Mutagenetix > Incidental Mutation

Incidental Mutation 'R1874:Dgkq'

211023

Institutional Source

Beutler Lab

Gene Symbol

Dgkq

Ensembl Gene

ENSMUSG00000004815

Gene Name

diacylglycerol kinase, theta

Synonyms

110kDa, DAGK7, Dagk4, Dgkd, Dgk theta

MMRRC Submission

039896-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1874 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

108646693-108669672 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 108660595 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Leucine at position 34 (R34L)

Ref Sequence

ENSEMBL: ENSMUSP00000057859 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000053913] [ENSMUST00000071650] [ENSMUST00000132179] [ENSMUST00000132708] [ENSMUST00000153238]

AlphaFold

Q6P5E8

Predicted Effect

probably benign
Transcript: ENSMUST00000053913
AA Change: R34L

PolyPhen 2 Score 0.073 (Sensitivity: 0.93; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000057859
Gene: ENSMUSG00000004815
AA Change: R34L

Domain	Start	End	E-Value	Type
C1	55	102	3.22e-14	SMART
C1	114	162	1.73e-2	SMART
C1	178	228	1.58e-13	SMART
low complexity region	267	275	N/A	INTRINSIC
RA	387	486	2.08e-20	SMART
DAGKc	580	707	4.79e-63	SMART
DAGKa	733	885	7e-88	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000071650

SMART Domains

Protein: ENSMUSP00000071577
Gene: ENSMUSG00000033540

Domain	Start	End	E-Value	Type
Pfam:Glyco_hydro_39	22	542	1.4e-223	PFAM
SCOP:d1bpv__	546	643	3e-8	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000132179
AA Change: R34L

PolyPhen 2 Score 0.039 (Sensitivity: 0.94; Specificity: 0.83)

SMART Domains

Protein: ENSMUSP00000118466
Gene: ENSMUSG00000004815
AA Change: R34L

Domain	Start	End	E-Value	Type
C1	55	102	3.22e-14	SMART
Blast:C1	114	144	1e-12	BLAST
low complexity region	156	169	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000132708

SMART Domains

Protein: ENSMUSP00000122837
Gene: ENSMUSG00000004815

Domain	Start	End	E-Value	Type
Blast:C1	26	56	2e-13	BLAST
low complexity region	68	81	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000139598

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000144624

Predicted Effect

probably benign
Transcript: ENSMUST00000153238
AA Change: R34L

PolyPhen 2 Score 0.039 (Sensitivity: 0.94; Specificity: 0.83)

SMART Domains

Protein: ENSMUSP00000118065
Gene: ENSMUSG00000004815
AA Change: R34L

Domain	Start	End	E-Value	Type
C1	55	102	3.22e-14	SMART
Blast:C1	114	144	1e-12	BLAST
low complexity region	156	169	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000153365

