Incidental Mutation 'R0927:Ubtd1'
ID 80577
Institutional Source Beutler Lab
Gene Symbol Ubtd1
Ensembl Gene ENSMUSG00000025171
Gene Name ubiquitin domain containing 1
Synonyms
MMRRC Submission 039074-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.156) question?
Stock # R0927 (G1)
Quality Score 218
Status Not validated
Chromosome 19
Chromosomal Location 41970202-42023082 bp(+) (GRCm39)
Type of Mutation nonsense
DNA Base Change (assembly) G to A at 42020460 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Tryptophan to Stop codon at position 68 (W68*)
Ref Sequence ENSEMBL: ENSMUSP00000026170 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000026170] [ENSMUST00000026172]
AlphaFold Q91WB7
Predicted Effect probably null
Transcript: ENSMUST00000026170
AA Change: W68*
SMART Domains Protein: ENSMUSP00000026170
Gene: ENSMUSG00000025171
AA Change: W68*

DomainStartEndE-ValueType
Pfam:UBD 25 129 2.9e-40 PFAM
UBQ 149 220 4.66e-5 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000026172
SMART Domains Protein: ENSMUSP00000026172
Gene: ENSMUSG00000025172

DomainStartEndE-ValueType
low complexity region 104 111 N/A INTRINSIC
ANK 149 178 5.24e-4 SMART
ANK 182 211 5.79e-6 SMART
ANK 215 244 1.33e-5 SMART
ANK 248 277 3.18e-3 SMART
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.7%
  • 10x: 97.0%
  • 20x: 93.7%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The degradation of many proteins is carried out by the ubiquitin pathway in which proteins are targeted for degradation by covalent conjugation of the polypeptide ubiquitin. This gene encodes a protein that belongs to the ubiquitin family of proteins. The encoded protein is thought to regulate E2 ubiquitin conjugating enzymes belonging to the UBE2D family. [provided by RefSeq, Mar 2014]
Allele List at MGI
Other mutations in this stock
Total: 55 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abcb8 T C 5: 24,607,317 (GRCm39) L363P probably damaging Het
Adam12 T A 7: 133,599,959 (GRCm39) H85L probably damaging Het
Adam34 A T 8: 44,104,621 (GRCm39) H341Q probably damaging Het
Adam34l A T 8: 44,078,160 (GRCm39) M688K probably benign Het
Adam7 A G 14: 68,754,133 (GRCm39) L322P probably damaging Het
Adcy5 T A 16: 34,976,613 (GRCm39) S49T probably benign Het
Arfgap2 T C 2: 91,104,150 (GRCm39) S374P probably benign Het
Arpp19 G A 9: 74,944,967 (GRCm39) probably benign Het
Baz1a T C 12: 54,941,773 (GRCm39) K1478E probably damaging Het
Cdc27 G T 11: 104,396,467 (GRCm39) A812E possibly damaging Het
Chtf8 G A 8: 107,612,150 (GRCm39) T263I probably damaging Het
Clcn6 T C 4: 148,113,849 (GRCm39) N70D probably benign Het
Cntnap5c A T 17: 58,349,553 (GRCm39) T289S possibly damaging Het
Dzip3 T C 16: 48,795,840 (GRCm39) N177S probably damaging Het
Edar G T 10: 58,465,313 (GRCm39) probably null Het
Enam T A 5: 88,641,919 (GRCm39) N244K possibly damaging Het
Fbxw10 A G 11: 62,767,770 (GRCm39) K874E probably damaging Het
Glra3 A G 8: 56,578,239 (GRCm39) E432G possibly damaging Het
Grin3b G A 10: 79,807,062 (GRCm39) R110Q probably benign Het
