Mutagenetix > Incidental Mutation

Incidental Mutation 'R4737:Slc25a3'

359355

Institutional Source

Beutler Lab

Gene Symbol

Slc25a3

Ensembl Gene

ENSMUSG00000061904

Gene Name

solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3

Synonyms

Phc, 5730556H19Rik

MMRRC Submission

042024-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R4737 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

90952436-90959902 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 90958050 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 97 (T97A)

Ref Sequence

ENSEMBL: ENSMUSP00000129301 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000076694] [ENSMUST00000163246] [ENSMUST00000164505] [ENSMUST00000170810]

AlphaFold

Q8VEM8

Predicted Effect

probably benign
Transcript: ENSMUST00000076694

SMART Domains

Protein: ENSMUSP00000075987
Gene: ENSMUSG00000061904

Domain	Start	End	E-Value	Type
low complexity region	29	46	N/A	INTRINSIC
Pfam:Mito_carr	58	147	3.9e-23	PFAM
Pfam:Mito_carr	156	243	4.8e-19	PFAM
Pfam:Mito_carr	254	338	3.7e-12	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000103979

Predicted Effect

possibly damaging
Transcript: ENSMUST00000163246
AA Change: T97A

PolyPhen 2 Score 0.659 (Sensitivity: 0.86; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000129301
Gene: ENSMUSG00000061904
AA Change: T97A

Domain	Start	End	E-Value	Type
low complexity region	29	46	N/A	INTRINSIC
low complexity region	56	73	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000164505

SMART Domains

Protein: ENSMUSP00000132480
Gene: ENSMUSG00000061904

Domain	Start	End	E-Value	Type
low complexity region	29	46	N/A	INTRINSIC
Pfam:Mito_carr	58	147	3.9e-23	PFAM
Pfam:Mito_carr	156	243	4.8e-19	PFAM
Pfam:Mito_carr	254	338	3.7e-12	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000167455

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000169339

Predicted Effect

probably benign
Transcript: ENSMUST00000170810

SMART Domains

Protein: ENSMUSP00000127098
Gene: ENSMUSG00000061904

Domain	Start	End	E-Value	Type
low complexity region	29	46	N/A	INTRINSIC
Pfam:Mito_carr	59	147	8.6e-21	PFAM
Pfam:Mito_carr	157	245	4.4e-19	PFAM
Pfam:Mito_carr	255	339	2.8e-10	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000172442

