Mutagenetix > Incidental Mutation

Incidental Mutation 'R8158:Zcchc4'

633354

Institutional Source

Beutler Lab

Gene Symbol

Zcchc4

Ensembl Gene

ENSMUSG00000029179

Gene Name

zinc finger, CCHC domain containing 4

Synonyms

4930449I23Rik

MMRRC Submission

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.129) question?

Stock #

R8158 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

52775409-52824665 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 52815918 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Histidine at position 375 (Y375H)

Ref Sequence

ENSEMBL: ENSMUSP00000031077 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000031077] [ENSMUST00000113904]

AlphaFold

Q8BKW4

Predicted Effect

probably damaging
Transcript: ENSMUST00000031077
AA Change: Y375H

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000031077
Gene: ENSMUSG00000029179
AA Change: Y375H

Domain	Start	End	E-Value	Type
Pfam:zf-GRF	37	81	2.9e-19	PFAM
Pfam:N6-adenineMlase	168	337	5.1e-11	PFAM
ZnF_C2HC	442	458	1.27e-2	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000113904
AA Change: Y375H

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000109537
Gene: ENSMUSG00000029179
AA Change: Y375H

Domain	Start	End	E-Value	Type
Pfam:zf-GRF	37	81	2.4e-17	PFAM
Pfam:N6-adenineMlase	168	338	7.1e-11	PFAM
ZnF_C2HC	442	458	1.27e-2	SMART
low complexity region	464	482	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.5%
20x: 98.3%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700016D06Rik	T	A	8: 11,665,056	D46V	probably damaging	Het
Abl2	T	A	1: 156,642,069	S968T	probably benign	Het
Adcy8	T	C	15: 64,783,806	D608G	probably benign	Het
Adgb	C	T	10: 10,378,734	V1162M	probably benign	Het
Agrn	A	G	4: 156,173,889	V1040A	probably benign	Het
Amer3	A	T	1: 34,587,660	T327S	possibly damaging	Het
Apaf1	C	T	10: 91,059,658	C426Y	probably benign	Het
Bsn	T	C	9: 108,110,033	D2840G	unknown	Het
Camsap1	A	T	2: 25,944,428	C406*	probably null	Het
Cbr2	A	T	11: 120,730,297	M158K	probably damaging	Het
Ccdc105	G	C	10: 78,748,675	Q338E	probably benign	Het
Cgrrf1	T	C	14: 46,853,735	S239P	probably benign	Het
Clnk	C	A	5: 38,794,911		probably null	Het
Csad	T	C	15: 102,177,762	M445V	probably damaging	Het
Dnajb7	T	A	15: 81,407,399	N246Y	probably damaging	Het
Dok6	T	C	18: 89,473,947	I169V	probably benign	Het
Hist1h2bm	T	C	13: 21,722,461	Y122H	probably benign	Het
Il1f10	T	G	2: 24,291,255	I11R	possibly damaging	Het
Irs1	C	T	1: 82,289,533	V321M	probably damaging	Het
Itga9	T	C	9: 118,877,143	F938L	probably damaging	Het
Kif7	T	C	7: 79,704,694	D781G	probably damaging	Het
Klhl41	A	T	2: 69,671,161	N322I	probably damaging	Het
Krtap31-1	T	G	11: 99,908,075	C35G	possibly damaging	Het
Lsm11	A	T	11: 45,933,997	D234E	probably benign	Het
Med6	T	C	12: 81,573,903	K223R	probably benign	Het
Mfsd4b2	G	A	10: 39,922,068	T97I	probably benign	Het
Mrgpra1	A	T	7: 47,335,456	C158*	probably null	Het
Nr2e1	T	C	10: 42,582,885	T8A	probably benign	Het
Oas2	T	C	5: 120,749,773	M1V	probably null	Het
Olfr1048	T	C	2: 86,236,160	Y218C	probably damaging	Het
Olfr1132	T	A	2: 87,634,889	N286I	probably damaging	Het
Olfr307	T	A	7: 86,335,677	I240F	probably benign	Het
Olfr393	T	A	11: 73,847,871	M85L	probably benign	Het
Olfr60	T	C	7: 140,345,249	I247V	probably benign	Het
Otof	C	T	5: 30,380,194	G1257D	probably benign	Het
Phf2	T	C	13: 48,817,760	T479A	probably benign	Het
Pik3c2a	T	C	7: 116,342,997	N1516S	probably benign	Het
Qrich1	C	A	9: 108,556,037	T622K	probably damaging	Het
Rasip1	A	G	7: 45,632,519	K482R	probably damaging	Het
Rgl2	T	C	17: 33,936,944	F698L	probably benign	Het
Scarb1	T	C	5: 125,303,137	D124G	probably benign	Het
Sclt1	A	G	3: 41,671,482	I350T	probably benign	Het
Sec23ip	T	G	7: 128,767,640	V696G	probably damaging	Het
Serpina1e	G	T	12: 103,951,095	T105K	probably benign	Het
Sin3a	A	G	9: 57,113,544		probably null	Het
Slc34a2	A	G	5: 53,060,840	T154A	probably damaging	Het
Slc9a3	T	C	13: 74,155,122	L178P	probably damaging	Het
Smarca2	A	C	19: 26,682,048	I913L	probably benign	Het
Tcea3	G	A	4: 136,273,716		probably null	Het
Tmcc1	T	A	6: 116,043,474	H339L		Het
Trpm2	G	T	10: 77,947,897	H247Q	probably damaging	Het
Tyr	T	A	7: 87,472,516	D356V	probably damaging	Het
Vmn2r54	A	T	7: 12,615,961	C565S	probably damaging	Het
Vmn2r82	A	C	10: 79,377,802	N74T	probably benign	Het
Zfhx3	T	A	8: 108,948,721	D2134E	possibly damaging	Het
Zfhx4	T	A	3: 5,398,950	Y1414*	probably null	Het
Zfp282	A	T	6: 47,890,692	E267D	possibly damaging	Het
Zfp442	A	T	2: 150,409,176	C269S	possibly damaging	Het
Zp3	T	A	5: 135,985,564	S246T	probably benign	Het

