Mutagenetix > Incidental Mutation

Incidental Mutation 'R1087:Gm5773'

85060

Institutional Source

Beutler Lab

Gene Symbol

Gm5773

Ensembl Gene

ENSMUSG00000068879

Gene Name

predicted pseudogene 5773

Synonyms

Accession Numbers

Essential gene?

Probably essential (E-score: 0.858) question?

Stock #

R1087 (G1)

Quality Score

127

Status

Not validated

Chromosome

Chromosomal Location

93680307-93681449 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 93681065 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Phenylalanine at position 246 (I246F)

Ref Sequence

ENSEMBL: ENSMUSP00000088366 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000090853]

AlphaFold

Q717B2

Predicted Effect

probably damaging
Transcript: ENSMUST00000090853
AA Change: I246F

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000088366
Gene: ENSMUSG00000068879
AA Change: I246F

Domain	Start	End	E-Value	Type
MATH	40	130	2.58e-7	SMART
BTB	188	287	2.82e-24	SMART

Coding Region Coverage

1x: 99.4%
3x: 98.8%
10x: 97.5%
20x: 95.3%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 41 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Anxa11	A	G	14: 25,870,603 (GRCm39)	M56V	unknown	Het
Arid4a	G	A	12: 71,122,112 (GRCm39)	S509N	probably benign	Het
Atp8b3	T	C	10: 80,356,017 (GRCm39)	R1232G	probably benign	Het
Axdnd1	T	A	1: 156,193,259 (GRCm39)	M643L	probably benign	Het
Bsph1	A	G	7: 13,206,106 (GRCm39)	Y57C	probably damaging	Het
Car13	G	A	3: 14,706,885 (GRCm39)	W6*	probably null	Het
Ccdc192	T	C	18: 57,863,870 (GRCm39)	S225P	probably damaging	Het
Ccng2	T	C	5: 93,421,303 (GRCm39)	I271T	probably benign	Het
Ces1f	T	A	8: 93,984,923 (GRCm39)	D468V	probably damaging	Het
Chil4	A	G	3: 106,117,881 (GRCm39)	Y130H	probably benign	Het
Clns1a	T	A	7: 97,354,862 (GRCm39)	H69Q	possibly damaging	Het
Cnot11	T	A	1: 39,579,139 (GRCm39)	S335T	probably benign	Het
Dcaf11	A	G	14: 55,806,581 (GRCm39)	S461G	probably damaging	Het
Dlst	G	A	12: 85,179,413 (GRCm39)	M417I	probably damaging	Het
Dock4	A	C	12: 40,779,937 (GRCm39)	I612L	probably benign	Het
Endod1	A	G	9: 14,268,489 (GRCm39)	V332A	possibly damaging	Het
F830045P16Rik	T	C	2: 129,314,639 (GRCm39)	T213A	possibly damaging	Het
Gml2	T	A	15: 74,695,946 (GRCm39)	D113E	possibly damaging	Het
Grik1	T	C	16: 87,803,265 (GRCm39)	E309G	probably benign	Het
Hectd1	A	T	12: 51,823,355 (GRCm39)	I1013K	probably damaging	Het
Kcmf1	T	C	6: 72,835,863 (GRCm39)	E22G	probably damaging	Het
Kdm5b	T	A	1: 134,528,375 (GRCm39)	C361S	probably damaging	Het
Kif21b	T	C	1: 136,090,561 (GRCm39)	S1150P	probably damaging	Het
Man2b1	G	A	8: 85,821,800 (GRCm39)	V701M	probably damaging	Het
Marchf10	T	C	11: 105,281,488 (GRCm39)	R266G	probably damaging	Het
Milr1	A	G	11: 106,645,848 (GRCm39)	Y130C	probably damaging	Het
Nampt	A	G	12: 32,883,042 (GRCm39)	T76A	possibly damaging	Het
Nek10	A	G	14: 14,827,059 (GRCm38)	N86D	possibly damaging	Het
Nms	T	G	1: 38,983,192 (GRCm39)		probably null	Het
Or10w1	T	A	19: 13,632,376 (GRCm39)	C194*	probably null	Het
Parp14	A	G	16: 35,678,658 (GRCm39)	S437P	probably damaging	Het
Pif1	A	G	9: 65,496,377 (GRCm39)	M226V	probably benign	Het
Rnf169	T	C	7: 99,592,204 (GRCm39)	R216G	probably benign	Het
Rorb	T	C	19: 18,937,778 (GRCm39)	K307R	probably damaging	Het
Scube2	T	C	7: 109,430,882 (GRCm39)	D439G	probably damaging	Het
Serpinb8	T	C	1: 107,534,727 (GRCm39)	V266A	probably damaging	Het
Strip2	A	G	6: 29,927,633 (GRCm39)	E226G	probably damaging	Het
Trim23	A	G	13: 104,324,618 (GRCm39)	D212G	possibly damaging	Het
Vmn1r172	T	A	7: 23,359,673 (GRCm39)	V186D	possibly damaging	Het
Vwde	A	T	6: 13,186,803 (GRCm39)	C895S	probably damaging	Het
Zswim8	C	A	14: 20,767,933 (GRCm39)		probably null	Het