Meta Mutation Damage Score

0.0716

Coding Region Coverage

1x: 97.5%
3x: 97.0%
10x: 95.8%
20x: 94.1%

Validation Efficiency

96% (105/109)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene contains three cysteine-rich domains, a proline-rich region, and a pleckstrin homology domain with an overlapping Ras-associating domain. It is localized in the speckle domains of the nucleus, and mediates the regeneration of phosphatidylinositol (PI) from diacylglycerol in the PI-cycle during cell signal transduction. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 104 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
AA986860	A	G	1: 130,742,691 (GRCm38)	S217G	probably benign	Het
Adrb3	C	A	8: 27,227,563 (GRCm38)	R286L	probably damaging	Het
Akap11	T	A	14: 78,511,866 (GRCm38)	D1027V	probably benign	Het
Ank3	A	T	10: 69,898,083 (GRCm38)	I726F	probably damaging	Het
Ankmy2	T	A	12: 36,165,931 (GRCm38)	D43E	possibly damaging	Het
Ankrd34b	A	G	13: 92,439,556 (GRCm38)	D432G	probably damaging	Het
Ano3	A	C	2: 110,884,872 (GRCm38)	S74A	probably benign	Het
B4galnt4	T	A	7: 141,070,526 (GRCm38)	S769T	probably damaging	Het
Bicral	T	A	17: 46,825,178 (GRCm38)	T369S	probably benign	Het
Blm	A	G	7: 80,497,418 (GRCm38)	L738P	probably damaging	Het
Bpifb3	A	G	2: 153,925,840 (GRCm38)	T278A	probably benign	Het
Bpifb5	A	G	2: 154,227,202 (GRCm38)		probably benign	Het
Brd8	G	C	18: 34,610,474 (GRCm38)	P266R	probably damaging	Het
Btaf1	A	T	19: 36,980,583 (GRCm38)	M587L	probably benign	Het
Casz1	C	G	4: 148,943,211 (GRCm38)	T1015S	probably damaging	Het
Cdh23	A	G	10: 60,436,818 (GRCm38)	I524T	possibly damaging	Het
Celsr3	T	C	9: 108,835,838 (GRCm38)	V1825A	probably benign	Het
Cenpf	A	G	1: 189,683,816 (GRCm38)	L104P	probably damaging	Het
Clasp1	G	T	1: 118,600,585 (GRCm38)		probably null	Het
Coprs	A	G	8: 13,885,112 (GRCm38)	W148R	probably damaging	Het
Cpne1	A	G	2: 156,078,382 (GRCm38)	S168P	probably damaging	Het
Cpxm2	T	C	7: 132,059,834 (GRCm38)	Y408C	probably damaging	Het
Ctnna3	A	G	10: 63,504,107 (GRCm38)	E24G	possibly damaging	Het
Cubn	T	A	2: 13,323,002 (GRCm38)	S2671C	probably damaging	Het
Cyp4f39	T	A	17: 32,483,324 (GRCm38)	F265Y	probably damaging	Het
Dnajc7	C	T	11: 100,599,313 (GRCm38)		probably benign	Het
Eml6	T	G	11: 29,831,136 (GRCm38)	D632A	probably damaging	Het
Fbxl18	G	A	5: 142,886,223 (GRCm38)	A419V	probably damaging	Het
Fbxw22	A	T	9: 109,385,111 (GRCm38)	C212*	probably null	Het
Ffar2	A	G	7: 30,819,414 (GRCm38)		probably null	Het
Fga	A	T	3: 83,032,721 (GRCm38)	T561S	probably damaging	Het
Fry	A	G	5: 150,345,921 (GRCm38)	Y159C	probably damaging	Het
Gal3st1	A	G	11: 3,998,231 (GRCm38)	Y146C	probably damaging	Het
Gapvd1	A	T	2: 34,706,021 (GRCm38)	H788Q	probably damaging	Het
Gimap7	G	A	6: 48,723,515 (GRCm38)	V12I	possibly damaging	Het
Gli2	C	A	1: 119,002,049 (GRCm38)	A43S	possibly damaging	Het
Gm15446	T	C	5: 109,942,553 (GRCm38)	F224L	probably damaging	Het
Gm21738	C	T	14: 19,418,824 (GRCm38)	V35I	possibly damaging	Het
Grhl1	T	C	12: 24,586,156 (GRCm38)		probably benign	Het
Grk6	T	C	13: 55,450,273 (GRCm38)	Y53H	probably damaging	Het
Hcar1	C	T	5: 123,879,265 (GRCm38)	R121K	probably damaging	Het
Hmcn1	A	C	1: 150,720,695 (GRCm38)	S1797A	probably damaging	Het
Hsd17b7	A	T	1: 169,955,993 (GRCm38)	L282Q	possibly damaging	Het
Irs1	TTCTCTGAGTGGCCACAGCGTCT	TTCT	1: 82,289,853 (GRCm38)		probably null	Het
Kif1b	C	T	4: 149,187,632 (GRCm38)	V1571I	probably benign	Het
Lpl	T	A	8: 68,896,619 (GRCm38)	C266S	probably damaging	Het
