Mutagenetix > Incidental Mutation

Incidental Mutation 'R9093:Rasef'

691124

Institutional Source

Beutler Lab

Gene Symbol

Rasef

Ensembl Gene

ENSMUSG00000043003

Gene Name

RAS and EF hand domain containing

Synonyms

RAB45

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.078) question?

Stock #

R9093 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

73632816-73709231 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 73698583 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 26 (D26G)

Ref Sequence

ENSEMBL: ENSMUSP00000062771 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000058292] [ENSMUST00000102837] [ENSMUST00000222414]

AlphaFold

Q5RI75

Predicted Effect

probably benign
Transcript: ENSMUST00000058292
AA Change: D26G

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)

SMART Domains

Protein: ENSMUSP00000062771
Gene: ENSMUSG00000043003
AA Change: D26G

Domain	Start	End	E-Value	Type
low complexity region	20	34	N/A	INTRINSIC
coiled coil region	55	251	N/A	INTRINSIC
RAB	429	598	4.94e-69	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000102837

SMART Domains

Protein: ENSMUSP00000099901
Gene: ENSMUSG00000043003

Domain	Start	End	E-Value	Type
coiled coil region	5	179	N/A	INTRINSIC
RAB	357	526	4.94e-69	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000222414

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.6%

Validation Efficiency

97% (76/78)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the Rab family of GTPases that are involved in regulation of membrane traffic. The encoded protein contains an N-terminal EF-hand domain, a coiled-coil motif and a C-terminal Rab domain. A potential role as tumor suppressor has been indicated for this gene. [provided by RefSeq, Nov 2012]

