Incidental Mutation 'R1052:Pla2g4c'
| ID |
94046 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Pla2g4c
|
| Ensembl Gene |
ENSMUSG00000033847 |
| Gene Name |
phospholipase A2, group IVC (cytosolic, calcium-independent) |
| Synonyms |
CPLA2-gamma |
| MMRRC Submission |
039142-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.084)
|
| Stock # |
R1052 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
7 |
| Chromosomal Location |
13058580-13094597 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to A
at 13077334 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Valine to Glutamic Acid
at position 292
(V292E)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000127060
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000043612]
[ENSMUST00000108528]
[ENSMUST00000167232]
|
| AlphaFold |
Q64GA5 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000043612
AA Change: V282E
PolyPhen 2
Score 0.329 (Sensitivity: 0.90; Specificity: 0.89)
|
| SMART Domains |
Protein: ENSMUSP00000043672
Gene: ENSMUSG00000033847
AA Change: V282E
| Domain | Start | End | E-Value | Type |
|---|
|
PLAc
|
1 |
534 |
1.97e-8 |
SMART |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000108528
AA Change: V292E
PolyPhen 2
Score 0.951 (Sensitivity: 0.79; Specificity: 0.95)
|
| SMART Domains |
Protein: ENSMUSP00000104168
Gene: ENSMUSG00000033847
AA Change: V292E
| Domain | Start | End | E-Value | Type |
|---|
|
PLAc
|
1 |
544 |
1.23e-8 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000157290
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000167232
AA Change: V292E
PolyPhen 2
Score 0.951 (Sensitivity: 0.79; Specificity: 0.95)
|
| SMART Domains |
Protein: ENSMUSP00000127060
Gene: ENSMUSG00000033847
AA Change: V292E
| Domain | Start | End | E-Value | Type |
|---|
|
PLAc
|
1 |
544 |
1.23e-8 |
SMART |
|
| Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.3%
- 10x: 96.3%
- 20x: 92.6%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein which is a member of the phospholipase A2 enzyme family which hydrolyzes glycerophospholipids to produce free fatty acids and lysophospholipids, both of which serve as precursors in the production of signaling molecules. The encoded protein has been shown to be a calcium-independent and membrane bound enzyme. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Apr 2009]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 52 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abtb2 |
A |
T |
2: 103,535,417 (GRCm39) |
Y528F |
possibly damaging |
Het |
| Acad10 |
G |
A |
5: 121,787,604 (GRCm39) |
T115I |
possibly damaging |
Het |
| Adam19 |
T |
C |
11: 46,018,092 (GRCm39) |
F385L |
probably damaging |
Het |
| Adgb |
T |
C |
10: 10,318,357 (GRCm39) |
N162D |
probably benign |
Het |
| Arhgap20 |
C |
A |
9: 51,757,570 (GRCm39) |
P521T |
probably damaging |
Het |
| Arsa |
A |
T |
15: 89,359,380 (GRCm39) |
L134Q |
probably damaging |
Het |
| Atp5f1b |
A |
G |
10: 127,925,921 (GRCm39) |
Y508C |
probably damaging |
Het |
| AW554918 |
G |
A |
18: 25,553,067 (GRCm39) |
M287I |
probably benign |
Het |
| Bmp4 |
T |
C |
14: 46,621,360 (GRCm39) |
K395E |
probably damaging |
Het |
| Cacna2d4 |
A |
G |
