Mutagenetix > Incidental Mutation

Incidental Mutation 'R1899:Srsf11'

214061

Institutional Source

Beutler Lab

Gene Symbol

Srsf11

Ensembl Gene

ENSMUSG00000055436

Gene Name

serine/arginine-rich splicing factor 11

Synonyms

0610009J05Rik, Sfrs11, 2610019N13Rik

MMRRC Submission

039919-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R1899 (G1)

Quality Score

135

Status

Validated

Chromosome

Chromosomal Location

158010473-158036639 bp(-) (GRCm38)

Type of Mutation

unclassified

DNA Base Change (assembly)

A to T at 158031580 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Gene Model

predicted gene model for transcript(s): [ENSMUST00000069025] [ENSMUST00000072875] [ENSMUST00000121326] [ENSMUST00000126716] [ENSMUST00000137444]

AlphaFold

E9Q6E5

Predicted Effect

unknown
Transcript: ENSMUST00000069025
AA Change: S35R

SMART Domains

Protein: ENSMUSP00000063916
Gene: ENSMUSG00000055436
AA Change: S35R

Domain	Start	End	E-Value	Type
low complexity region	64	88	N/A	INTRINSIC
low complexity region	91	114	N/A	INTRINSIC
low complexity region	186	264	N/A	INTRINSIC
low complexity region	271	310	N/A	INTRINSIC
low complexity region	328	335	N/A	INTRINSIC
low complexity region	365	374	N/A	INTRINSIC

Predicted Effect

unknown
Transcript: ENSMUST00000072875
AA Change: S18R

SMART Domains

Protein: ENSMUSP00000072651
Gene: ENSMUSG00000055436
AA Change: S18R

Domain	Start	End	E-Value	Type
low complexity region	5	24	N/A	INTRINSIC
RRM	27	101	3.13e-7	SMART
low complexity region	117	141	N/A	INTRINSIC
low complexity region	144	167	N/A	INTRINSIC
low complexity region	239	317	N/A	INTRINSIC
low complexity region	327	409	N/A	INTRINSIC
low complexity region	428	435	N/A	INTRINSIC
low complexity region	465	474	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000089922

Predicted Effect

unknown
Transcript: ENSMUST00000121326
AA Change: S53R

SMART Domains

Protein: ENSMUSP00000113685
Gene: ENSMUSG00000055436
AA Change: S53R

Domain	Start	End	E-Value	Type
low complexity region	2	16	N/A	INTRINSIC
low complexity region	40	59	N/A	INTRINSIC
RRM	62	136	3.13e-7	SMART
low complexity region	152	176	N/A	INTRINSIC
low complexity region	179	202	N/A	INTRINSIC
low complexity region	274	352	N/A	INTRINSIC
low complexity region	362	444	N/A	INTRINSIC
low complexity region	463	470	N/A	INTRINSIC
low complexity region	500	509	N/A	INTRINSIC

Predicted Effect

unknown
Transcript: ENSMUST00000126716
AA Change: S18R

SMART Domains

Protein: ENSMUSP00000114370
Gene: ENSMUSG00000055436
AA Change: S18R

Domain	Start	End	E-Value	Type
low complexity region	5	24	N/A	INTRINSIC
RRM	27	101	3.13e-7	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133090

Predicted Effect

unknown
Transcript: ENSMUST00000137444
AA Change: S18R

SMART Domains

Protein: ENSMUSP00000122686
Gene: ENSMUSG00000055436
AA Change: S18R

Domain	Start	End	E-Value	Type
low complexity region	5	24	N/A	INTRINSIC
RRM	27	101	3.13e-7	SMART
low complexity region	117	141	N/A	INTRINSIC
low complexity region	144	167	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000140491

SMART Domains

Protein: ENSMUSP00000118767
Gene: ENSMUSG00000055436

Domain	Start	End	E-Value	Type
Blast:RRM	2	42	1e-21	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000147304