Allele List at MGI

Other mutations in this stock

Total: 78 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb11	A	T	2: 69,069,513 (GRCm39)	V1294E	probably damaging	Het
Ada	C	T	2: 163,577,308 (GRCm39)	G60D	probably benign	Het
Aff3	G	T	1: 38,291,738 (GRCm39)	R390S	possibly damaging	Het
Aldh3b3	T	A	19: 4,013,959 (GRCm39)	N53K	possibly damaging	Het
Ankrd36	G	A	11: 5,589,132 (GRCm39)	M410I	probably benign	Het
Ap2b1	T	A	11: 83,215,395 (GRCm39)	I113N	probably damaging	Het
Art5	G	T	7: 101,747,396 (GRCm39)	H128N	probably benign	Het
Calhm2	A	C	19: 47,121,599 (GRCm39)	L190R	probably benign	Het
Catsperg1	G	C	7: 28,884,152 (GRCm39)	T987R	probably damaging	Het
Cdh18	A	T	15: 23,474,064 (GRCm39)	I645F	probably damaging	Het
Cenpe	C	T	3: 134,945,641 (GRCm39)	Q1052*	probably null	Het
Cfap221	G	T	1: 119,863,856 (GRCm39)	Q563K	probably damaging	Het
Cfap54	T	A	10: 92,651,770 (GRCm39)	E3093D	probably benign	Het
Chd4	A	G	6: 125,090,974 (GRCm39)	M1186V	probably benign	Het
Chst15	A	T	7: 131,870,646 (GRCm39)		probably null	Het
Clca3a2	T	C	3: 144,781,481 (GRCm39)	T688A	probably benign	Het
Cmtm1	TCCGGGTACTGAAGGTCCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTGG	TCCGGGTACTGAAGGTCCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTGG	8: 105,036,334 (GRCm39)		probably null	Het
Cul1	T	A	6: 47,495,173 (GRCm39)	N518K	probably damaging	Het
E230025N22Rik	G	T	18: 36,821,952 (GRCm39)	L247I	possibly damaging	Het
Eno4	A	T	19: 58,941,600 (GRCm39)	K174*	probably null	Het
Enpp3	G	A	10: 24,671,702 (GRCm39)	P431S	probably benign	Het
Fbh1	T	A	2: 11,764,801 (GRCm39)	Q444H	probably damaging	Het
Fbxo31	G	A	8: 122,281,136 (GRCm39)	R337C	probably damaging	Het
Fbxw14	A	G	9: 109,105,250 (GRCm39)	I305T	probably benign	Het
Fhip1b	T	A	7: 105,034,599 (GRCm39)	T408S	probably damaging	Het
Gas2	T	A	7: 51,602,969 (GRCm39)	C216S	probably damaging	Het
Gjb3	GCCAGATGCGCCCA	GCCAGATGCGCCCAGATGCGCCCA	4: 127,220,458 (GRCm39)		probably null	Het
Glp2r	T	A	11: 67,621,459 (GRCm39)	R344*	probably null	Het
Gm17430	A	G	18: 9,726,640 (GRCm39)	Y11H	probably damaging	Het
Gyg1	T	A	3: 20,176,901 (GRCm39)	D363V	probably damaging	Het
H2bc18	G	A	3: 96,177,290 (GRCm39)	A75T	probably benign	Het
Hectd4	A	G	5: 121,411,677 (GRCm39)	N451S	probably benign	Het
Hif1a	T	C	12: 73,979,111 (GRCm39)	Y212H	probably benign	Het
Hoxd11	A	T	2: 74,514,482 (GRCm39)	*337C	probably null	Het
Kif24	A	G	4: 41,428,691 (GRCm39)	F90L	probably benign	Het
Klhl20	A	T	1: 160,923,231 (GRCm39)	C497*	probably null	Het
