Incidental Mutation 'R9709:Sbf2'
ID 729975
Institutional Source Beutler Lab
Gene Symbol Sbf2
Ensembl Gene ENSMUSG00000038371
Gene Name SET binding factor 2
Synonyms B430219L04Rik, 4833411B01Rik, SBF2, Mtmr13, mMTMH1
MMRRC Submission
Accession Numbers
Essential gene? Possibly non essential (E-score: 0.393) question?
Stock # R9709 (G1)
Quality Score 225.009
Status Not validated
Chromosome 7
Chromosomal Location 109907220-110214129 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to T at 110027514 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Proline to Glutamine at position 494 (P494Q)
Ref Sequence ENSEMBL: ENSMUSP00000033058 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000033058] [ENSMUST00000164759] [ENSMUST00000166020]
AlphaFold E9PXF8
Predicted Effect probably damaging
Transcript: ENSMUST00000033058
AA Change: P494Q

PolyPhen 2 Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000033058
Gene: ENSMUSG00000038371
AA Change: P494Q

DomainStartEndE-ValueType
uDENN 1 87 2.27e-33 SMART
DENN 116 298 5.68e-75 SMART
dDENN 351 420 2e-20 SMART
Pfam:SBF2 530 752 3.3e-106 PFAM
GRAM 869 955 1.3e-12 SMART
low complexity region 1078 1089 N/A INTRINSIC
Pfam:Myotub-related 1091 1544 8.3e-86 PFAM
PH 1767 1872 3.05e-18 SMART
Predicted Effect
SMART Domains Protein: ENSMUSP00000128265
Gene: ENSMUSG00000038371
AA Change: P101Q

DomainStartEndE-ValueType
dDENN 2 74 3.04e-2 SMART
Pfam:SBF2 138 177 1.6e-13 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000164759
AA Change: P494Q

PolyPhen 2 Score 0.995 (Sensitivity: 0.68; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000132072
Gene: ENSMUSG00000038371
AA Change: P494Q

DomainStartEndE-ValueType
uDENN 1 87 2.27e-33 SMART
DENN 116 298 5.68e-75 SMART
dDENN 351 420 2e-20 SMART
Pfam:SBF2 528 752 1.6e-107 PFAM
GRAM 869 955 1.3e-12 SMART
Pfam:Myotub-related 1089 1521 1.6e-98 PFAM
PH 1742 1847 3.05e-18 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000166020
AA Change: P448Q

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000126217
Gene: ENSMUSG00000038371
AA Change: P448Q

DomainStartEndE-ValueType
uDENN 1 75 9.26e-1 SMART
DENN 70 252 5.68e-75 SMART
dDENN 305 374 2e-20 SMART
Pfam:SBF2 482 706 1.6e-107 PFAM
GRAM 823 909 1.3e-12 SMART
Pfam:Myotub-related 1043 1500 5.9e-98 PFAM
PH 1721 1826 3.05e-18 SMART
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.5%
  • 20x: 98.3%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a pseudophosphatase and member of the myotubularin-related protein family. This gene maps within the CMT4B2 candidate region of chromosome 11p15 and mutations in this gene have been associated with Charcot-Marie-Tooth Disease, type 4B2. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for null alleles display progressive misfolding of myelin sheaths and abnormal nerve electrophysiology. [provided by MGI curators]