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000171960

Meta Mutation Damage Score

0.1795

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.2%
20x: 95.3%

Validation Efficiency

100% (94/94)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene catalyzes the transport of phosphate into the mitochondrial matrix, either by proton cotransport or in exchange for hydroxyl ions. The protein contains three related segments arranged in tandem which are related to those found in other characterized members of the mitochondrial carrier family. Both the N-terminal and C-terminal regions of this protein protrude toward the cytosol. Multiple alternatively spliced transcript variants have been isolated. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 88 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A430110L20Rik	A	G	1: 181,055,384 (GRCm39)		noncoding transcript	Het
Acp2	A	T	2: 91,041,068 (GRCm39)	R419W	probably benign	Het
Actr5	A	G	2: 158,469,991 (GRCm39)	N207S	probably damaging	Het
Afap1	G	A	5: 36,119,126 (GRCm39)	V254M	probably benign	Het
Arfgef1	A	T	1: 10,259,836 (GRCm39)	M544K	possibly damaging	Het
Arhgap5	A	T	12: 52,565,860 (GRCm39)	M944L	probably benign	Het
Bnip3l-ps	G	A	12: 18,266,773 (GRCm39)		noncoding transcript	Het
Carf	A	G	1: 60,148,477 (GRCm39)	T58A	probably benign	Het
Carns1	A	G	19: 4,220,927 (GRCm39)		probably benign	Het
Ccp110	T	A	7: 118,323,771 (GRCm39)	I670K	possibly damaging	Het
Cftr	T	A	6: 18,299,882 (GRCm39)	D1218E	probably benign	Het
Chrna9	A	T	5: 66,125,214 (GRCm39)	T52S	probably damaging	Het
Chst9	T	C	18: 15,585,834 (GRCm39)	Y243C	probably damaging	Het
Ciao3	A	T	17: 26,000,283 (GRCm39)	H322L	probably damaging	Het
Cilk1	A	G	9: 78,057,936 (GRCm39)	T162A	probably damaging	Het
Clk2	A	T	3: 89,076,016 (GRCm39)	H62L	probably benign	Het
Cntnap2	A	T	6: 45,037,251 (GRCm39)	R10W	possibly damaging	Het
Cpt1b	C	T	15: 89,305,609 (GRCm39)	D369N	probably benign	Het
Crhr2	G	T	6: 55,068,290 (GRCm39)	H423Q	probably damaging	Het
D8Ertd738e	T	A	8: 84,976,150 (GRCm39)	I33F	probably damaging	Het
Dbt	T	C	3: 116,332,781 (GRCm39)	I200T	probably damaging	Het
Ddhd1	A	T	14: 45,866,278 (GRCm39)		probably benign	Het
Ddx27	A	G	2: 166,871,219 (GRCm39)	I480V	probably benign	Het
Dpp9	A	C	17: 56,505,970 (GRCm39)		probably null	Het
Dpy19l3	A	T	7: 35,402,926 (GRCm39)	M562K	probably damaging	Het
Dus3l	T	C	17: 57,074,868 (GRCm39)	L330P	probably damaging	Het
Efcab7	C	T	4: 99,719,805 (GRCm39)	Q96*	probably null	Het
Egfr	T	C	11: 16,819,231 (GRCm39)	F254L	probably damaging	Het
Eml5	C	T	12: 98,765,111 (GRCm39)	V1566M	probably damaging	Het
Entpd7	T	A	19: 43,679,634 (GRCm39)	Y62*	probably null	Het
Erbb4	T	C	1: 68,383,059 (GRCm39)	M313V	probably damaging	Het
Gm5528	A	G	1: 72,043,711 (GRCm39)		noncoding transcript	Het
H2-M9	G	T	17: 36,951,631 (GRCm39)	Y281*	probably null	Het
Hmcn1	T	G	1: 150,565,346 (GRCm39)	K2260N	possibly damaging	Het
Hnf4a	A	G	2: 163,406,139 (GRCm39)	I259V	probably benign	Het
Insm1	A	T	2: 146,064,822 (GRCm39)	T213S	probably benign	Het
Iqca1	T	C	1: 90,005,544 (GRCm39)	D488G	probably damaging	Het
Kdm5a	T	A	6: 120,382,976 (GRCm39)		probably benign	Het
Kdm7a	G	C	6: 39,129,773 (GRCm39)	L468V	possibly damaging	Het
Lck	G	A	4: 129,449,777 (GRCm39)	T229I	possibly damaging	Het
Lig3	T	C	11: 82,678,553 (GRCm39)	L265P	probably damaging	Het
Lipa	T	A	19: 34,479,034 (GRCm39)	K229*	probably null	Het
Lrrk1	C	T	7: 65,956,621 (GRCm39)	S418N	probably benign	Het
Mark2	A	G	19: 7,258,597 (GRCm39)	V126A	probably damaging	Het
Met	T	C	6: 17,491,540 (GRCm39)	C101R	probably damaging	Het
Mkln1	A	T	6: 31,403,734 (GRCm39)	K85M	probably damaging	Het
Mst1	A	G	9: 107,957,720 (GRCm39)	R15G	probably benign	Het
Muc6	T	G	7: 141,226,426 (GRCm39)		probably benign	Het
Muc6	G	T	7: 141,218,685 (GRCm39)	T1996N	possibly damaging	Het
Myo7b	T	C	18: 32,131,655 (GRCm39)	S514G	probably damaging	Het
Nars1	T	C	18: 64,649,498 (GRCm39)	E11G	probably benign	Het
Ogdh	T	A	11: 6,247,044 (GRCm39)	F23I	probably benign	Het
Or10g9	A	T	9: 39,911,718 (GRCm39)	D268E	probably damaging	Het
Or12e9	T	C	2: 87,202,665 (GRCm39)	I263T	probably damaging	Het
Or4a39	C	T	2: 89,236,830 (GRCm39)	V198I	probably benign	Het
Or4b1b	A	G	2: 90,112,725 (GRCm39)	S65P	probably damaging	Het
Or4c100	C	T	2: 88,356,569 (GRCm39)	S214F	probably damaging	Het
Or52r1c	C	T	7: 102,735,121 (GRCm39)	A127V	probably damaging	Het
Or9k2	T	A	10: 129,998,707 (GRCm39)	T163S	probably benign	Het
Otub2	T	A	12: 103,359,103 (GRCm39)	L64Q	probably benign	Het
Pappa2	T	C	1: 158,784,582 (GRCm39)	R143G	probably benign	Het
Patl2	T	A	2: 121,955,787 (GRCm39)	T250S	probably damaging	Het
Pcdhac2	C	T	18: 37,278,952 (GRCm39)	T644I	possibly damaging	Het
Pi4kb	C	T	3: 94,911,649 (GRCm39)	T690I	probably damaging	Het
Pla2g4d	T	C	2: 120,097,271 (GRCm39)	Y776C	probably benign	Het
Plekhh2	C	T	17: 84,871,387 (GRCm39)	S215L	probably benign	Het
Psmd2	T	G	16: 20,478,565 (GRCm39)		probably benign	Het
Ptpn21	T	C	12: 98,675,103 (GRCm39)	E183G	probably benign	Het
Ptprg	T	A	14: 12,226,314 (GRCm38)	D527E	probably damaging	Het
Rhobtb1	T	A	10: 69,115,327 (GRCm39)		probably null	Het
Scel	T	A	14: 103,809,473 (GRCm39)	M271K	possibly damaging	Het
Senp3	A	T	11: 69,569,655 (GRCm39)	C310*	probably null	Het
Srsf11	A	T	3: 157,732,369 (GRCm39)	Y82*	probably null	Het
Tbc1d8	G	A	1: 39,441,959 (GRCm39)	T211I	possibly damaging	Het
Tbkbp1	T	C	11: 97,039,474 (GRCm39)	E145G	probably damaging	Het
Tln1	T	C	4: 43,540,588 (GRCm39)	N1471S	probably benign	Het
Tnn	T	G	1: 159,973,659 (GRCm39)	D236A	probably damaging	Het
Trmt2a	C	T	16: 18,069,150 (GRCm39)		probably benign	Het
Ttn	A	T	2: 76,641,587 (GRCm39)	L5176Q	possibly damaging	Het
Ubxn10	G	A	4: 138,463,259 (GRCm39)		probably benign	Het
Ulk4	G	A	9: 120,902,938 (GRCm39)	Q1180*	probably null	Het
Usp43	T	A	11: 67,746,331 (GRCm39)	K1120N	probably damaging	Het
Uspl1	T	A	5: 149,131,149 (GRCm39)	L244Q	possibly damaging	Het
Vmn1r32	T	C	6: 66,530,629 (GRCm39)	H49R	probably damaging	Het
Vmn2r4	T	C	3: 64,317,384 (GRCm39)	D118G	probably damaging	Het
Vwce	A	G	19: 10,627,943 (GRCm39)	I468V	probably benign	Het
Zbtb7c	G	T	18: 76,279,225 (GRCm39)	R561L	probably benign	Het
Zfp956	T	C	6: 47,939,476 (GRCm39)	S175P	probably damaging	Het

