Mutagenetix > Incidental Mutation

Incidental Mutation 'R5010:Psg28'

390435

Institutional Source

Beutler Lab

Gene Symbol

Psg28

Ensembl Gene

ENSMUSG00000030373

Gene Name

pregnancy-specific beta-1-glycoprotein 28

Synonyms

MMRRC Submission

042601-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.085) question?

Stock #

R5010 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

18156461-18165966 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 18161816 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 229 (V229A)

Ref Sequence

ENSEMBL: ENSMUSP00000019291 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000019291]

AlphaFold

Q4KL66

Predicted Effect

probably damaging
Transcript: ENSMUST00000019291
AA Change: V229A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000019291
Gene: ENSMUSG00000030373
AA Change: V229A

Domain	Start	End	E-Value	Type
IG	40	138	1.84e-2	SMART
IG	157	258	1.67e0	SMART
IG	277	376	1.65e-4	SMART
IGc2	394	458	8.31e-10	SMART

Meta Mutation Damage Score

0.3380

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.7%
20x: 93.6%

Validation Efficiency

98% (65/66)

Allele List at MGI

Other mutations in this stock

Total: 60 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1810065E05Rik	C	T	11: 58,313,630 (GRCm39)	A86V	possibly damaging	Het
9430097D07Rik	A	G	2: 32,464,440 (GRCm39)		probably benign	Het
Actr5	T	A	2: 158,477,283 (GRCm39)	D411E	probably benign	Het
Ang5	A	G	14: 44,200,302 (GRCm39)	D122G	probably benign	Het
Atg9a	A	T	1: 75,162,704 (GRCm39)		probably null	Het
Cracd	G	C	5: 76,805,681 (GRCm39)		probably benign	Het
Dctd	C	T	8: 48,590,449 (GRCm39)		probably benign	Het
Ddx11	G	A	17: 66,454,717 (GRCm39)	V642M	possibly damaging	Het
Dis3l2	G	A	1: 86,688,043 (GRCm39)	V100I	probably benign	Het
Echdc2	T	C	4: 108,029,328 (GRCm39)	V111A	probably benign	Het
Egr1	A	G	18: 34,996,711 (GRCm39)	T498A	probably benign	Het
Exosc3	T	C	4: 45,317,702 (GRCm39)	K200R	possibly damaging	Het
Exosc8	T	C	3: 54,636,644 (GRCm39)	D229G	probably benign	Het
Ext1	T	A	15: 52,955,808 (GRCm39)	I430F	probably damaging	Het
Fbxw22	T	C	9: 109,232,492 (GRCm39)	N31S	probably benign	Het
Gja8	T	C	3: 96,827,165 (GRCm39)	T166A	probably benign	Het
Gm21814	T	A	6: 149,485,116 (GRCm39)		noncoding transcript	Het
Gm21915	T	A	9: 40,581,944 (GRCm39)	H12Q	probably benign	Het
Hgsnat	G	A	8: 26,437,988 (GRCm39)	R527*	probably null	Het
Iqgap2	A	G	13: 95,810,251 (GRCm39)	F731S	probably benign	Het
Jchain	T	C	5: 88,670,364 (GRCm39)	H85R	probably damaging	Het
Kcnb2	T	C	1: 15,383,186 (GRCm39)	C171R	probably benign	Het
Kcnk3	C	A	5: 30,780,149 (GRCm39)	R400S	possibly damaging	Het
Klhl28	C	T	12: 65,004,001 (GRCm39)	E171K	probably damaging	Het
Lrrfip2	T	C	9: 111,053,040 (GRCm39)	I375T	possibly damaging	Het
Mccc1	T	C	3: 36,033,166 (GRCm39)	N326S	probably benign	Het
Med13l	T	C	5: 118,731,615 (GRCm39)	V97A	possibly damaging	Het
Mertk	C	A	2: 128,625,920 (GRCm39)	T685K	probably benign	Het
Msh2	C	A	17: 88,030,841 (GRCm39)	A906E	probably benign	Het
Myom2	G	A	8: 15,133,310 (GRCm39)	V401M	probably damaging	Het
Nme5	A	C	18: 34,711,738 (GRCm39)	M1R	probably null	Het
Nop2	T	C	6: 125,110,726 (GRCm39)	S68P	probably benign	Het
Notch1	A	T	2: 26,366,126 (GRCm39)	D809E	possibly damaging	Het
Or14c39	T	C	7: 86,343,793 (GRCm39)	I43T	possibly damaging	Het
Ppat	C	T	5: 77,076,525 (GRCm39)		probably benign	Het
Prss23	T	A	7: 89,159,422 (GRCm39)	M216L	probably benign	Het
Psg18	A	T	7: 18,083,279 (GRCm39)	V171D	probably damaging	Het
Qser1	T	C	2: 104,618,176 (GRCm39)	N879D	possibly damaging	Het
Rpap1	T	C	2: 119,600,522 (GRCm39)	N879S	probably benign	Het
Rusc2	T	C	4: 43,415,926 (GRCm39)	S411P	probably damaging	Het
Rxfp2	T	A	5: 149,990,825 (GRCm39)	W519R	probably damaging	Het
Scpep1	T	A	11: 88,832,175 (GRCm39)	Q185L	probably benign	Het
Serpinb11	A	G	1: 107,307,379 (GRCm39)	N270S	probably benign	Het
Serpinb6d	T	A	13: 33,855,427 (GRCm39)	M367K	probably benign	Het
Skint10	T	G	4: 112,584,869 (GRCm39)	I213L	probably benign	Het
Skint5	T	C	4: 113,403,734 (GRCm39)	T1163A	unknown	Het
Slamf9	A	T	1: 172,303,780 (GRCm39)	I42L	possibly damaging	Het
Slc1a3	T	C	15: 8,680,330 (GRCm39)		probably benign	Het
Smad6	T	A	9: 63,861,182 (GRCm39)	Q371L	possibly damaging	Het
Snx31	A	T	15: 36,555,469 (GRCm39)	V26E	probably damaging	Het
Spata31e5	A	G	1: 28,816,943 (GRCm39)	I363T	possibly damaging	Het
Taf4b	A	G	18: 14,955,229 (GRCm39)	N594S	possibly damaging	Het
Tanc2	T	C	11: 105,670,918 (GRCm39)	S172P	probably damaging	Het
Tas2r110	T	A	6: 132,845,438 (GRCm39)	Y156*	probably null	Het
Tbc1d20	G	A	2: 152,135,856 (GRCm39)		probably benign	Het
Timm50	A	T	7: 28,006,284 (GRCm39)	D272E	probably benign	Het
Ttn	T	G	2: 76,730,855 (GRCm39)		probably benign	Het
Vps13c	T	A	9: 67,823,661 (GRCm39)	F1362I	probably benign	Het
Vwf	T	C	6: 125,543,220 (GRCm39)	S154P	probably benign	Het
Zfp445	T	C	9: 122,681,410 (GRCm39)	R844G	probably benign	Het