Allele List at MGI

All alleles(11) : Targeted, other(2) Gene trapped(9)

Other mutations in this stock
Total: 100 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1810062G17Rik T C 3: 36,530,356 (GRCm39) S25P unknown Het
4921539E11Rik A G 4: 103,092,678 (GRCm39) I268T unknown Het
4930507D05Rik T A 10: 62,285,581 (GRCm39) C102S unknown Het
Abca14 T A 7: 119,888,739 (GRCm39) Y1228* probably null Het
Abca17 T C 17: 24,517,934 (GRCm39) I792V probably benign Het
Abca6 C A 11: 110,102,589 (GRCm39) L878F probably benign Het
Adk C A 14: 21,126,386 (GRCm39) T4N probably benign Het
Ankrd40cl G A 11: 94,175,560 (GRCm39) S65N probably benign Het
Atg2b A T 12: 105,611,140 (GRCm39) F1264I probably damaging Het
Atl3 T G 19: 7,507,921 (GRCm39) S358A probably benign Het
Atp8a2 T A 14: 60,271,187 (GRCm39) Y248F probably damaging Het
Bcas3 T C 11: 85,474,749 (GRCm39) V785A probably damaging Het
Cckar C T 5: 53,860,201 (GRCm39) probably null Het
Cdc42se2 A G 11: 54,614,417 (GRCm39) F47L probably benign Het
Cfap58 T C 19: 47,963,992 (GRCm39) L540P probably damaging Het
Copg1 A G 6: 87,868,957 (GRCm39) E117G probably benign Het
Cstpp1 T C 2: 91,112,099 (GRCm39) Q250R probably benign Het
Cul2 C T 18: 3,431,560 (GRCm39) T655M probably damaging Het
Ddi2 T C 4: 141,412,429 (GRCm39) Q161R probably benign Het
Dffb T C 4: 154,059,121 (GRCm39) Y52C probably damaging Het
Dll1 T C 17: 15,591,198 (GRCm39) Q249R probably benign Het
Dnmt3a T A 12: 3,957,701 (GRCm39) I894N probably damaging Het
Fshr G A 17: 89,293,265 (GRCm39) T471I probably damaging Het
Gabpb1 C T 2: 126,500,488 (GRCm39) V4I probably benign Het
Gbp9 T C 5: 105,231,542 (GRCm39) Q348R probably damaging Het
Gm21149 G A 5: 15,677,110 (GRCm39) S248F unknown Het
Gpr152 C A 19: 4,192,640 (GRCm39) H60Q probably benign Het
Hdac9 A G 12: 34,362,602 (GRCm39) S612P probably benign Het
Hhipl2 A G 1: 183,199,747 (GRCm39) D102G possibly damaging Het
Hspa9 A G 18: 35,073,294 (GRCm39) V530A possibly damaging Het
Igfbp7 T C 5: 77,549,384 (GRCm39) N173S unknown Het
Ighv1-75 A G 12: 115,797,791 (GRCm39) S44P possibly damaging Het
Iqgap3 C A 3: 88,016,176 (GRCm39) F986L probably damaging Het
Itgax G T 7: 127,735,500 (GRCm39) G523W probably damaging Het
Itih3 A G 14: 30,637,587 (GRCm39) probably null Het
Kcnb2 T C 1: 15,780,523 (GRCm39) I465T probably benign Het
Kmt2b A G 7: 30,279,228 (GRCm39) V1478A probably damaging Het
Ky A T 9: 102,419,411 (GRCm39) I473F probably damaging Het
Lbr A G 1: 181,666,034 (GRCm39) V25A probably damaging Het
Ldlr A G 9: 21,657,135 (GRCm39) T751A probably benign Het
Lrrtm4 A G 6: 80,786,154 (GRCm39) E587G probably damaging Het
