2.7e-9	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 99.0%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The reversible posttranslational modification of proteins by the addition of small ubiquitin-like SUMO proteins (see SUMO1; MIM 601912) is required for numerous biologic processes. SUMO-specific proteases, such as SENP5, are responsible for the initial processing of SUMO precursors to generate a C-terminal diglycine motif required for the conjugation reaction. They also have isopeptidase activity for the removal of SUMO from high molecular mass SUMO conjugates (Di Bacco et al., 2006 [PubMed 16738315]).[supplied by OMIM, Jun 2009]

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Alkal2	G	T	12: 30,934,850 (GRCm39)	G23V	probably damaging	Het
Atl2	C	T	17: 80,160,033 (GRCm39)	W518*	probably null	Het
Atp13a2	G	A	4: 140,730,046 (GRCm39)	V646I	probably benign	Het
Bcar1	A	T	8: 112,440,270 (GRCm39)	F575I	probably benign	Het
Bpifa6	T	A	2: 153,831,178 (GRCm39)	L248*	probably null	Het
Ccdc38	T	C	10: 93,399,111 (GRCm39)	L193P	probably damaging	Het
Ch25h	A	C	19: 34,452,138 (GRCm39)	I130S	probably benign	Het
Chaf1a	C	A	17: 56,351,109 (GRCm39)	Q30K	unknown	Het
Dab2ip	T	C	2: 35,617,440 (GRCm39)	L1106S	probably damaging	Het
Dnah3	A	G	7: 119,550,375 (GRCm39)	Y3315H	probably benign	Het
Dnah7b	G	A	1: 46,214,456 (GRCm39)	V1074I	possibly damaging	Het
Efemp1	A	G	11: 28,860,691 (GRCm39)	Q200R	probably benign	Het
Eif1ad3	A	T	12: 87,843,764 (GRCm39)	D137V	unknown	Het
Epx	C	T	11: 87,763,557 (GRCm39)	R221Q	possibly damaging	Het
Exosc7	T	C	9: 122,956,942 (GRCm39)	L109P	probably damaging	Het
Fbxo22	T	A	9: 55,128,344 (GRCm39)	F222I	probably damaging	Het
Fcgbp	A	G	7: 27,785,769 (GRCm39)	D402G	probably benign	Het
Foxr1	A	G	9: 44,347,351 (GRCm39)	V62A	probably damaging	Het
Gm8267	A	T	14: 44,961,515 (GRCm39)	H59Q	probably damaging	Het
Gnptab	T	A	10: 88,275,071 (GRCm39)	Y1090N	probably damaging	Het
Gpr20	A	G	15: 73,568,161 (GRCm39)	F76S	probably damaging	Het
Gpr33	A	G	12: 52,070,907 (GRCm39)	V44A	probably benign	Het
Grin3a	G	A	4: 49,665,599 (GRCm39)	T1012I	probably benign	Het
Itga1	T	A	13: 115,103,120 (GRCm39)	T1104S	probably benign	Het
Kidins220	T	A	12: 25,054,110 (GRCm39)	Y537N	probably damaging	Het
Lama1	A	G	17: 68,057,515 (GRCm39)	T530A		Het
Lysmd2	A	T	9: 75,533,040 (GRCm39)		probably benign	Het
Mdk	T	C	2: 91,761,178 (GRCm39)	K128E	unknown	Het
Mphosph8	AC	A	14: 56,916,062 (GRCm39)		probably null	Het
Muc16	A	C	9: 18,436,443 (GRCm39)	L7915W	possibly damaging	Het
Muc4	A	T	16: 32,753,423 (GRCm38)	T1100S	probably benign	Het
Mxra7	T	C	11: 116,695,376 (GRCm39)	Y176C	probably damaging	Het
Myh15	C	A	16: 48,940,381 (GRCm39)	T777N	probably damaging	Het
Myo18b	A	G	5: 113,023,045 (GRCm39)	S116P	unknown	Het
Noc3l	A	G	19: 38,784,254 (GRCm39)	L543P	probably damaging	Het
Or5h24	C	T	16: 58,919,004 (GRCm39)	G117D	unknown	Het
Or7a39	C	T	10: 78,715,170 (GRCm39)	P55S	probably benign	Het
Or8c10	T	A	9: 38,279,346 (GRCm39)	V168E	probably damaging	Het
Pkm	G	T	9: 59,575,902 (GRCm39)	R106L	probably benign	Het
Prkab2	G	T	3: 97,570,911 (GRCm39)	V112F	probably benign	Het
Prkaca	A	T	8: 84,717,151 (GRCm39)	N172Y	probably damaging	Het
Prmt8	A	G	6: 127,666,813 (GRCm39)	V387A	probably benign	Het
Rad17	T	C	13: 100,761,074 (GRCm39)	T485A	probably benign	Het
Rita1	G	T	5: 120,747,716 (GRCm39)	T194K	possibly damaging	Het
Rogdi	C	A	16: 4,831,313 (GRCm39)		probably benign	Het
Slc4a4	A	G	5: 89,194,122 (GRCm39)	K201E	possibly damaging	Het
Slc9a4	C	T	1: 40,619,520 (GRCm39)		probably benign	Het
Tmem175	T	A	5: 108,791,075 (GRCm39)	S208R	probably benign	Het
Tmem237	A	T	1: 59,147,237 (GRCm39)	Y299N	probably damaging	Het
Tnrc6a	T	A	7: 122,769,936 (GRCm39)	N575K	possibly damaging	Het
Trak2	A	T	1: 58,960,306 (GRCm39)	C232*	probably null	Het
Ubr3	A	G	2: 69,775,478 (GRCm39)	H589R	probably damaging	Het
Vcp	T	C	4: 42,988,728 (GRCm39)	T249A	possibly damaging	Het
Vmn1r208	G	C	13: 22,956,947 (GRCm39)	I183M	probably benign	Het
Vmn1r231	C	T	17: 21,110,289 (GRCm39)	V209I	probably benign	Het
Vmn1r80	T	C	7: 11,926,994 (GRCm39)	F35L	probably benign	Het
Vmn2r58	A	T	7: 41,521,952 (GRCm39)	I48N	probably benign	Het
Vstm2a	T	A	11: 16,231,898 (GRCm39)	V231E	probably damaging	Het
Zfp108	A	C	7: 23,960,087 (GRCm39)	Y226S	possibly damaging	Het
Zfp445	A	T	9: 122,682,695 (GRCm39)	N415K	possibly damaging	Het
Zfp938	T	G	10: 82,061,422 (GRCm39)	R399S	possibly damaging	Het
Zmym4	G	A	4: 126,804,762 (GRCm39)	H464Y	probably benign	Het

