Incidental Mutation 'R7603:H2-Q7'
ID |
588138 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
H2-Q7
|
Ensembl Gene |
ENSMUSG00000060550 |
Gene Name |
histocompatibility 2, Q region locus 7 |
Synonyms |
Qa7, Ped, H-2Q7, Qa-7 |
MMRRC Submission |
045713-MU
|
Accession Numbers |
|
Essential gene? |
Possibly non essential
(E-score: 0.336)
|
Stock # |
R7603 (G1)
|
Quality Score |
136.008 |
Status
|
Validated
|
Chromosome |
17 |
Chromosomal Location |
35658131-35662749 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to C
at 35658939 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Leucine to Proline
at position 130
(L130P)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000071843
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000071951]
[ENSMUST00000076256]
[ENSMUST00000078205]
[ENSMUST00000116598]
|
AlphaFold |
P14429 |
PDB Structure |
crystal structure of the non-classical MHC class Ib Qa-2 complexed with a self peptide [X-RAY DIFFRACTION]
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000071951
AA Change: L130P
PolyPhen 2
Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
|
SMART Domains |
Protein: ENSMUSP00000071843 Gene: ENSMUSG00000060550 AA Change: L130P
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
21 |
N/A |
INTRINSIC |
Pfam:MHC_I
|
22 |
200 |
3e-97 |
PFAM |
IGc1
|
219 |
290 |
7.68e-23 |
SMART |
transmembrane domain
|
308 |
330 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000076256
AA Change: L130P
PolyPhen 2
Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
|
SMART Domains |
Protein: ENSMUSP00000075606 Gene: ENSMUSG00000060550 AA Change: L130P
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
21 |
N/A |
INTRINSIC |
Pfam:MHC_I
|
22 |
200 |
3.3e-98 |
PFAM |
IGc1
|
219 |
290 |
7.68e-23 |
SMART |
low complexity region
|
310 |
325 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000078205
AA Change: L130P
PolyPhen 2
Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
|
SMART Domains |
Protein: ENSMUSP00000077335 Gene: ENSMUSG00000060550 AA Change: L130P
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
21 |
N/A |
INTRINSIC |
Pfam:MHC_I
|
22 |
200 |
1.9e-97 |
PFAM |
IGc1
|
219 |
290 |
7.68e-23 |
SMART |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000116598
AA Change: L130P
PolyPhen 2
Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
|
SMART Domains |
Protein: ENSMUSP00000112297 Gene: ENSMUSG00000060550 AA Change: L130P
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
21 |
N/A |
INTRINSIC |
Pfam:MHC_I
|
22 |
200 |
8.5e-98 |
PFAM |
|
Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.7%
- 20x: 98.9%
|
Validation Efficiency |
98% (47/48) |
MGI Phenotype |
PHENOTYPE: This locus controls a widely distributed lymphocyte antigen recognized by monoclonal antibody, serology or CTL assay. Using all assays, antigen is present (allele a) in C57BL/6, DBA/1, DBA/2 and SWR and absent (allele b) in AKR, C3H and BALB/c. Other strain allele typings were assay-dependent. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 47 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Abca6 |
