Mutagenetix > Incidental Mutation

Incidental Mutation 'R8301:Rbm6'

639269

Institutional Source

Beutler Lab

Gene Symbol

Rbm6

Ensembl Gene

ENSMUSG00000032582

Gene Name

RNA binding motif protein 6

Synonyms

NY-LU-12, g16, Def-3

MMRRC Submission

067789-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.570) question?

Stock #

R8301 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

107650758-107750436 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to G at 107729993 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Serine at position 218 (R218S)

Ref Sequence

ENSEMBL: ENSMUSP00000138400 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000035201] [ENSMUST00000181986] [ENSMUST00000183032] [ENSMUST00000183035] [ENSMUST00000195866] [ENSMUST00000195883]

AlphaFold

S4R1W5

Predicted Effect

probably damaging
Transcript: ENSMUST00000035201
AA Change: R86S

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000035201
Gene: ENSMUSG00000032582
AA Change: R86S

Domain	Start	End	E-Value	Type
internal_repeat_1	4	42	2.66e-5	PROSPERO
low complexity region	61	87	N/A	INTRINSIC
internal_repeat_1	106	157	2.66e-5	PROSPERO
RRM	325	400	2.67e-2	SMART
Blast:ZnF_RBZ	406	430	2e-11	BLAST
RRM	522	601	1.32e-1	SMART
low complexity region	748	765	N/A	INTRINSIC
ZnF_C2H2	818	843	4.34e0	SMART
low complexity region	864	876	N/A	INTRINSIC
G_patch	912	958	7.87e-2	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000181986

Predicted Effect

probably damaging
Transcript: ENSMUST00000183032
AA Change: R218S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000138400
Gene: ENSMUSG00000032582
AA Change: R218S

Domain	Start	End	E-Value	Type
internal_repeat_1	43	119	2.42e-5	PROSPERO
internal_repeat_2	46	164	3.18e-5	PROSPERO
internal_repeat_1	121	189	2.42e-5	PROSPERO
low complexity region	193	219	N/A	INTRINSIC
internal_repeat_2	224	319	3.18e-5	PROSPERO
RRM	457	532	2.67e-2	SMART
Blast:ZnF_RBZ	538	562	2e-9	BLAST
RRM	654	733	1.32e-1	SMART
low complexity region	880	897	N/A	INTRINSIC
ZnF_C2H2	950	975	4.34e0	SMART
low complexity region	996	1008	N/A	INTRINSIC
G_patch	1044	1090	7.87e-2	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000183035

Predicted Effect

probably benign
Transcript: ENSMUST00000195866

Predicted Effect

probably benign
Transcript: ENSMUST00000195883

SMART Domains

Protein: ENSMUSP00000141953
Gene: ENSMUSG00000032582

Domain	Start	End	E-Value	Type
Blast:ZnF_RBZ	24	48	9e-12	BLAST

Meta Mutation Damage Score

0.1685

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

100% (71/71)