SMART Domains

Protein: ENSMUSP00000115487
Gene: ENSMUSG00000055436

Domain	Start	End	E-Value	Type
RRM	7	81	3.13e-7	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000196034

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000197292

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000198192

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000199742

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 97.5%
3x: 97.0%
10x: 95.6%
20x: 93.4%

Validation Efficiency

94% (94/100)

MGI Phenotype

FUNCTION: The protein encoded by this gene is a member of the serine/arginine (SR)-rich family of pre-mRNA splicing factors, which constitute part of the spliceosome. Each of these factors contains an RNA recognition motif (RRM) for binding RNA and an RS domain for binding other proteins. The RS domain is rich in serine and arginine residues and facilitates interaction between different SR splicing factors. In addition to being critical for mRNA splicing, the SR proteins have also been shown to be involved in mRNA export from the nucleus and in translation. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2014]

Allele List at MGI

Other mutations in this stock

Total: 98 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
0610009O20Rik	T	C	18: 38,258,342	W378R	probably benign	Het
4930522L14Rik	T	A	5: 109,736,798	Q398L	probably benign	Het
4930596D02Rik	T	G	14: 35,810,132	K162T	probably damaging	Het
Abca8b	G	T	11: 109,937,918	T1353K	possibly damaging	Het
Abcg3	A	C	5: 104,938,199	C565G	probably damaging	Het
Actr3b	G	A	5: 25,829,538	V185I	possibly damaging	Het
Akap6	A	T	12: 53,141,852	E2016D	possibly damaging	Het
Aldh3b2	T	C	19: 3,978,662	V148A	possibly damaging	Het
Ankfy1	C	T	11: 72,754,407	Q771*	probably null	Het
Anks1b	A	G	10: 90,260,756	D425G	probably damaging	Het
Arrb1	T	C	7: 99,582,297		probably benign	Het
Atg2a	C	A	19: 6,245,067	T170N	probably damaging	Het
Atp8b5	C	T	4: 43,361,804	R617C	possibly damaging	Het
Bicra	T	C	7: 15,987,751	T614A	possibly damaging	Het
Cacna1i	A	G	15: 80,391,642	D167G	possibly damaging	Het
Calr4	T	G	4: 109,246,293		probably null	Het
Camsap3	G	T	8: 3,603,922	E515*	probably null	Het
Casp8ap2	T	C	4: 32,643,647	S907P	probably damaging	Het
Cdk19	T	A	10: 40,479,780		probably benign	Het
Chst14	A	G	2: 118,927,015	M122V	possibly damaging	Het
Cntn4	A	G	6: 106,675,813	M748V	probably benign	Het
Col7a1	A	G	9: 108,978,888	D2552G	unknown	Het
Cpeb2	C	A	5: 43,277,587	P600Q	probably damaging	Het
Cyp2a5	C	T	7: 26,839,033	R274*	probably null	Het
Dexi	A	G	16: 10,542,518	F58S	probably damaging	Het
Dlg5	C	A	14: 24,148,300	G1522W	probably damaging	Het
Dock2	T	C	11: 34,294,286	H1048R	probably benign	Het
Dpp4	T	C	2: 62,345,050		probably benign	Het
Dusp10	A	T	1: 184,069,180	K381N	possibly damaging	Het
Ercc4	A	G	16: 13,147,787	E761G	probably damaging	Het
Ern2	T	C	7: 122,183,842		probably benign	Het
Fam83f	A	T	15: 80,692,080	T311S	probably damaging	Het
Fat2	T	C	11: 55,262,178	D3736G	probably benign	Het
Fgf11	G	T	11: 69,801,453	T58K	probably benign	Het
Galntl5	C	G	5: 25,198,532	S167*	probably null	Het
Glg1	T	G	8: 111,165,674	E846D	probably benign	Het