Lvrn A C 18: 47,006,847 (GRCm39) probably null Het
Mast2 A T 4: 116,173,044 (GRCm39) C594S probably damaging Het
Mast4 A G 13: 102,910,711 (GRCm39) V644A probably damaging Het
Mcm5 T C 8: 75,842,604 (GRCm39) Y293H probably damaging Het
Mthfd2 A T 6: 83,283,665 (GRCm39) V339E possibly damaging Het
Muc4 A T 16: 32,590,644 (GRCm39) I881F Het
Myo7a A G 7: 97,743,536 (GRCm39) S372P possibly damaging Het
Nbea T A 3: 55,693,879 (GRCm39) K2180* probably null Het
Neb T C 2: 52,101,507 (GRCm39) D4621G probably damaging Het
Nefh C T 11: 4,890,042 (GRCm39) S859N probably benign Het
Nek2 T A 1: 191,563,289 (GRCm39) H384Q possibly damaging Het
Nfkb2 A G 19: 46,298,782 (GRCm39) E645G probably benign Het
Nin G T 12: 70,149,468 (GRCm39) P47Q Het
Nit1 C A 1: 171,171,307 (GRCm39) K178N probably benign Het
Nrap C A 19: 56,317,452 (GRCm39) K1433N probably damaging Het
Nrap T C 19: 56,317,453 (GRCm39) K1433R probably benign Het
Nup85 A G 11: 115,457,463 (GRCm39) Y55C possibly damaging Het
Or2a14 G T 6: 43,130,469 (GRCm39) V77F possibly damaging Het
Pde1b A G 15: 103,411,985 (GRCm39) K29E probably benign Het
Pheta2 G T 15: 82,227,537 (GRCm39) D19Y probably damaging Het
Pheta2 C G 15: 82,227,535 (GRCm39) A18G probably damaging Het
Pik3cg A T 12: 32,226,687 (GRCm39) Y1067N probably benign Het
Pkd1l1 C T 11: 8,799,016 (GRCm39) G2249S probably damaging Het
Plppr4 T A 3: 117,121,976 (GRCm39) T201S possibly damaging Het
Polr1e A G 4: 45,018,678 (GRCm39) T3A probably benign Het
Polr1has A T 17: 37,275,249 (GRCm39) R7S probably benign Het
Pou6f2 G T 13: 18,414,389 (GRCm39) Q129K unknown Het
Ppil4 T A 10: 7,675,341 (GRCm39) D163E probably benign Het
Pradc1 A G 6: 85,424,952 (GRCm39) F82L probably benign Het
Psd3 T C 8: 68,194,414 (GRCm39) K784R probably null Het
Ptgs1 C A 2: 36,141,204 (GRCm39) S550R probably damaging Het
Pxylp1 A G 9: 96,711,030 (GRCm39) L153P probably damaging Het
Rgs10 A C 7: 127,975,729 (GRCm39) F146C probably damaging Het
Rimbp2 G A 5: 128,874,875 (GRCm39) P239S probably damaging Het
Rp1 A G 1: 4,112,255 (GRCm39) Y1199H unknown Het
Rrp12 A T 19: 41,857,231 (GRCm39) M1181K probably benign Het
Rundc3b T C 5: 8,570,982 (GRCm39) N279S probably benign Het
Scnn1b A G 7: 121,509,693 (GRCm39) T281A probably benign Het
Scube2 A T 7: 109,430,971 (GRCm39) N409K probably damaging Het
Serpina3m A C 12: 104,359,008 (GRCm39) D340A probably damaging Het
Sez6 G A 11: 77,865,121 (GRCm39) E623K possibly damaging Het
Sgpp2 T C 1: 78,367,200 (GRCm39) I111T probably benign Het
Shprh C T 10: 11,038,574 (GRCm39) T443I possibly damaging Het
Sis T A 3: 72,799,074 (GRCm39) Y1726F possibly damaging Het
Slc17a9 T C 2: 180,374,321 (GRCm39) L129P probably damaging Het
Slc1a5 T A 7: 16,527,729 (GRCm39) F342I probably benign Het