Loxl1	C	A	9: 58,219,224 (GRCm39)	A316S	probably benign	Het
Lrig3	C	T	10: 125,845,950 (GRCm39)	P793L	possibly damaging	Het
Macc1	A	G	12: 119,410,561 (GRCm39)	D443G	probably benign	Het
Maip1	A	T	1: 57,446,311 (GRCm39)	Y127F	possibly damaging	Het
Mrm2	A	T	5: 140,314,427 (GRCm39)	F136Y	probably benign	Het
Nasp	G	T	4: 116,468,017 (GRCm39)	L323I	probably benign	Het
Ndufb8	A	T	19: 44,538,823 (GRCm39)	L166Q	probably damaging	Het
Nid2	C	T	14: 19,858,009 (GRCm39)	T1274I		Het
Nup210	T	A	6: 91,066,872 (GRCm39)	T160S	probably benign	Het
Nutm2	A	G	13: 50,628,964 (GRCm39)	K676R	probably damaging	Het
Odad1	G	A	7: 45,596,965 (GRCm39)	V431I	possibly damaging	Het
Or10a3n	T	C	7: 108,493,609 (GRCm39)	R7G	probably benign	Het
Or2a20	A	G	6: 43,194,500 (GRCm39)	T218A	probably benign	Het
Or56b1b	A	T	7: 108,164,454 (GRCm39)	C183S	probably damaging	Het
Or5ak20	T	A	2: 85,183,852 (GRCm39)	R139S	probably benign	Het
Or7g33	A	G	9: 19,448,914 (GRCm39)	V104A	probably benign	Het
Or8b9	A	T	9: 37,766,294 (GRCm39)	Y60F	probably damaging	Het
Or9m1	A	T	2: 87,733,480 (GRCm39)	I180N	probably benign	Het
Pcdhga12	C	A	18: 37,899,931 (GRCm39)	N254K	possibly damaging	Het
Pm20d1	G	T	1: 131,743,753 (GRCm39)	V473F	probably benign	Het
Pou2af2	G	A	9: 51,201,516 (GRCm39)	P180L	possibly damaging	Het
Rab11fip1	A	G	8: 27,633,355 (GRCm39)	V596A	probably damaging	Het
Rapgef6	C	T	11: 54,487,912 (GRCm39)	Q13*	probably null	Het
Rbfox2	A	T	15: 77,190,658 (GRCm39)	V29E	probably benign	Het
Recql4	G	A	15: 76,589,685 (GRCm39)	P787S	unknown	Het
Rnf19a	A	C	15: 36,253,450 (GRCm39)		probably benign	Het
Rnf214	A	G	9: 45,811,054 (GRCm39)	I203T	probably damaging	Het
Rnmt	A	C	18: 68,451,146 (GRCm39)	E396D	probably benign	Het
Scn4a	G	A	11: 106,210,638 (GRCm39)	S1793L	probably benign	Het
Sdcbp	G	T	4: 6,386,709 (GRCm39)		probably null	Het
Slfn3	A	G	11: 83,103,948 (GRCm39)	N273S	probably damaging	Het
Slk	A	G	19: 47,603,883 (GRCm39)	D209G		Het
Tent5b	A	G	4: 133,214,352 (GRCm39)	T408A	probably damaging	Het
Tmem135	T	A	7: 88,797,204 (GRCm39)	M351L	probably benign	Het
Tmem64	A	G	4: 15,266,391 (GRCm39)	H147R	probably benign	Het
Tnfsf4	T	C	1: 161,244,629 (GRCm39)	L106P	probably damaging	Het
Tonsl	A	T	15: 76,515,270 (GRCm39)	C1039S	probably damaging	Het
Ube4a	A	T	9: 44,864,462 (GRCm39)	F44I	possibly damaging	Het
Vmn2r40	A	G	7: 8,911,172 (GRCm39)	L707P		Het
Vmn2r87	G	A	10: 130,308,165 (GRCm39)	T691I	probably benign	Het
Wbp11	A	T	6: 136,803,044 (GRCm39)	S7T	possibly damaging	Het
Zfp386	C	A	12: 116,023,878 (GRCm39)	S532*	probably null	Het