Other mutations in Slc25a3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01702:Slc25a3	APN	10	90,953,987 (GRCm39)	missense	probably damaging	0.96
IGL02193:Slc25a3	APN	10	90,953,977 (GRCm39)	missense	probably benign	0.01
R1215:Slc25a3	UTSW	10	90,953,170 (GRCm39)	missense	possibly damaging	0.95
R5418:Slc25a3	UTSW	10	90,955,398 (GRCm39)	missense	probably benign
R5799:Slc25a3	UTSW	10	90,957,903 (GRCm39)	missense	probably benign
R6228:Slc25a3	UTSW	10	90,958,090 (GRCm39)	missense	probably damaging	0.98
R6269:Slc25a3	UTSW	10	90,952,963 (GRCm39)	nonsense	probably null
R6414:Slc25a3	UTSW	10	90,958,190 (GRCm39)	missense	possibly damaging	0.66
R6866:Slc25a3	UTSW	10	90,955,567 (GRCm39)	missense	probably damaging	0.99
R7404:Slc25a3	UTSW	10	90,952,902 (GRCm39)	missense	possibly damaging	0.69
R7633:Slc25a3	UTSW	10	90,953,904 (GRCm39)	critical splice donor site	probably null
R8222:Slc25a3	UTSW	10	90,954,053 (GRCm39)	missense	probably damaging	1.00
R8751:Slc25a3	UTSW	10	90,952,960 (GRCm39)	missense	probably benign	0.06
Z1176:Slc25a3	UTSW	10	90,959,473 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- ATGGAGCCAAATTCACAACTG -3'
(R):5'- TGGTGGCTAAAGCTGCATAC -3'

Sequencing Primer
(F):5'- GGAGCCAAATTCACAACTGTACTCTG -3'
(R):5'- GTGGCACAACACATACAG -3'

Posted On

2015-11-11