Herc3 T A 6: 58,845,748 (GRCm39) V423D possibly damaging Het
Ifit2 A T 19: 34,550,984 (GRCm39) T175S probably benign Het
Kcnj8 T G 6: 142,511,627 (GRCm39) I327L possibly damaging Het
Kcns2 A T 15: 34,839,242 (GRCm39) I202F probably benign Het
Kif12 T C 4: 63,087,010 (GRCm39) R305G possibly damaging Het
Limch1 A G 5: 67,154,576 (GRCm39) D362G probably damaging Het
Lrba T C 3: 86,687,540 (GRCm39) I2815T probably damaging Het
Lrrtm1 G T 6: 77,221,843 (GRCm39) M433I probably damaging Het
Myh7b A G 2: 155,462,040 (GRCm39) D312G probably damaging Het
Nrxn1 A T 17: 90,344,758 (GRCm39) I382N probably damaging Het
Nudt6 C T 3: 37,459,502 (GRCm39) R161H probably benign Het
Or10w1 T A 19: 13,631,816 (GRCm39) W8R probably damaging Het
Or11g2 A C 14: 50,856,044 (GRCm39) M122L possibly damaging Het
Or4m1 A T 14: 50,558,186 (GRCm39) Y35* probably null Het
Or7e166 C T 9: 19,624,945 (GRCm39) A274V probably benign Het
Pmf1 A T 3: 88,303,369 (GRCm39) V64D probably damaging Het
Pomgnt1 T A 4: 116,009,048 (GRCm39) V29D probably damaging Het
Pramel22 T A 4: 143,380,790 (GRCm39) H411L possibly damaging Het
Pramel26 A T 4: 143,539,378 (GRCm39) D38E probably benign Het
Prex1 C T 2: 166,428,457 (GRCm39) A925T probably benign Het
Pus3 A G 9: 35,476,327 (GRCm39) Y72C probably damaging Het
Rnf20 T C 4: 49,642,176 (GRCm39) S247P probably damaging Het
Rnf213 T A 11: 119,305,396 (GRCm39) D542E probably benign Het
Sidt1 T C 16: 44,063,895 (GRCm39) D786G probably benign Het
Sirt6 A T 10: 81,458,475 (GRCm39) D219E probably damaging Het
Slc36a2 A T 11: 55,072,411 (GRCm39) I67N probably damaging Het
Slc47a1 A G 11: 61,264,248 (GRCm39) F57S probably damaging Het
Spg11 T A 2: 121,924,968 (GRCm39) T756S probably damaging Het
Sptbn1 C A 11: 30,071,591 (GRCm39) R1447L probably damaging Het
Tcf7l2 A G 19: 55,907,387 (GRCm39) M340V probably damaging Het
Thap1 T C 8: 26,652,733 (GRCm39) V157A probably benign Het
Ubash3b G A 9: 40,934,853 (GRCm39) Q354* probably null Het
Wdr64 G T 1: 175,620,647 (GRCm39) R793L probably damaging Het
Zbtb24 C T 10: 41,327,432 (GRCm39) T106I probably benign Het
Zbtb26 T C 2: 37,326,337 (GRCm39) N233S possibly damaging Het
Zcchc24 A T 14: 25,757,585 (GRCm39) N99K possibly damaging Het
Other mutations in Ubtd1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02638:Ubtd1 APN 19 42,022,109 (GRCm39) missense possibly damaging 0.93
R0255:Ubtd1 UTSW 19 42,020,373 (GRCm39) missense possibly damaging 0.73
R4007:Ubtd1 UTSW 19 42,020,555 (GRCm39) nonsense probably null
R4610:Ubtd1 UTSW 19 42,022,103 (GRCm39) missense probably damaging 1.00
R4611:Ubtd1 UTSW 19 42,022,030 (GRCm39) missense probably benign 0.01
R7948:Ubtd1 UTSW 19 42,022,174 (GRCm39) missense probably benign 0.00
R8429:Ubtd1 UTSW 19 42,020,556 (GRCm39) critical splice donor site probably null
R8806:Ubtd1 UTSW 19 42,022,195 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- GCTATTCAGAAAGTGTCCCAGTGCC -3'
(R):5'- TGCGCTAATGAAACCTCCAGCC -3'

Sequencing Primer
(F):5'- TGCCCTAAATACATAGGGACTG -3'
(R):5'- CCCAGTCCAGGTAAGGACAG -3'
Posted On 2013-11-07