Incidental Mutation 'R5177:Gimap1'
ID 399578
Institutional Source Beutler Lab
Gene Symbol Gimap1
Ensembl Gene ENSMUSG00000090019
Gene Name GTPase, IMAP family member 1
Synonyms Imap38, 38kDa, IAP38, imap
MMRRC Submission 042757-MU
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.074) question?
Stock # R5177 (G1)
Quality Score 225
Status Validated
Chromosome 6
Chromosomal Location 48739054-48743795 bp(+) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) G to T at 48743098 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Glycine to Tryptophan at position 215 (G215W)
Ref Sequence ENSEMBL: ENSMUSP00000145479 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000054368] [ENSMUST00000055558] [ENSMUST00000127537] [ENSMUST00000140054] [ENSMUST00000204168] [ENSMUST00000204408]
AlphaFold no structure available at present
Predicted Effect probably damaging
Transcript: ENSMUST00000054368
AA Change: G215W

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)
SMART Domains Protein: ENSMUSP00000062108
Gene: ENSMUSG00000090019
AA Change: G215W

DomainStartEndE-ValueType
Pfam:AIG1 27 239 3.8e-81 PFAM
transmembrane domain 274 291 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000055558
SMART Domains Protein: ENSMUSP00000056820
Gene: ENSMUSG00000043505

DomainStartEndE-ValueType
Pfam:AIG1 27 240 5.4e-80 PFAM
Pfam:MMR_HSR1 28 151 9.5e-8 PFAM
transmembrane domain 283 305 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000127537
Predicted Effect noncoding transcript
Transcript: ENSMUST00000135174
Predicted Effect probably benign
Transcript: ENSMUST00000140054
SMART Domains Protein: ENSMUSP00000118345
Gene: ENSMUSG00000090019

DomainStartEndE-ValueType
Pfam:AIG1 27 74 1.2e-19 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000142703
Predicted Effect noncoding transcript
Transcript: ENSMUST00000147047
Predicted Effect noncoding transcript
Transcript: ENSMUST00000155906
Predicted Effect noncoding transcript
Transcript: ENSMUST00000203006
Predicted Effect noncoding transcript
Transcript: ENSMUST00000203797
Predicted Effect probably damaging
Transcript: ENSMUST00000204168
AA Change: G215W

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000145479
Gene: ENSMUSG00000090019
AA Change: G215W