6: 119,277,294 (GRCm39) |
Y669C |
probably damaging |
Het |
| Casq2 |
T |
C |
3: 102,051,550 (GRCm39) |
|
probably null |
Het |
| Cdk5rap1 |
A |
T |
2: 154,202,519 (GRCm39) |
I237N |
possibly damaging |
Het |
| Cerk |
G |
C |
15: 86,033,565 (GRCm39) |
S286C |
possibly damaging |
Het |
| Cir1 |
A |
C |
2: 73,117,987 (GRCm39) |
L186R |
probably damaging |
Het |
| Csf3r |
A |
T |
4: 125,936,781 (GRCm39) |
|
probably null |
Het |
| Cyp3a41a |
A |
T |
5: 145,642,621 (GRCm39) |
I246K |
possibly damaging |
Het |
| Cyp8b1 |
A |
G |
9: 121,744,348 (GRCm39) |
F328S |
possibly damaging |
Het |
| Dzank1 |
A |
T |
2: 144,355,365 (GRCm39) |
V110D |
probably benign |
Het |
| Gm6729 |
T |
A |
10: 86,376,799 (GRCm39) |
|
noncoding transcript |
Het |
| Gnpat |
T |
C |
8: 125,604,246 (GRCm39) |
F246L |
probably benign |
Het |
| Gnpat |
T |
A |
8: 125,605,255 (GRCm39) |
L248H |
probably damaging |
Het |
| Gstm7 |
T |
C |
3: 107,834,266 (GRCm39) |
T163A |
probably benign |
Het |
| Hspa5 |
A |
G |
2: 34,665,110 (GRCm39) |
T424A |
probably damaging |
Het |
| Itgb1 |
T |
G |
8: 129,439,786 (GRCm39) |
D158E |
probably damaging |
Het |
| Kif21a |
A |
G |
15: 90,819,853 (GRCm39) |
V1637A |
probably benign |
Het |
| Kl |
G |
T |
5: 150,905,985 (GRCm39) |
V452F |
probably damaging |
Het |
| Krt23 |
T |
C |
11: 99,369,045 (GRCm39) |
N416S |
probably benign |
Het |
| Lama4 |
A |
T |
10: 38,968,241 (GRCm39) |
H1461L |
possibly damaging |
Het |
| Lamc3 |
A |
G |
2: 31,818,814 (GRCm39) |
T1180A |
probably benign |
Het |
| Mboat2 |
T |
C |
12: 24,996,527 (GRCm39) |
Y145H |
probably damaging |
Het |
| Mlxipl |
T |
A |
5: 135,142,564 (GRCm39) |
I126N |
probably damaging |
Het |
| Myo16 |
T |
A |
8: 10,620,181 (GRCm39) |
N1577K |
possibly damaging |
Het |
| Nlrp4f |
A |
G |
13: 65,332,897 (GRCm39) |
V87A |
possibly damaging |
Het |
| Or5al5 |
A |
G |
2: 85,961,915 (GRCm39) |
F31L |
probably benign |
Het |
| Or6p1 |
A |
T |
1: 174,258,701 (GRCm39) |
K236* |
probably null |
Het |
| Pask |
A |
T |
1: 93,258,549 (GRCm39) |
D266E |
probably benign |
Het |
| Pcdhb17 |
A |
G |
18: 37,619,899 (GRCm39) |
Y563C |
probably damaging |
Het |
| Pdlim3 |
T |
A |
8: 46,349,837 (GRCm39) |
I49N |
probably damaging |
Het |
| Pramel23 |
T |
C |
4: 143,423,477 (GRCm39) |
I437M |
possibly damaging |
Het |
| Prrt4 |
G |
T |
6: 29,169,813 (GRCm39) |
Q880K |
possibly damaging |
Het |
| Pygb |
A |
G |
2: 150,628,858 (GRCm39) |
D24G |
probably benign |
Het |
| R3hcc1l |
T |
A |
19: 42,552,093 (GRCm39) |
D363E |
probably damaging |
Het |
| Rif1 |
A |
C |
2: 52,001,574 (GRCm39) |
Q1676P |
probably benign |
Het |
| Ryr1 |
C |
A |
7: 28,795,683 (GRCm39) |
R1069L |
probably damaging |
Het |
| Sdk2 |
C |
T |
11: 113,729,472 (GRCm39) |
|
silent |
Het |
| Slc2a13 |
A |
G |
15: 91,296,363 (GRCm39) |
V317A |
probably damaging |
Het |
| Slc35b4 |
A |
T |
6: 34,138,619 (GRCm39) |
F197I |
probably damaging |
Het |
| Tchhl1 |
G |
A |
3: 93,377,520 (GRCm39) |
V75I |
probably benign |
Het |
| Ubr4 |
T |
C |
4: 139,182,771 (GRCm39) |
S3521P |
possibly damaging |
Het |
| Zbtb14 |
C |
A |
17: 69,695,497 (GRCm39) |
F398L |
probably damaging |
Het |
| Zfp335 |
GTCCTCCTCCTCCTCCTC |
GTCCTCCTCCTCCTC |
2: 164,749,388 (GRCm39) |