Grm8	C	A	6: 28,125,895	E77D	probably damaging	Het
Hmcn1	A	T	1: 150,657,451	D3028E	probably damaging	Het
Htt	A	G	5: 34,907,085	I2943V	probably benign	Het
Ift80	T	C	3: 68,918,513	K498R	probably benign	Het
Ipo9	A	T	1: 135,400,146	M509K	probably damaging	Het
Kcnj3	T	C	2: 55,437,244	V15A	probably damaging	Het
Kcnn3	A	T	3: 89,520,455		probably benign	Het
Larp1b	T	A	3: 40,964,084	D53E	probably benign	Het
Ltf	T	C	9: 111,022,845	F117L	possibly damaging	Het
Maml1	A	G	11: 50,266,130	L406P	probably damaging	Het
Mnx1	G	A	5: 29,473,957	A376V	unknown	Het
Mroh2a	G	A	1: 88,235,376	R376H	probably benign	Het
Mrpl4	A	G	9: 21,006,831	Y111C	probably damaging	Het
Mto1	T	C	9: 78,461,517		probably benign	Het
Nalcn	A	T	14: 123,316,126	M972K	possibly damaging	Het
Nemf	T	C	12: 69,346,378	I225V	probably null	Het
Nipal4	T	G	11: 46,150,231	D379A	probably damaging	Het
Nktr	A	G	9: 121,748,866		probably benign	Het
Nlrp5	A	G	7: 23,404,797	T28A	probably benign	Het
Nxph1	T	A	6: 9,247,622	Y198N	probably damaging	Het
Olfr1037	A	T	2: 86,085,720	V19D	probably benign	Het
Olfr1230	T	C	2: 89,296,670	N200S	probably damaging	Het
Olfr1436	T	C	19: 12,298,343	Y263C	probably damaging	Het
P2rx7	A	G	5: 122,673,736	Y370C	probably benign	Het
Piezo1	T	C	8: 122,482,645		probably benign	Het
Piezo1	T	C	8: 122,489,566	D1401G	probably damaging	Het
Plxnd1	A	G	6: 115,969,363	L879P	probably benign	Het
Polr2a	A	T	11: 69,743,946	I636N	probably damaging	Het
Prex2	G	T	1: 11,162,366	E886*	probably null	Het
Proca1	A	T	11: 78,205,021	I73F	probably damaging	Het
Prss55	A	T	14: 64,079,390	V101E	probably benign	Het
Psg26	T	A	7: 18,478,425	H335L	probably benign	Het
Rai1	A	G	11: 60,185,920	E270G	probably benign	Het
Reep1	A	G	6: 71,780,797	N127D	probably benign	Het
Rims1	G	T	1: 22,428,474	P769Q	probably damaging	Het
Robo4	A	T	9: 37,404,070		probably benign	Het
Ryr2	A	T	13: 11,591,336	D888E	probably benign	Het
Scamp3	A	G	3: 89,180,260	N135D	probably damaging	Het
Sdk2	C	T	11: 113,838,646		silent	Het
Sema4f	A	G	6: 82,918,029	M395T	probably benign	Het
Sgip1	T	C	4: 102,968,337		probably null	Het
Sik2	A	T	9: 50,995,674		probably benign	Het
Smtn	G	T	11: 3,531,326	A223D	possibly damaging	Het
Spen	T	C	4: 141,470,343	T3405A	probably benign	Het
Srebf1	A	G	11: 60,203,486	L601P	probably damaging	Het
Tacc2	T	G	7: 130,624,202	S891R	possibly damaging	Het
Tbc1d17	T	A	7: 44,841,633		probably benign	Het
Tgfbr3l	C	A	8: 4,249,600	R128S	probably damaging	Het
Thsd1	G	A	8: 22,252,318		probably benign	Het
Tlx3	T	C	11: 33,203,072	S130G	probably benign	Het
Tmem25	A	T	9: 44,798,216		probably null	Het
Trak2	A	T	1: 58,946,336	M1K	probably null	Het
Trappc12	C	T	12: 28,746,985	E183K	probably damaging	Het
Ubl3	A	G	5: 148,509,280	V71A	possibly damaging	Het
Unc50	A	G	1: 37,438,799	Y254C	probably damaging	Het
Unkl	T	C	17: 25,229,460		probably null	Het
Uso1	T	A	5: 92,201,192	S819T	probably benign	Het
Yes1	A	T	5: 32,645,051	R103S	probably damaging	Het
Zfp131	A	G	13: 119,767,025	V396A	probably damaging	Het
Zfp553	T	C	7: 127,235,654	I127T	possibly damaging	Het
Zfp599	A	T	9: 22,251,549	N102K	probably benign	Het
Zmynd10	A	T	9: 107,550,037	Q288L	probably benign	Het