T |
C |
11: 110,071,084 (GRCm39) |
K1536E |
possibly damaging |
Het |
Abhd16a |
T |
A |
17: 35,320,936 (GRCm39) |
|
probably null |
Het |
Actrt3 |
C |
T |
3: 30,652,696 (GRCm39) |
A133T |
probably benign |
Het |
Adcy10 |
C |
T |
1: 165,391,806 (GRCm39) |
R1329W |
probably damaging |
Het |
Apol7b |
T |
C |
15: 77,307,656 (GRCm39) |
M280V |
possibly damaging |
Het |
Canx |
A |
T |
11: 50,202,455 (GRCm39) |
D50E |
probably benign |
Het |
Csmd1 |
A |
T |
8: 16,338,696 (GRCm39) |
D470E |
probably damaging |
Het |
Cyp2c23 |
C |
T |
19: 44,003,369 (GRCm39) |
D269N |
probably damaging |
Het |
Ddah1 |
T |
C |
3: 145,464,774 (GRCm39) |
V53A |
probably benign |
Het |
Epha7 |
C |
T |
4: 28,871,937 (GRCm39) |
S422L |
probably benign |
Het |
Fastkd5 |
A |
G |
2: 130,456,961 (GRCm39) |
V543A |
possibly damaging |
Het |
Fggy |
G |
A |
4: 95,657,743 (GRCm39) |
G295R |
probably damaging |
Het |
Frs2 |
T |
C |
10: 116,909,968 (GRCm39) |
T465A |
probably benign |
Het |
Glipr1 |
A |
T |
10: 111,824,737 (GRCm39) |
N156K |
probably benign |
Het |
Gnpnat1 |
C |
T |
14: 45,622,074 (GRCm39) |
V40I |
probably benign |
Het |
Herc1 |
T |
A |
9: 66,358,665 (GRCm39) |
L86* |
probably null |
Het |
Hspg2 |
T |
C |
4: 137,275,679 (GRCm39) |
L2778P |
probably damaging |
Het |
Hspg2 |
T |
A |
4: 137,284,503 (GRCm39) |
I3487N |
possibly damaging |
Het |
Htra4 |
T |
G |
8: 25,515,716 (GRCm39) |
I441L |
probably benign |
Het |
Ints7 |
A |
T |
1: 191,328,336 (GRCm39) |
H203L |
probably damaging |
Het |
Lama2 |
T |
C |
10: 27,142,676 (GRCm39) |
T601A |
possibly damaging |
Het |
Lin7b |
T |
C |
7: 45,017,856 (GRCm39) |
|
probably benign |
Het |
Lmbr1l |
G |
A |
15: 98,806,572 (GRCm39) |
Q280* |
probably null |
Het |
Lpin3 |
G |
T |
2: 160,745,674 (GRCm39) |
|
probably null |
Het |
Map1lc3b |
A |
T |
8: 122,320,268 (GRCm39) |
H27L |
possibly damaging |
Het |
Mfsd14a |
C |
A |
3: 116,427,532 (GRCm39) |
V369F |
probably damaging |
Het |
Ndufa12 |
C |
T |
10: 94,056,641 (GRCm39) |
A123V |
probably benign |
Het |
Nek9 |
A |
G |
12: 85,350,288 (GRCm39) |
F929L |
probably benign |
Het |
Nup210 |
A |
T |
6: 91,053,679 (GRCm39) |
D279E |
probably benign |
Het |
Or52m2 |
A |
G |
7: 102,264,145 (GRCm39) |
V17A |
probably benign |
Het |
Parp1 |
T |
C |
1: 180,427,777 (GRCm39) |
|
probably null |
Het |
Phc3 |
T |
C |
3: 30,961,601 (GRCm39) |
I944V |
probably damaging |
Het |
Phf20 |
C |
T |
2: 156,144,771 (GRCm39) |
A793V |
probably benign |
Het |
Phf21a |
A |
C |
2: 92,187,352 (GRCm39) |
R540S |
probably benign |
Het |
Pogk |
A |
G |
1: 166,229,480 (GRCm39) |
C124R |
probably benign |
Het |
Rif1 |
C |
T |
2: 51,966,187 (GRCm39) |
S93L |
probably damaging |
Het |
Sanbr |
T |
C |
11: 23,516,191 (GRCm39) |
T709A |
probably benign |
Het |
Sele |
A |
G |
1: 163,877,084 (GRCm39) |
E120G |
probably damaging |
Het |
Slc4a1ap |
T |
C |