Other mutations in Rasef

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00430:Rasef	APN	4	73,689,662 (GRCm39)	nonsense	probably null
IGL01329:Rasef	APN	4	73,645,882 (GRCm39)	missense	probably damaging	1.00
IGL01517:Rasef	APN	4	73,688,059 (GRCm39)	missense	probably benign	0.03
IGL02465:Rasef	APN	4	73,652,725 (GRCm39)	missense	probably damaging	1.00
IGL02676:Rasef	APN	4	73,677,966 (GRCm39)	missense	possibly damaging	0.69
IGL03137:Rasef	APN	4	73,652,720 (GRCm39)	nonsense	probably null
IGL03403:Rasef	APN	4	73,652,771 (GRCm39)	missense	probably damaging	1.00
BB001:Rasef	UTSW	4	73,659,166 (GRCm39)	critical splice donor site	probably null
BB011:Rasef	UTSW	4	73,659,166 (GRCm39)	critical splice donor site	probably null
P0033:Rasef	UTSW	4	73,668,089 (GRCm39)	missense	probably benign	0.26
R0035:Rasef	UTSW	4	73,681,091 (GRCm39)	splice site	probably benign
R0035:Rasef	UTSW	4	73,681,091 (GRCm39)	splice site	probably benign
R0317:Rasef	UTSW	4	73,666,799 (GRCm39)	missense	probably damaging	1.00
R0686:Rasef	UTSW	4	73,652,771 (GRCm39)	missense	probably damaging	1.00
R0987:Rasef	UTSW	4	73,652,721 (GRCm39)	nonsense	probably null
R1115:Rasef	UTSW	4	73,666,841 (GRCm39)	missense	possibly damaging	0.85
R1511:Rasef	UTSW	4	73,653,985 (GRCm39)	missense	probably damaging	1.00
R1585:Rasef	UTSW	4	73,658,574 (GRCm39)	missense	probably damaging	1.00
R1646:Rasef	UTSW	4	73,652,786 (GRCm39)	missense	probably damaging	1.00
R1705:Rasef	UTSW	4	73,662,301 (GRCm39)	nonsense	probably null
R1918:Rasef	UTSW	4	73,662,351 (GRCm39)	missense	possibly damaging	0.94
R1919:Rasef	UTSW	4	73,662,351 (GRCm39)	missense	possibly damaging	0.94
R3819:Rasef	UTSW	4	73,677,942 (GRCm39)	missense	probably damaging	1.00
R3891:Rasef	UTSW	4	73,698,634 (GRCm39)	missense	probably benign	0.03
R3892:Rasef	UTSW	4	73,698,634 (GRCm39)	missense	probably benign	0.03
R4344:Rasef	UTSW	4	73,663,326 (GRCm39)	missense	probably damaging	1.00
R4491:Rasef	UTSW	4	73,652,740 (GRCm39)	missense	probably damaging	1.00
R4492:Rasef	UTSW	4	73,652,740 (GRCm39)	missense	probably damaging	1.00
R4594:Rasef	UTSW	4	73,698,626 (GRCm39)	missense	possibly damaging	0.47
R4915:Rasef	UTSW	4	73,649,696 (GRCm39)	missense	probably damaging	1.00
R5276:Rasef	UTSW	4	73,654,004 (GRCm39)	missense	probably null	1.00
R5359:Rasef	UTSW	4	73,689,565 (GRCm39)	missense	probably damaging	1.00
R5682:Rasef	UTSW	4	73,659,208 (GRCm39)	nonsense	probably null
R5693:Rasef	UTSW	4	73,688,076 (GRCm39)	missense	probably damaging	0.99
R6414:Rasef	UTSW	4	73,658,818 (GRCm39)	missense	probably benign	0.13
R6543:Rasef	UTSW	4	73,698,756 (GRCm39)	intron	probably benign
R6593:Rasef	UTSW	4	73,663,327 (GRCm39)	missense	probably damaging	1.00
R7078:Rasef	UTSW	4	73,698,626 (GRCm39)	missense	probably benign	0.01
R7083:Rasef	UTSW	4	73,709,221 (GRCm39)	missense	probably benign	0.26
R7106:Rasef	UTSW	4	73,645,864 (GRCm39)	missense	probably damaging	1.00
R7127:Rasef	UTSW	4	73,662,369 (GRCm39)	missense	probably damaging	1.00
R7329:Rasef	UTSW	4	73,662,374 (GRCm39)	missense	probably damaging	1.00
R7767:Rasef	UTSW	4	73,652,771 (GRCm39)	missense	probably damaging	1.00
R7891:Rasef	UTSW	4	73,709,201 (GRCm39)	missense	probably benign
R7891:Rasef	UTSW	4	73,677,935 (GRCm39)	missense	probably benign	0.00
R7924:Rasef	UTSW	4	73,659,166 (GRCm39)	critical splice donor site	probably null
R7997:Rasef	UTSW	4	73,658,799 (GRCm39)	missense	possibly damaging	0.78
R8554:Rasef	UTSW	4	73,645,844 (GRCm39)	missense	probably benign	0.03
R8832:Rasef	UTSW	4	73,698,558 (GRCm39)	intron	probably benign
R8850:Rasef	UTSW	4	73,645,840 (GRCm39)	missense	probably damaging	1.00
R8985:Rasef	UTSW	4	73,708,960 (GRCm39)	missense	possibly damaging	0.48
R9179:Rasef	UTSW	4	73,662,356 (GRCm39)	missense	probably damaging	0.97
R9199:Rasef	UTSW	4	73,658,625 (GRCm39)	missense	possibly damaging	0.88
R9300:Rasef	UTSW	4	73,659,393 (GRCm39)	missense	probably benign
R9310:Rasef	UTSW	4	73,653,956 (GRCm39)	critical splice donor site	probably null
R9415:Rasef	UTSW	4	73,645,882 (GRCm39)	missense	probably benign	0.00
R9482:Rasef	UTSW	4	73,708,933 (GRCm39)	missense	probably benign	0.00
R9719:Rasef	UTSW	4	73,688,102 (GRCm39)	missense	possibly damaging	0.62

Predicted Primers

PCR Primer
(F):5'- TAGCCACTATGCCAACCTGC -3'
(R):5'- CAAGGAAGTCATGCTAGTTGC -3'

Sequencing Primer
(F):5'- CCTGCATAACATTTGCAACCTTGAG -3'
(R):5'- GGAAGTCATGCTAGTTGCTTAAC -3'

Posted On

2021-12-30