Mag	G	A	7: 30,909,051 (GRCm38)	H213Y	probably benign	Het
Mansc4	T	G	6: 147,075,190 (GRCm38)	R309S	probably benign	Het
Mlh3	A	G	12: 85,237,513 (GRCm38)		probably null	Het
Mndal	G	A	1: 173,860,367 (GRCm38)		probably benign	Het
Mrgpra2b	T	A	7: 47,463,994 (GRCm38)	E330V	probably damaging	Het
Myh3	A	G	11: 67,093,179 (GRCm38)	I990V	probably benign	Het
Myoz2	A	T	3: 123,026,116 (GRCm38)	S65T	probably damaging	Het
Naa16	T	C	14: 79,355,743 (GRCm38)	E463G	possibly damaging	Het
Nadsyn1	A	G	7: 143,797,844 (GRCm38)	F684S	probably damaging	Het
Notch1	T	C	2: 26,481,579 (GRCm38)	E286G	possibly damaging	Het
Nynrin	A	T	14: 55,863,493 (GRCm38)	I247L	probably benign	Het
Oprm1	A	G	10: 6,789,035 (GRCm38)	H54R	probably benign	Het
Or10g6	T	A	9: 40,022,855 (GRCm38)	I154N	possibly damaging	Het
Or2n1d	C	T	17: 38,335,969 (GRCm38)	P271S	probably damaging	Het
Or51a43	T	C	7: 104,068,129 (GRCm38)	I301V	probably null	Het
P4hb	C	T	11: 120,562,166 (GRCm38)	D483N	probably benign	Het
Pak1	T	C	7: 97,871,580 (GRCm38)	S149P	probably benign	Het
Pars2	T	C	4: 106,653,716 (GRCm38)	F232L	possibly damaging	Het
Pih1d2	A	G	9: 50,620,945 (GRCm38)	M88V	possibly damaging	Het
Pms1	A	T	1: 53,207,233 (GRCm38)	N382K	probably benign	Het
Pnliprp2	G	T	19: 58,763,389 (GRCm38)	V189L	probably benign	Het
Pole	G	A	5: 110,323,664 (GRCm38)	V1425M	possibly damaging	Het
Pot1b	T	A	17: 55,654,805 (GRCm38)	Q591L	probably benign	Het
Ppp1r9a	C	T	6: 4,906,348 (GRCm38)	T301M	possibly damaging	Het
Psg21	T	C	7: 18,650,816 (GRCm38)	E335G	probably benign	Het
Ptpru	T	A	4: 131,769,755 (GRCm38)	M1416L	probably benign	Het
Pxn	T	C	5: 115,544,990 (GRCm38)	V117A	probably damaging	Het
Qsox1	C	T	1: 155,812,639 (GRCm38)	R54H	possibly damaging	Het
Rad1	A	G	15: 10,488,006 (GRCm38)	E42G	probably damaging	Het
Rpp14	A	G	14: 8,090,145 (GRCm38)	Y23C	probably benign	Het
Sdk2	C	T	11: 113,834,956 (GRCm38)	V1156I	probably benign	Het
Serpina3j	G	T	12: 104,319,699 (GRCm38)	R371L	probably benign	Het
Serpinb9d	T	A	13: 33,197,963 (GRCm38)		probably null	Het
Sirt5	C	T	13: 43,370,791 (GRCm38)	S13F	possibly damaging	Het
Slc6a7	T	A	18: 61,001,398 (GRCm38)		probably benign	Het
Slx4	A	G	16: 3,986,848 (GRCm38)	S701P	probably benign	Het
Snx29	A	G	16: 11,367,681 (GRCm38)	T43A	probably benign	Het
Speg	T	C	1: 75,423,906 (GRCm38)	V2570A	probably benign	Het
Srrm4	T	A	5: 116,453,506 (GRCm38)		probably benign	Het
Stk32a	A	G	18: 43,261,316 (GRCm38)	Y110C	probably damaging	Het
Tbc1d31	G	A	15: 57,916,110 (GRCm38)	G73E	probably benign	Het
Thsd7a	A	T	6: 12,555,435 (GRCm38)	I150N	possibly damaging	Het
Tjp1	A	T	7: 65,319,253 (GRCm38)	D699E	probably damaging	Het
Tmem143	A	G	7: 45,916,564 (GRCm38)	D437G	possibly damaging	Het
Tmem45a2	A	G	16: 57,047,084 (GRCm38)	Y85H	possibly damaging	Het
Tmem45b	T	A	9: 31,429,087 (GRCm38)	T7S	probably damaging	Het
Tut4	T	A	4: 108,550,725 (GRCm38)	V1397D	probably damaging	Het
Ube4b	A	G	4: 149,347,971 (GRCm38)	L832P	probably damaging	Het
Ugp2	G	T	11: 21,329,048 (GRCm38)	F379L	probably damaging	Het
Ugt3a2	A	T	15: 9,365,351 (GRCm38)	D350V	probably damaging	Het
Vmn2r8	T	A	5: 108,802,418 (GRCm38)	T188S	possibly damaging	Het
Vwa7	C	G	17: 35,017,112 (GRCm38)	P14R	probably benign	Het
Vwc2	C	A	11: 11,261,495 (GRCm38)	T317K	probably damaging	Het
Vwf	A	T	6: 125,628,372 (GRCm38)	Q906L	probably benign	Het
Wdr49	A	G	3: 75,429,347 (GRCm38)	V351A	probably damaging	Het
Wdr7	A	G	18: 63,728,504 (GRCm38)	S196G	probably benign	Het
Xkr6	C	A	14: 63,798,296 (GRCm38)	A26E	unknown	Het
Zfp955b	T	C	17: 33,305,453 (GRCm38)	I47V	probably benign	Het