Allele List at MGI

Other mutations in this stock

Total: 72 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310003L06Rik	A	T	5: 88,120,364 (GRCm39)	I374F	probably benign	Het
Ak9	G	A	10: 41,300,712 (GRCm39)	V1108I		Het
Aldh16a1	C	T	7: 44,791,406 (GRCm39)	A790T	possibly damaging	Het
Anks1	A	T	17: 28,278,554 (GRCm39)		probably benign	Het
Antxr2	T	G	5: 98,125,538 (GRCm39)	T240P	probably benign	Het
Arfgef1	A	T	1: 10,250,058 (GRCm39)	M945K	probably damaging	Het
Arhgef17	T	C	7: 100,528,866 (GRCm39)	T1591A	probably benign	Het
Aurka	A	G	2: 172,198,850 (GRCm39)	S374P	probably damaging	Het
Bccip	T	C	7: 133,320,933 (GRCm39)	S236P	probably benign	Het
Cacna1s	T	A	1: 136,001,179 (GRCm39)		probably benign	Het
Calm1	A	G	12: 100,171,944 (GRCm39)	E132G	probably benign	Het
Casz1	A	G	4: 149,030,500 (GRCm39)	D1173G	probably damaging	Het
Cdh17	A	G	4: 11,795,659 (GRCm39)	D413G	probably damaging	Het
Cfap57	A	G	4: 118,450,271 (GRCm39)	I617T	possibly damaging	Het
Creb5	A	G	6: 53,658,018 (GRCm39)	D116G	possibly damaging	Het
Csnka2ip	A	C	16: 64,299,354 (GRCm39)	S337A	unknown	Het
Ddx60	A	G	8: 62,453,631 (GRCm39)	E1250G	probably benign	Het
Dlgap2	T	A	8: 14,873,577 (GRCm39)	S727T	probably benign	Het
Dpy19l1	T	C	9: 24,396,407 (GRCm39)		probably benign	Het
Ebf2	A	G	14: 67,476,431 (GRCm39)	T134A	possibly damaging	Het
Echdc2	A	T	4: 108,030,106 (GRCm39)	M136L	probably benign	Het
Enpp2	A	G	15: 54,714,803 (GRCm39)	F598S	probably benign	Het
Extl3	A	C	14: 65,313,733 (GRCm39)	L483R	probably damaging	Het
Gcat	T	C	15: 78,920,089 (GRCm39)	V227A	possibly damaging	Het
Hsf2	A	G	10: 57,381,442 (GRCm39)	D344G	probably damaging	Het
Ighm	C	T	12: 113,385,165 (GRCm39)	G265D		Het
Igsf9b	T	G	9: 27,246,035 (GRCm39)		probably benign	Het
Ints6	A	G	14: 62,939,902 (GRCm39)	V596A	probably benign	Het
Ints8	T	C	4: 11,246,120 (GRCm39)	E182G	probably damaging	Het
Iqgap2	A	G	13: 95,818,659 (GRCm39)		probably null	Het
Kalrn	G	T	16: 34,177,470 (GRCm39)	Q250K	probably benign	Het
Lrrc1	T	A	9: 77,451,770 (GRCm39)	N46Y	probably damaging	Het
Myl10	G	C	5: 136,726,825 (GRCm39)	V70L	probably benign	Het
Naa50	A	G	16: 43,977,494 (GRCm39)	N74S	probably benign	Het
Neb	T	C	2: 52,178,847 (GRCm39)	N1303S	probably benign	Het
Nfs1	A	T	2: 155,976,413 (GRCm39)	C160*	probably null	Het
Or11g7	T	A	14: 50,691,021 (GRCm39)	S171T	probably benign	Het
Or52s1b	T	G	7: 102,822,280 (GRCm39)	K188T	probably damaging	Het
Or5p52	A	G	7: 107,502,833 (GRCm39)	K303R	probably benign	Het
Or6c76	T	C	10: 129,612,709 (GRCm39)	S309P	probably benign	Het
Orm2	T	C	4: 63,281,263 (GRCm39)	F67S	possibly damaging	Het
Pex5	A	G	6: 124,382,142 (GRCm39)	S180P	probably benign	Het
Phf14	G	C	6: 11,992,061 (GRCm39)	G746R	probably damaging	Het
Pkm	T	A	9: 59,575,914 (GRCm39)	V110E	probably damaging	Het
Plekha6	T	G	1: 133,192,425 (GRCm39)	N78K	probably damaging	Het
Plxna2	G	A	1: 194,472,483 (GRCm39)	V1076I	probably benign	Het
Polq	C	A	16: 36,882,181 (GRCm39)	D1448E	probably damaging	Het
Pot1b	T	C	17: 55,994,895 (GRCm39)	T256A	probably benign	Het
Prkch	C	T	12: 73,749,538 (GRCm39)	T377I	possibly damaging	Het
Prl3c1	A	C	13: 27,383,168 (GRCm39)		probably benign	Het
Prl7b1	A	C	13: 27,786,755 (GRCm39)	V158G	possibly damaging	Het
Prss22	T	C	17: 24,212,955 (GRCm39)	S261G	probably damaging	Het
Psd	T	C	19: 46,309,541 (GRCm39)		probably benign	Het
Psg18	A	T	7: 18,087,302 (GRCm39)	Y119N	probably damaging	Het
Rnf213	T	A	11: 119,325,568 (GRCm39)	S1491T		Het
Rsf1	T	C	7: 97,311,132 (GRCm39)	S621P		Het
Runx1	C	A	16: 92,402,544 (GRCm39)	*466L	probably null	Het
Samd4	A	G	14: 47,254,135 (GRCm39)	I200V	probably benign	Het
Sdsl	C	T	5: 120,597,584 (GRCm39)	C241Y	probably benign	Het
Selenon	T	C	4: 134,278,725 (GRCm39)		probably benign	Het
Setx	C	T	2: 29,035,702 (GRCm39)	P729L	possibly damaging	Het
Sf1	C	T	19: 6,418,396 (GRCm39)	Q55*	probably null	Het
Slc12a5	A	T	2: 164,835,611 (GRCm39)	N833I	probably damaging	Het
Slc1a4	T	C	11: 20,282,286 (GRCm39)	R63G	probably damaging	Het
Tmeff2	G	T	1: 51,220,996 (GRCm39)	A324S	probably benign	Het
Tmem217	A	G	17: 29,745,466 (GRCm39)	I88T	possibly damaging	Het
Tnfsf8	A	T	4: 63,779,115 (GRCm39)	I61N	probably benign	Het
Tpbgl	G	T	7: 99,274,774 (GRCm39)	A361E	probably damaging	Het
Trhde	T	A	10: 114,322,911 (GRCm39)	E667V	probably benign	Het
Unc13b	A	G	4: 43,263,568 (GRCm39)	T1598A	probably benign	Het
Vmn2r73	A	T	7: 85,507,510 (GRCm39)	C601S	probably benign	Het
Zfp873	C	A	10: 81,896,713 (GRCm39)	H481Q	probably damaging	Het