Other mutations in Srsf11

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01598:Srsf11	APN	3	158012035	unclassified	probably benign
IGL01600:Srsf11	APN	3	158019442	splice site	probably benign
IGL02724:Srsf11	APN	3	158016431	unclassified	probably benign
IGL03147:Srsf11	UTSW	3	158026740	missense	probably damaging	1.00
R0195:Srsf11	UTSW	3	158036535	unclassified	probably benign
R0578:Srsf11	UTSW	3	158012067	unclassified	probably benign
R0580:Srsf11	UTSW	3	158012067	unclassified	probably benign
R1075:Srsf11	UTSW	3	158012790	intron	probably benign
R1604:Srsf11	UTSW	3	158019311	critical splice donor site	probably null
R1797:Srsf11	UTSW	3	158019428	missense	possibly damaging	0.92
R1815:Srsf11	UTSW	3	158016427	unclassified	probably benign
R2105:Srsf11	UTSW	3	158019345	missense	probably damaging	0.99
R4605:Srsf11	UTSW	3	158022923	nonsense	probably null
R4655:Srsf11	UTSW	3	158023335	missense	probably benign	0.15
R4737:Srsf11	UTSW	3	158026732	nonsense	probably null
R5244:Srsf11	UTSW	3	158023344	unclassified	probably benign
R5245:Srsf11	UTSW	3	158023344	unclassified	probably benign
R5379:Srsf11	UTSW	3	158023344	unclassified	probably benign
R5401:Srsf11	UTSW	3	158023344	unclassified	probably benign
R5625:Srsf11	UTSW	3	158023344	unclassified	probably benign
R5763:Srsf11	UTSW	3	158023344	unclassified	probably benign
R5814:Srsf11	UTSW	3	158023344	unclassified	probably benign
R5938:Srsf11	UTSW	3	158023344	unclassified	probably benign
R5944:Srsf11	UTSW	3	158023344	unclassified	probably benign
R5945:Srsf11	UTSW	3	158023344	unclassified	probably benign
R6126:Srsf11	UTSW	3	158023344	unclassified	probably benign
R6175:Srsf11	UTSW	3	158023344	unclassified	probably benign
R6427:Srsf11	UTSW	3	158023344	unclassified	probably benign
R6435:Srsf11	UTSW	3	158023344	unclassified	probably benign
R6436:Srsf11	UTSW	3	158023344	unclassified	probably benign
R6614:Srsf11	UTSW	3	158023344	unclassified	probably benign
R6616:Srsf11	UTSW	3	158023344	unclassified	probably benign
R7615:Srsf11	UTSW	3	158016425	missense	unknown
R8787:Srsf11	UTSW	3	158012400	missense	unknown
R9352:Srsf11	UTSW	3	158012199	missense	unknown
R9547:Srsf11	UTSW	3	158012098	missense	unknown
X0017:Srsf11	UTSW	3	158016349	unclassified	probably benign

Predicted Primers

PCR Primer
(F):5'- CTTAAACTCCAATCGGGCGC -3'
(R):5'- ACGCGTACTTCCGGGATATG -3'

Sequencing Primer
(F):5'- TAAACTCCAATCGGGCGCTTATC -3'
(R):5'- TACTTCCGGGATATGGGCGC -3'

Posted On

2014-07-14