Other mutations in Dgkq

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00491:Dgkq	APN	5	108,654,582 (GRCm38)	missense	possibly damaging	0.72
IGL02364:Dgkq	APN	5	108,656,444 (GRCm38)	missense	probably benign	0.05
IGL02966:Dgkq	APN	5	108,656,421 (GRCm38)	splice site	probably null
IGL03297:Dgkq	APN	5	108,650,274 (GRCm38)	missense	probably damaging	1.00
R0179:Dgkq	UTSW	5	108,658,200 (GRCm38)	splice site	probably benign
R0194:Dgkq	UTSW	5	108,654,644 (GRCm38)	intron	probably benign
R0332:Dgkq	UTSW	5	108,655,099 (GRCm38)	splice site	probably benign
R0513:Dgkq	UTSW	5	108,656,495 (GRCm38)	missense	probably benign	0.02
R0525:Dgkq	UTSW	5	108,654,615 (GRCm38)	missense	probably damaging	1.00
R0673:Dgkq	UTSW	5	108,655,589 (GRCm38)	missense	probably damaging	0.97
R0801:Dgkq	UTSW	5	108,660,720 (GRCm38)	splice site	probably null
R0850:Dgkq	UTSW	5	108,654,578 (GRCm38)	missense	possibly damaging	0.82
R0944:Dgkq	UTSW	5	108,656,465 (GRCm38)	missense	probably damaging	1.00
R1069:Dgkq	UTSW	5	108,656,037 (GRCm38)	splice site	probably benign
R1411:Dgkq	UTSW	5	108,650,362 (GRCm38)	missense	probably damaging	1.00
R1488:Dgkq	UTSW	5	108,650,877 (GRCm38)	missense	probably damaging	1.00
R1858:Dgkq	UTSW	5	108,653,731 (GRCm38)	missense	probably benign	0.00
R2210:Dgkq	UTSW	5	108,660,523 (GRCm38)	missense	probably damaging	1.00
R4499:Dgkq	UTSW	5	108,649,661 (GRCm38)	missense	possibly damaging	0.54
R5061:Dgkq	UTSW	5	108,654,123 (GRCm38)	missense	probably benign	0.02
R5474:Dgkq	UTSW	5	108,649,143 (GRCm38)	critical splice donor site	probably null
R5481:Dgkq	UTSW	5	108,648,810 (GRCm38)	splice site	probably null
R5951:Dgkq	UTSW	5	108,654,370 (GRCm38)	missense	probably damaging	1.00
R6193:Dgkq	UTSW	5	108,655,500 (GRCm38)	nonsense	probably null
R6429:Dgkq	UTSW	5	108,653,708 (GRCm38)	missense	probably damaging	1.00
R6458:Dgkq	UTSW	5	108,654,376 (GRCm38)	missense	possibly damaging	0.93
R7388:Dgkq	UTSW	5	108,658,246 (GRCm38)	missense	probably damaging	0.99
R7398:Dgkq	UTSW	5	108,655,190 (GRCm38)	missense	possibly damaging	0.90
R8098:Dgkq	UTSW	5	108,652,468 (GRCm38)	missense	probably damaging	1.00
R8244:Dgkq	UTSW	5	108,648,712 (GRCm38)	makesense	probably null
R8956:Dgkq	UTSW	5	108,650,229 (GRCm38)	missense	probably benign	0.22
R9043:Dgkq	UTSW	5	108,653,195 (GRCm38)	missense	probably damaging	1.00
R9360:Dgkq	UTSW	5	108,650,603 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TCCTACTCAAACCAGAGTCTGTC -3'
(R):5'- TTAGGTAGCGCAGTCGGAAG -3'

Sequencing Primer
(F):5'- TCTCAAAGGTCAGGGCAGTGTC -3'
(R):5'- CTTTATCGTGCGCTTGGA -3'

Posted On

2014-06-30