Slc4a4 T A 5: 89,188,205 (GRCm39) probably null Het
Slco3a1 T C 7: 73,952,957 (GRCm39) E534G possibly damaging Het
Smok2b A T 17: 13,454,052 (GRCm39) I71F possibly damaging Het
Tmbim7 A T 5: 3,711,809 (GRCm39) H18L probably damaging Het
Tmem151a A T 19: 5,131,876 (GRCm39) Y443* probably null Het
Tnks1bp1 T G 2: 84,902,125 (GRCm39) S1674A probably benign Het
Trappc11 T A 8: 47,946,348 (GRCm39) I1095F probably damaging Het
Trim11 A G 11: 58,872,864 (GRCm39) R183G possibly damaging Het
Trim29 A G 9: 43,231,797 (GRCm39) D348G probably benign Het
Ttc28 A T 5: 111,433,637 (GRCm39) S2224C probably damaging Het
Vps13d C T 4: 144,875,915 (GRCm39) V1537M Het
Zfp1005 T A 2: 150,110,305 (GRCm39) C332S possibly damaging Het
Zfp184 A G 13: 22,143,665 (GRCm39) D457G possibly damaging Het
Other mutations in Sbf2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00421:Sbf2 APN 7 109,975,039 (GRCm39) splice site probably benign
IGL01089:Sbf2 APN 7 109,948,169 (GRCm39) missense probably damaging 1.00
IGL01144:Sbf2 APN 7 109,929,110 (GRCm39) missense probably damaging 1.00
IGL01652:Sbf2 APN 7 110,046,327 (GRCm39) missense probably damaging 1.00
IGL01950:Sbf2 APN 7 109,965,032 (GRCm39) missense probably benign 0.00
IGL02027:Sbf2 APN 7 110,060,348 (GRCm39) missense probably damaging 1.00
IGL02244:Sbf2 APN 7 110,159,502 (GRCm39) missense probably damaging 1.00
IGL02376:Sbf2 APN 7 110,062,163 (GRCm39) missense probably damaging 0.99
IGL03405:Sbf2 APN 7 110,062,139 (GRCm39) missense probably damaging 0.98
N/A - 535:Sbf2 UTSW 7 109,911,959 (GRCm39) missense probably benign
R0084:Sbf2 UTSW 7 110,041,573 (GRCm39) missense possibly damaging 0.95
R0092:Sbf2 UTSW 7 109,920,013 (GRCm39) splice site probably benign
R0121:Sbf2 UTSW 7 110,088,426 (GRCm39) critical splice donor site probably null
R0464:Sbf2 UTSW 7 110,063,783 (GRCm39) splice site probably benign
R0505:Sbf2 UTSW 7 109,998,550 (GRCm39) missense probably damaging 1.00
R0531:Sbf2 UTSW 7 109,966,530 (GRCm39) splice site probably benign
R0554:Sbf2 UTSW 7 110,027,494 (GRCm39) missense probably damaging 1.00
R0617:Sbf2 UTSW 7 109,929,890 (GRCm39) frame shift probably null
R0619:Sbf2 UTSW 7 109,909,469 (GRCm39) missense possibly damaging 0.87
R0799:Sbf2 UTSW 7 109,940,562 (GRCm39) missense possibly damaging 0.58
R0898:Sbf2 UTSW 7 109,970,859 (GRCm39) missense possibly damaging 0.59
R1077:Sbf2 UTSW 7 109,966,379 (GRCm39) splice site probably benign
R1167:Sbf2 UTSW 7 109,963,756 (GRCm39) missense probably damaging 1.00
R1169:Sbf2 UTSW 7 109,909,391 (GRCm39) missense probably benign 0.04
R1424:Sbf2 UTSW 7 109,914,233 (GRCm39) missense probably damaging 1.00
R1536:Sbf2 UTSW 7 109,977,250 (GRCm39) missense probably damaging 1.00
R1558:Sbf2 UTSW 7 110,027,553 (GRCm39) missense probably damaging 1.00