Other mutations in Gm5773

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02954:Gm5773	APN	3	93,680,358 (GRCm39)	missense	probably benign	0.15
IGL03411:Gm5773	APN	3	93,681,264 (GRCm39)	missense	probably damaging	1.00
BB005:Gm5773	UTSW	3	93,680,997 (GRCm39)	missense	probably damaging	0.96
BB015:Gm5773	UTSW	3	93,680,997 (GRCm39)	missense	probably damaging	0.96
R0239:Gm5773	UTSW	3	93,681,339 (GRCm39)	missense	probably benign	0.01
R0239:Gm5773	UTSW	3	93,681,339 (GRCm39)	missense	probably benign	0.01
R1884:Gm5773	UTSW	3	93,681,348 (GRCm39)	missense	probably benign	0.00
R2122:Gm5773	UTSW	3	93,680,624 (GRCm39)	missense	possibly damaging	0.78
R2182:Gm5773	UTSW	3	93,680,820 (GRCm39)	missense	probably benign	0.00
R4615:Gm5773	UTSW	3	93,681,339 (GRCm39)	missense	probably benign	0.01
R4650:Gm5773	UTSW	3	93,680,712 (GRCm39)	missense	probably benign	0.04
R5127:Gm5773	UTSW	3	93,680,735 (GRCm39)	missense	probably benign
R5141:Gm5773	UTSW	3	93,681,034 (GRCm39)	missense	probably benign	0.04
R5347:Gm5773	UTSW	3	93,681,090 (GRCm39)	missense	probably damaging	0.99
R6883:Gm5773	UTSW	3	93,681,162 (GRCm39)	missense	probably benign	0.31
R6962:Gm5773	UTSW	3	93,681,234 (GRCm39)	missense	possibly damaging	0.90
R7444:Gm5773	UTSW	3	93,680,850 (GRCm39)	missense	probably damaging	1.00
R7549:Gm5773	UTSW	3	93,680,323 (GRCm39)	start gained	probably benign
R7743:Gm5773	UTSW	3	93,680,565 (GRCm39)	missense	probably damaging	0.97
R7916:Gm5773	UTSW	3	93,680,586 (GRCm39)	missense	possibly damaging	0.52
R7928:Gm5773	UTSW	3	93,680,997 (GRCm39)	missense	probably damaging	0.96
R7992:Gm5773	UTSW	3	93,680,373 (GRCm39)	missense	possibly damaging	0.66
R8024:Gm5773	UTSW	3	93,680,475 (GRCm39)	missense	probably benign	0.06
R8500:Gm5773	UTSW	3	93,680,835 (GRCm39)	missense	probably benign	0.00
R8805:Gm5773	UTSW	3	93,681,042 (GRCm39)	missense	probably damaging	1.00
R9135:Gm5773	UTSW	3	93,681,179 (GRCm39)	missense	possibly damaging	0.94
R9281:Gm5773	UTSW	3	93,680,891 (GRCm39)	missense	probably benign	0.12
R9554:Gm5773	UTSW	3	93,680,340 (GRCm39)	missense	probably benign	0.00
R9566:Gm5773	UTSW	3	93,680,742 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GCCATGAAATCAGGGCTCACAAAGC -3'
(R):5'- TGGGACTCCACCATTGACTTCCAC -3'

Sequencing Primer
(F):5'- AGCCATCCTAGCAGCTCG -3'
(R):5'- CGGAGCTTTTAGAGACCTCAG -3'

Posted On

2013-11-18