Other mutations in Zcchc4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00587:Zcchc4	APN	5	52816169	missense	probably benign	0.05
IGL00953:Zcchc4	APN	5	52808296	missense	probably damaging	1.00
IGL01860:Zcchc4	APN	5	52808356	missense	probably damaging	1.00
IGL02248:Zcchc4	APN	5	52796076	missense	probably damaging	1.00
IGL02536:Zcchc4	APN	5	52808316	missense	probably damaging	1.00
R0060:Zcchc4	UTSW	5	52807078	missense	possibly damaging	0.67
R0060:Zcchc4	UTSW	5	52807078	missense	possibly damaging	0.67
R0573:Zcchc4	UTSW	5	52795979	missense	probably damaging	1.00
R0634:Zcchc4	UTSW	5	52783208	missense	probably benign	0.15
R1353:Zcchc4	UTSW	5	52807077	missense	probably benign	0.03
R1791:Zcchc4	UTSW	5	52796590	missense	probably damaging	1.00
R1854:Zcchc4	UTSW	5	52815826	missense	probably damaging	1.00
R2108:Zcchc4	UTSW	5	52796132	missense	probably damaging	0.99
R2696:Zcchc4	UTSW	5	52796231	missense	probably damaging	1.00
R2991:Zcchc4	UTSW	5	52804438	missense	probably damaging	1.00
R3894:Zcchc4	UTSW	5	52784100	missense	probably damaging	1.00
R4523:Zcchc4	UTSW	5	52784067	missense	probably damaging	1.00
R4672:Zcchc4	UTSW	5	52796605	missense	probably benign	0.00
R4772:Zcchc4	UTSW	5	52796207	missense	possibly damaging	0.83
R4905:Zcchc4	UTSW	5	52796650	missense	probably damaging	1.00
R4954:Zcchc4	UTSW	5	52819217	missense	probably damaging	1.00
R5093:Zcchc4	UTSW	5	52796610	missense	probably benign	0.38
R5371:Zcchc4	UTSW	5	52785170	missense	probably benign	0.19
R5401:Zcchc4	UTSW	5	52807077	missense	probably benign	0.03
R5755:Zcchc4	UTSW	5	52816169	missense	probably benign	0.00
R6110:Zcchc4	UTSW	5	52796144	missense	possibly damaging	0.95
R6244:Zcchc4	UTSW	5	52783161	missense	probably benign	0.00
R6465:Zcchc4	UTSW	5	52819276	missense	probably benign	0.03
R6906:Zcchc4	UTSW	5	52823634	missense	possibly damaging	0.66
R7019:Zcchc4	UTSW	5	52784033	missense	probably benign	0.00
R7363:Zcchc4	UTSW	5	52785168	missense	possibly damaging	0.88
R7643:Zcchc4	UTSW	5	52808293	missense	possibly damaging	0.85
R8097:Zcchc4	UTSW	5	52795991	missense	probably benign	0.34
R8372:Zcchc4	UTSW	5	52796164	missense	probably damaging	1.00
R8545:Zcchc4	UTSW	5	52819399	intron	probably benign
R8755:Zcchc4	UTSW	5	52819382	missense	unknown
R9414:Zcchc4	UTSW	5	52796622	missense	probably benign	0.00
R9530:Zcchc4	UTSW	5	52796226	frame shift	probably null

Predicted Primers

PCR Primer
(F):5'- TTGGTTAAAGGAGCTTAGCGAATG -3'
(R):5'- TGAGCCGCAAGTGTTCATTG -3'

Sequencing Primer
(F):5'- AGGAGCTTAGCGAATGTTGACTC -3'
(R):5'- CCGCAAGTGTTCATTGAGATTCAC -3'

Posted On

2020-06-30