Other mutations in Senp5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00838:Senp5	APN	16	31,807,991 (GRCm39)	missense	probably damaging	1.00
IGL00990:Senp5	APN	16	31,809,092 (GRCm39)	missense	probably benign	0.00
IGL01707:Senp5	APN	16	31,808,588 (GRCm39)	missense	probably damaging	0.99
IGL01923:Senp5	APN	16	31,784,634 (GRCm39)	missense	probably damaging	1.00
IGL01997:Senp5	APN	16	31,782,288 (GRCm39)	missense	probably damaging	0.97
IGL02273:Senp5	APN	16	31,808,690 (GRCm39)	missense	probably benign	0.14
IGL02560:Senp5	APN	16	31,808,210 (GRCm39)	missense	probably benign
IGL02651:Senp5	APN	16	31,808,897 (GRCm39)	missense	probably benign	0.04
IGL02830:Senp5	APN	16	31,802,303 (GRCm39)	splice site	probably benign
R0578:Senp5	UTSW	16	31,808,163 (GRCm39)	missense	possibly damaging	0.75
R1879:Senp5	UTSW	16	31,802,642 (GRCm39)	missense	probably damaging	1.00
R2153:Senp5	UTSW	16	31,787,692 (GRCm39)	missense	probably damaging	1.00
R4903:Senp5	UTSW	16	31,802,117 (GRCm39)	missense	probably damaging	1.00
R5092:Senp5	UTSW	16	31,807,960 (GRCm39)	missense	probably benign	0.00
R5590:Senp5	UTSW	16	31,808,331 (GRCm39)	missense	probably damaging	0.99
R6346:Senp5	UTSW	16	31,802,665 (GRCm39)	missense	probably damaging	1.00
R6362:Senp5	UTSW	16	31,808,702 (GRCm39)	missense	probably damaging	0.99
R6762:Senp5	UTSW	16	31,808,702 (GRCm39)	missense	probably damaging	0.99
R7002:Senp5	UTSW	16	31,802,593 (GRCm39)	missense	probably damaging	1.00
R7027:Senp5	UTSW	16	31,808,113 (GRCm39)	missense	probably benign
R7436:Senp5	UTSW	16	31,794,847 (GRCm39)	missense	unknown
R7721:Senp5	UTSW	16	31,809,252 (GRCm39)	start codon destroyed	unknown
R7847:Senp5	UTSW	16	31,808,991 (GRCm39)	missense	probably benign	0.25
R7992:Senp5	UTSW	16	31,796,514 (GRCm39)	missense	probably damaging	1.00
R8081:Senp5	UTSW	16	31,784,577 (GRCm39)	missense	probably damaging	1.00
R8147:Senp5	UTSW	16	31,808,128 (GRCm39)	missense	probably benign	0.00
R8353:Senp5	UTSW	16	31,808,166 (GRCm39)	missense	probably benign	0.00
R8453:Senp5	UTSW	16	31,808,166 (GRCm39)	missense	probably benign	0.00
R8506:Senp5	UTSW	16	31,787,719 (GRCm39)	missense	probably damaging	1.00
R9079:Senp5	UTSW	16	31,787,718 (GRCm39)	missense	probably damaging	1.00
R9317:Senp5	UTSW	16	31,802,390 (GRCm39)	missense	probably damaging	1.00
R9776:Senp5	UTSW	16	31,782,279 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGGAAGTTCTCATTCTGGGCAG -3'
(R):5'- TCAGCCATACTTTCCAGACATG -3'

Sequencing Primer
(F):5'- ATTCTGGGCAGGCTCCTCAG -3'
(R):5'- AAACTGTCACGTGCCTGATG -3'

Posted On

2020-07-28