|
probably benign |
Het |
| Zfp874a |
T |
G |
13: 67,590,539 (GRCm39) |
I382L |
possibly damaging |
Het |
|
| Other mutations in Pla2g4c |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00953:Pla2g4c
|
APN |
7 |
13,077,951 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL00972:Pla2g4c
|
APN |
7 |
13,074,583 (GRCm39) |
missense |
probably benign |
0.13 |
|
IGL01759:Pla2g4c
|
APN |
7 |
13,082,241 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02567:Pla2g4c
|
APN |
7 |
13,079,965 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02629:Pla2g4c
|
APN |
7 |
13,069,302 (GRCm39) |
nonsense |
probably null |
|
|
IGL02719:Pla2g4c
|
APN |
7 |
13,064,019 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02812:Pla2g4c
|
APN |
7 |
13,082,290 (GRCm39) |
missense |
probably damaging |
1.00 |
|
PIT4142001:Pla2g4c
|
UTSW |
7 |
13,077,316 (GRCm39) |
missense |
probably benign |
|
|
R0184:Pla2g4c
|
UTSW |
7 |
13,090,145 (GRCm39) |
missense |
probably benign |
0.16 |
|
R1747:Pla2g4c
|
UTSW |
7 |
13,071,655 (GRCm39) |
splice site |
probably benign |
|
|
R4381:Pla2g4c
|
UTSW |
7 |
13,079,990 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4486:Pla2g4c
|
UTSW |
7 |
13,071,676 (GRCm39) |
missense |
probably benign |
0.09 |
|
R4674:Pla2g4c
|
UTSW |
7 |
13,077,439 (GRCm39) |
missense |
probably null |
0.24 |
|
R4811:Pla2g4c
|
UTSW |
7 |
13,071,738 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5655:Pla2g4c
|
UTSW |
7 |
13,063,889 (GRCm39) |
splice site |
probably null |
|
|
R5791:Pla2g4c
|
UTSW |
7 |
13,073,617 (GRCm39) |
missense |
probably benign |
0.32 |
|
R5814:Pla2g4c
|
UTSW |
7 |
13,074,543 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6381:Pla2g4c
|
UTSW |
7 |
13,077,933 (GRCm39) |
missense |
probably benign |
0.05 |
|
R6395:Pla2g4c
|
UTSW |
7 |
13,077,933 (GRCm39) |
missense |
probably benign |
0.05 |
|
R6974:Pla2g4c
|
UTSW |
7 |
13,078,459 (GRCm39) |
critical splice donor site |
probably null |
|
|
R7257:Pla2g4c
|
UTSW |
7 |
13,059,669 (GRCm39) |
missense |
possibly damaging |
0.46 |
|
R7823:Pla2g4c
|
UTSW |
7 |
13,063,944 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8385:Pla2g4c
|
UTSW |
7 |
13,063,589 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8737:Pla2g4c
|
UTSW |
7 |
13,069,154 (GRCm39) |
missense |
probably benign |
0.15 |
|
R8933:Pla2g4c
|
UTSW |
7 |
13,073,627 (GRCm39) |
missense |
probably benign |
0.25 |
|
R9086:Pla2g4c
|
UTSW |
7 |
13,071,692 (GRCm39) |
missense |
probably benign |
0.13 |
|
R9121:Pla2g4c
|
UTSW |
7 |
13,091,010 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9226:Pla2g4c
|
UTSW |
7 |
13,059,671 (GRCm39) |
missense |
possibly damaging |
0.83 |
|
R9456:Pla2g4c
|
UTSW |
7 |
13,077,900 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1088:Pla2g4c
|
UTSW |
7 |
13,063,678 (GRCm39) |
missense |
probably benign |
0.13 |
|
Z1177:Pla2g4c
|
UTSW |
7 |
13,082,252 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
| Predicted Primers |
PCR Primer
(F):5'- TGGGAGGACCATTCAGGTTGTAAGG -3'
(R):5'- ACGTATCAGGGCATCAGGGATCAC -3'
Sequencing Primer
(F):5'- GACCATTCAGGTTGTAAGGAATTGC -3'
(R):5'- GCATCAGGGATCACTGGTATACAC -3'
|
| Posted On |
2014-01-05 |
Incidental Mutation