Other mutations in Psg28

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00673:Psg28	APN	7	18,161,816 (GRCm39)	missense	probably damaging	1.00
IGL01118:Psg28	APN	7	18,162,017 (GRCm39)	missense	probably damaging	1.00
IGL01606:Psg28	APN	7	18,164,296 (GRCm39)	missense	probably benign	0.01
R0276:Psg28	UTSW	7	18,164,321 (GRCm39)	missense	probably benign	0.00
R0391:Psg28	UTSW	7	18,160,098 (GRCm39)	missense	probably benign	0.02
R0713:Psg28	UTSW	7	18,156,999 (GRCm39)	missense	possibly damaging	0.61
R1454:Psg28	UTSW	7	18,161,889 (GRCm39)	missense	possibly damaging	0.50
R1725:Psg28	UTSW	7	18,161,936 (GRCm39)	missense	possibly damaging	0.67
R2176:Psg28	UTSW	7	18,161,804 (GRCm39)	missense	probably damaging	1.00
R3154:Psg28	UTSW	7	18,160,348 (GRCm39)	missense	possibly damaging	0.91
R4520:Psg28	UTSW	7	18,156,826 (GRCm39)	missense	probably benign	0.00
R5529:Psg28	UTSW	7	18,164,373 (GRCm39)	missense	probably benign	0.15
R5772:Psg28	UTSW	7	18,164,640 (GRCm39)	missense	probably damaging	1.00
R6039:Psg28	UTSW	7	18,160,107 (GRCm39)	missense	possibly damaging	0.82
R6039:Psg28	UTSW	7	18,160,107 (GRCm39)	missense	possibly damaging	0.82
R6046:Psg28	UTSW	7	18,160,305 (GRCm39)	missense	probably damaging	1.00
R6275:Psg28	UTSW	7	18,164,365 (GRCm39)	missense	probably damaging	1.00
R6586:Psg28	UTSW	7	18,164,469 (GRCm39)	missense	probably damaging	0.99
R6928:Psg28	UTSW	7	18,157,003 (GRCm39)	missense	possibly damaging	0.80
R7197:Psg28	UTSW	7	18,164,509 (GRCm39)	missense	probably damaging	1.00
R7237:Psg28	UTSW	7	18,161,769 (GRCm39)	missense	possibly damaging	0.65
R7859:Psg28	UTSW	7	18,160,149 (GRCm39)	missense	probably damaging	1.00
R7863:Psg28	UTSW	7	18,162,042 (GRCm39)	missense	possibly damaging	0.62
R7993:Psg28	UTSW	7	18,160,401 (GRCm39)	missense	possibly damaging	0.63
R8009:Psg28	UTSW	7	18,156,922 (GRCm39)	missense	probably damaging	0.96
R8115:Psg28	UTSW	7	18,164,311 (GRCm39)	missense	probably benign	0.15
R8247:Psg28	UTSW	7	18,156,864 (GRCm39)	missense	probably benign	0.01
R8984:Psg28	UTSW	7	18,156,981 (GRCm39)	missense	probably damaging	0.97
R9160:Psg28	UTSW	7	18,164,640 (GRCm39)	missense	probably damaging	1.00
R9266:Psg28	UTSW	7	18,161,752 (GRCm39)	missense	probably benign	0.01
R9336:Psg28	UTSW	7	18,156,905 (GRCm39)	missense	possibly damaging	0.67
R9758:Psg28	UTSW	7	18,164,602 (GRCm39)	missense	probably benign	0.18
R9758:Psg28	UTSW	7	18,156,887 (GRCm39)	nonsense	probably null
R9782:Psg28	UTSW	7	18,164,331 (GRCm39)	missense	probably benign	0.00
RF016:Psg28	UTSW	7	18,156,847 (GRCm39)	missense	probably damaging	0.97
X0020:Psg28	UTSW	7	18,161,864 (GRCm39)	missense	possibly damaging	0.95

Predicted Primers

PCR Primer
(F):5'- GGAGGTAGTCACATGTCAGCAG -3'
(R):5'- CCCACTATTGAATTAGTGCCGAC -3'

Sequencing Primer
(F):5'- CAGTGACAGTGCTCTTGGTAGAAG -3'
(R):5'- CTATTGAATTAGTGCCGACCAGCG -3'

Posted On

2016-06-06