DomainStartEndE-ValueType
Pfam:AIG1 27 239 3.8e-81 PFAM
transmembrane domain 274 291 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000204408
Predicted Effect noncoding transcript
Transcript: ENSMUST00000205031
Predicted Effect noncoding transcript
Transcript: ENSMUST00000205172
Meta Mutation Damage Score 0.6467 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.0%
  • 20x: 94.5%
Validation Efficiency 97% (71/73)
MGI Phenotype FUNCTION: This gene encodes a protein belonging to the GTP-binding superfamily and to the immuno-associated nucleotide (IAN) subfamily of nucleotide-binding proteins. In humans, the IAN subfamily genes are located in a cluster at 7q36.1. Sequence analysis identified two alternatively spliced variants that encode the same protein. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a null allele have defects in the development of mature B and T lymphocytes. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 67 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abcb11 C T 2: 69,285,295 R575Q probably damaging Het
AI464131 C A 4: 41,498,407 E408* probably null Het
Arhgap22 T G 14: 33,366,693 V377G probably benign Het
Asic4 T C 1: 75,450,839 I3T probably damaging Het
Atp2b4 T C 1: 133,728,768 T715A probably benign Het
Ccdc180 A T 4: 45,917,508 H283L probably damaging Het
Cfb A G 17: 34,859,026 V976A probably damaging Het
Cltc T C 11: 86,705,163 T1250A probably damaging Het
Cylc2 T C 4: 51,228,587 probably benign Het
Dcbld1 T A 10: 52,304,634 D131E probably damaging Het
Dmxl1 T C 18: 49,893,584 S1920P probably damaging Het
Dnajc13 G A 9: 104,230,986 H197Y probably benign Het
Dpy19l1 C T 9: 24,438,628 probably null Het
Ears2 A G 7: 122,044,460 probably benign Het
Epgn A C 5: 91,028,277 probably benign Het
Ern1 T C 11: 106,411,775 T418A probably benign Het
F12 G A 13: 55,420,168 P476S probably benign Het
Gal3st2c C T 1: 94,009,208 Q292* probably null Het
Galnt7 C A 8: 57,584,027 Q109H possibly damaging Het
Gm28042 T A 2: 120,041,601 probably null Het
Gm5414 A G 15: 101,625,817 I284T possibly damaging Het
Hddc3 A G 7: 80,343,166 E10G probably damaging Het
Hmgxb3 T C 18: 61,172,194 K31E probably damaging Het
Hspg2 A C 4: 137,518,772 Y989S probably damaging Het
Kif12 G A 4: 63,167,904 T402M probably benign Het
Klhdc4 A T 8: 121,813,790 L115* probably null Het
Lama2 C T 10: 27,190,703 V1061M possibly damaging Het
Llgl1 C T 11: 60,712,007 T836I possibly damaging Het
Maats1 A G 16: 38,332,321 S176P probably benign Het
Map4k4 A G 1: 39,986,762 D304G probably damaging Het
Matn2 A G 15: 34,433,514 Q915R possibly damaging Het
Myo18a A G 11: 77,864,842 probably benign Het
Nbn A T 4: 15,965,132 probably null Het
Nek8 G A 11: 78,170,471 Q383* probably null Het
Nme7 T G 1: 164,380,676 Y304* probably null Het
Nol8 A T 13: 49,661,112 H214L probably benign Het
Nostrin A T 2: 69,175,754 I261F possibly damaging Het
Olfr46 A G 7: 140,610,189 T8A probably benign Het
Olfr592 A T 7: 103,187,503 I301L probably benign Het
Oprk1 T G 1: 5,602,674 C345G probably damaging Het
Polrmt T C 10: 79,737,476 S998G probably benign Het
Ppp1r12c T A 7: 4,484,496 R393* probably null Het
Prpf3 T A 3: 95,849,724 probably benign Het
Rabl6 T C 2: 25,585,373 M563V probably benign Het
Rasa2 C A 9: 96,544,791 E775* probably null Het
Rc3h1 G T 1: 160,951,652 V552L probably damaging Het
Rhot1 A T 11: 80,246,766 N365Y possibly damaging Het
Rimbp3 G A 16: 17,209,917 V402M possibly damaging Het
Rusc2 A T 4: 43,421,805 probably null Het
Slc25a11 T C 11: 70,645,817 E141G probably damaging Het
Slc34a1 A T 13: 55,401,162 I142F probably damaging Het
Socs6 A C 18: 88,869,380 Y470* probably null Het
Sox12 A T 2: 152,397,178 L174Q unknown Het
Srl A G 16: 4,496,403 probably null Het
Tacc1 A T 8: 25,201,221 V22E probably damaging Het
Thsd7a A T 6: 12,379,583 C947* probably null Het
Tlr12 A C 4: 128,618,376 V27G probably damaging Het
Tmprss4 C A 9: 45,173,962 V398L probably benign Het
Trip6 T C 5: 137,312,172 D270G probably damaging Het
Uba5 T G 9: 104,049,298 N355T probably benign Het
Ubr5 A G 15: 38,006,517 Y1171H probably benign Het
Uhrf1bp1 T C 17: 27,885,018 L464P possibly damaging Het
Vmn2r57 A G 7: 41,400,240 I695T probably benign Het
Vmn2r68 T A 7: 85,221,991 I695L probably damaging Het
Vmn2r79 T A 7: 87,001,969 M192K probably damaging Het
Vps16 G T 2: 130,443,368 E782* probably null Het
Zfp783 A G 6: 47,946,803 noncoding transcript Het
Other mutations in Gimap1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01981:Gimap1 APN 6 48743324 missense probably damaging 0.99
Lien UTSW 6 48743356 makesense probably null
vonnegut UTSW 6 48743098 missense probably damaging 1.00
R0555:Gimap1 UTSW 6 48741429 splice site probably benign
R0638:Gimap1 UTSW 6 48741425 splice site probably benign
R1255:Gimap1 UTSW 6 48743006 missense probably benign 0.29
R4043:Gimap1 UTSW 6 48743242 missense probably damaging 0.99
R6076:Gimap1 UTSW 6 48742587 nonsense probably null
R6372:Gimap1 UTSW 6 48743356 makesense probably null
Z1176:Gimap1 UTSW 6 48743249 missense probably damaging 1.00
Z1176:Gimap1 UTSW 6 48743356 makesense probably null
Predicted Primers PCR Primer
(F):5'- ACTCCCTGCAGGATTATGTGC -3'
(R):5'- CCCTTTCTGTAGAACAGCAGG -3'

Sequencing Primer
(F):5'- CCTGCAGGATTATGTGCACTGC -3'
(R):5'- CCTTTCTGTAGAACAGCAGGTAGATC -3'
Posted On 2016-07-06