R1601:Sbf2 UTSW 7 109,939,283 (GRCm39) critical splice acceptor site probably null
R1762:Sbf2 UTSW 7 109,911,965 (GRCm39) missense probably benign
R1771:Sbf2 UTSW 7 110,060,353 (GRCm39) nonsense probably null
R1989:Sbf2 UTSW 7 109,948,130 (GRCm39) missense possibly damaging 0.94
R2109:Sbf2 UTSW 7 110,060,419 (GRCm39) missense probably damaging 1.00
R2126:Sbf2 UTSW 7 110,159,502 (GRCm39) missense probably damaging 1.00
R2444:Sbf2 UTSW 7 109,929,905 (GRCm39) missense probably benign 0.31
R3765:Sbf2 UTSW 7 109,974,788 (GRCm39) missense probably damaging 1.00
R3808:Sbf2 UTSW 7 110,088,487 (GRCm39) makesense probably null
R3895:Sbf2 UTSW 7 110,046,298 (GRCm39) missense probably damaging 0.99
R3978:Sbf2 UTSW 7 109,929,092 (GRCm39) missense probably benign 0.00
R4056:Sbf2 UTSW 7 110,040,673 (GRCm39) missense probably damaging 0.99
R4057:Sbf2 UTSW 7 110,040,673 (GRCm39) missense probably damaging 0.99
R4111:Sbf2 UTSW 7 110,027,449 (GRCm39) missense probably damaging 1.00
R4569:Sbf2 UTSW 7 109,948,060 (GRCm39) critical splice donor site probably null
R4670:Sbf2 UTSW 7 109,934,606 (GRCm39) missense probably damaging 1.00
R4763:Sbf2 UTSW 7 110,020,124 (GRCm39) missense probably damaging 1.00
R4792:Sbf2 UTSW 7 109,950,817 (GRCm39) missense probably damaging 0.98
R4811:Sbf2 UTSW 7 109,971,742 (GRCm39) missense probably damaging 1.00
R4822:Sbf2 UTSW 7 109,977,146 (GRCm39) intron probably benign
R5110:Sbf2 UTSW 7 109,963,864 (GRCm39) missense probably benign 0.10
R5143:Sbf2 UTSW 7 110,021,747 (GRCm39) nonsense probably null
R5443:Sbf2 UTSW 7 109,977,135 (GRCm39) intron probably benign
R5457:Sbf2 UTSW 7 109,912,037 (GRCm39) missense probably benign
R5641:Sbf2 UTSW 7 110,038,108 (GRCm39) missense probably damaging 1.00
R5915:Sbf2 UTSW 7 109,977,303 (GRCm39) nonsense probably null
R5948:Sbf2 UTSW 7 110,088,492 (GRCm39) missense probably damaging 1.00
R5977:Sbf2 UTSW 7 109,977,193 (GRCm39) missense probably benign 0.00
R6052:Sbf2 UTSW 7 110,040,741 (GRCm39) missense probably damaging 1.00
R6142:Sbf2 UTSW 7 109,948,182 (GRCm39) missense probably damaging 1.00
R6327:Sbf2 UTSW 7 110,040,759 (GRCm39) missense probably damaging 1.00
R6356:Sbf2 UTSW 7 109,971,830 (GRCm39) missense probably damaging 1.00
R6450:Sbf2 UTSW 7 110,062,070 (GRCm39) missense probably damaging 1.00
R6587:Sbf2 UTSW 7 110,040,182 (GRCm39) missense probably damaging 1.00
R6696:Sbf2 UTSW 7 110,159,505 (GRCm39) missense probably benign 0.04
R6986:Sbf2 UTSW 7 109,929,822 (GRCm39) missense probably damaging 0.99
R7147:Sbf2 UTSW 7 110,046,268 (GRCm39) missense probably benign 0.01
R7358:Sbf2 UTSW 7 109,998,555 (GRCm39) missense possibly damaging 0.95
R7414:Sbf2 UTSW 7 109,913,271 (GRCm39) missense possibly damaging 0.89