5: 31,703,539 (GRCm39) |
L49P |
|
Het |
Snap47 |
T |
C |
11: 59,319,373 (GRCm39) |
D255G |
probably damaging |
Het |
Tcstv3 |
T |
C |
13: 120,779,146 (GRCm39) |
V15A |
probably damaging |
Het |
Tmcc1 |
A |
T |
6: 116,020,092 (GRCm39) |
Y453* |
probably null |
Het |
Tpsg1 |
G |
T |
17: 25,592,184 (GRCm39) |
G86V |
probably damaging |
Het |
Urb1 |
CACTTAC |
CAC |
16: 90,569,461 (GRCm39) |
|
probably benign |
Het |
Usp20 |
T |
A |
2: 30,901,486 (GRCm39) |
V459E |
probably damaging |
Het |
Vmn1r202 |
A |
T |
13: 22,685,790 (GRCm39) |
L209Q |
probably damaging |
Het |
Vps13b |
T |
C |
15: 35,576,585 (GRCm39) |
S998P |
probably damaging |
Het |
|
Other mutations in H2-Q7 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
R0735:H2-Q7
|
UTSW |
17 |
35,659,162 (GRCm39) |
critical splice donor site |
probably null |
|
R0839:H2-Q7
|
UTSW |
17 |
35,658,688 (GRCm39) |
missense |
probably damaging |
1.00 |
R1737:H2-Q7
|
UTSW |
17 |
35,658,602 (GRCm39) |
missense |
probably damaging |
1.00 |
R1831:H2-Q7
|
UTSW |
17 |
35,658,675 (GRCm39) |
missense |
probably benign |
0.00 |
R1832:H2-Q7
|
UTSW |
17 |
35,658,675 (GRCm39) |
missense |
probably benign |
0.00 |
R1833:H2-Q7
|
UTSW |
17 |
35,658,675 (GRCm39) |
missense |
probably benign |
0.00 |
R2047:H2-Q7
|
UTSW |
17 |
35,659,123 (GRCm39) |
missense |
probably damaging |
1.00 |
R4498:H2-Q7
|
UTSW |
17 |
35,658,506 (GRCm39) |
missense |
probably damaging |
1.00 |
R4657:H2-Q7
|
UTSW |
17 |
35,661,735 (GRCm39) |
missense |
possibly damaging |
0.86 |
R4784:H2-Q7
|
UTSW |
17 |
35,658,914 (GRCm39) |
missense |
probably damaging |
1.00 |
R5387:H2-Q7
|
UTSW |
17 |
35,658,518 (GRCm39) |
missense |
probably damaging |
1.00 |
R5499:H2-Q7
|
UTSW |
17 |
35,658,916 (GRCm39) |
nonsense |
probably null |
|
R6410:H2-Q7
|
UTSW |
17 |
35,659,152 (GRCm39) |
missense |
probably benign |
0.13 |
R6457:H2-Q7
|
UTSW |
17 |
35,658,655 (GRCm39) |
missense |
probably damaging |
1.00 |
R6720:H2-Q7
|
UTSW |
17 |
35,661,654 (GRCm39) |
missense |
probably benign |
0.05 |
R6943:H2-Q7
|
UTSW |
17 |
35,658,560 (GRCm39) |
missense |
probably benign |
0.30 |
R7069:H2-Q7
|
UTSW |
17 |
35,659,007 (GRCm39) |
missense |
probably damaging |
0.98 |
R7086:H2-Q7
|
UTSW |
17 |
35,658,461 (GRCm39) |
missense |
probably damaging |
1.00 |
R7303:H2-Q7
|
UTSW |
17 |
35,659,037 (GRCm39) |
missense |
probably benign |
0.13 |
R7520:H2-Q7
|
UTSW |
17 |
35,661,686 (GRCm39) |
missense |
probably benign |
0.04 |
R7747:H2-Q7
|
UTSW |
17 |
35,659,037 (GRCm39) |
missense |
probably benign |
0.13 |
R8169:H2-Q7
|
UTSW |
17 |
35,658,910 (GRCm39) |
nonsense |
probably null |
|
Z1177:H2-Q7
|
UTSW |
17 |
35,661,476 (GRCm39) |
missense |
probably damaging |
0.99 |
Z1177:H2-Q7
|
UTSW |
17 |
35,658,138 (GRCm39) |
start gained |
probably benign |
|
|
Predicted Primers |
PCR Primer
(F):5'- AAAGTCCGAGTTTCAGGAGCAG -3'
(R):5'- TCTTCTTCCCCAGGACTGAG -3'
Sequencing Primer
(F):5'- GTTTCAGGAGCAGAACTGACCC -3'
(R):5'- TTCCCGAGCTGCAGGTATCTG -3'
|
Posted On |
2019-10-24 |