R7418:Sbf2 UTSW 7 109,965,028 (GRCm39) missense probably damaging 1.00
R7423:Sbf2 UTSW 7 110,038,055 (GRCm39) missense possibly damaging 0.48
R7425:Sbf2 UTSW 7 109,974,984 (GRCm39) nonsense probably null
R7431:Sbf2 UTSW 7 109,950,957 (GRCm39) missense probably damaging 1.00
R7497:Sbf2 UTSW 7 110,213,923 (GRCm39) nonsense probably null
R7556:Sbf2 UTSW 7 109,913,260 (GRCm39) missense probably benign 0.20
R7604:Sbf2 UTSW 7 109,977,274 (GRCm39) missense possibly damaging 0.95
R7707:Sbf2 UTSW 7 109,929,920 (GRCm39) critical splice acceptor site probably null
R7746:Sbf2 UTSW 7 110,040,633 (GRCm39) missense probably benign 0.01
R7812:Sbf2 UTSW 7 110,049,170 (GRCm39) missense possibly damaging 0.84
R7849:Sbf2 UTSW 7 109,971,717 (GRCm39) missense probably damaging 1.00
R8026:Sbf2 UTSW 7 109,934,594 (GRCm39) missense probably damaging 1.00
R8048:Sbf2 UTSW 7 109,914,289 (GRCm39) missense probably benign 0.21
R8305:Sbf2 UTSW 7 109,970,825 (GRCm39) missense possibly damaging 0.79
R8337:Sbf2 UTSW 7 110,040,669 (GRCm39) missense probably benign
R8773:Sbf2 UTSW 7 109,948,202 (GRCm39) missense probably benign
R8786:Sbf2 UTSW 7 110,063,793 (GRCm39) critical splice donor site probably null
R8812:Sbf2 UTSW 7 109,929,069 (GRCm39) missense probably damaging 1.00
R8876:Sbf2 UTSW 7 110,049,146 (GRCm39) missense probably damaging 0.99
R8932:Sbf2 UTSW 7 110,040,155 (GRCm39) critical splice donor site probably null
R8954:Sbf2 UTSW 7 110,038,118 (GRCm39) nonsense probably null
R8991:Sbf2 UTSW 7 109,911,896 (GRCm39) missense probably benign 0.20
R9119:Sbf2 UTSW 7 109,911,292 (GRCm39) missense possibly damaging 0.93
R9310:Sbf2 UTSW 7 109,914,292 (GRCm39) missense possibly damaging 0.58
R9344:Sbf2 UTSW 7 109,940,535 (GRCm39) missense probably benign 0.10
R9346:Sbf2 UTSW 7 109,919,946 (GRCm39) missense probably benign 0.05
R9404:Sbf2 UTSW 7 110,040,702 (GRCm39) missense possibly damaging 0.81
R9406:Sbf2 UTSW 7 110,040,702 (GRCm39) missense possibly damaging 0.81
R9408:Sbf2 UTSW 7 110,040,702 (GRCm39) missense possibly damaging 0.81
R9472:Sbf2 UTSW 7 109,970,798 (GRCm39) missense possibly damaging 0.88
R9554:Sbf2 UTSW 7 110,040,671 (GRCm39) missense probably damaging 1.00
R9562:Sbf2 UTSW 7 110,040,702 (GRCm39) missense possibly damaging 0.81
R9624:Sbf2 UTSW 7 109,963,857 (GRCm39) missense probably damaging 1.00
R9652:Sbf2 UTSW 7 110,040,702 (GRCm39) missense possibly damaging 0.81
R9653:Sbf2 UTSW 7 110,040,702 (GRCm39) missense possibly damaging 0.81
RF005:Sbf2 UTSW 7 109,916,215 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- TGTCTTGTATTTCATTAGGACACACAG -3'
(R):5'- ACACCTGTTTGATTTTAGTGTGTCC -3'

Sequencing Primer
(F):5'- CTAGGTAGCTCAGTCTGGCCTAAAG -3'
(R):5'- GATTTTAGTGTGTCCCTCTGTGCTC -3'
Posted On 2022-10-06