Other mutations in Rbm6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01380:Rbm6	APN	9	107,665,548 (GRCm39)	missense	probably damaging	1.00
IGL01647:Rbm6	APN	9	107,730,081 (GRCm39)	missense	probably benign	0.13
IGL01872:Rbm6	APN	9	107,660,914 (GRCm39)	missense	probably damaging	0.99
IGL02402:Rbm6	APN	9	107,730,051 (GRCm39)	missense	probably damaging	1.00
IGL03024:Rbm6	APN	9	107,664,567 (GRCm39)	missense	probably damaging	0.97
IGL03025:Rbm6	APN	9	107,651,918 (GRCm39)	missense	possibly damaging	0.76
FR4737:Rbm6	UTSW	9	107,659,954 (GRCm39)	frame shift	probably null
G1Funyon:Rbm6	UTSW	9	107,729,993 (GRCm39)	missense	probably damaging	1.00
PIT4402001:Rbm6	UTSW	9	107,665,049 (GRCm39)	missense	probably damaging	1.00
R0511:Rbm6	UTSW	9	107,724,488 (GRCm39)	nonsense	probably null
R1666:Rbm6	UTSW	9	107,669,055 (GRCm39)	missense	probably benign	0.15
R1927:Rbm6	UTSW	9	107,730,102 (GRCm39)	missense	probably damaging	1.00
R2173:Rbm6	UTSW	9	107,729,390 (GRCm39)	missense	possibly damaging	0.79
R2262:Rbm6	UTSW	9	107,668,289 (GRCm39)	missense	probably damaging	1.00
R2439:Rbm6	UTSW	9	107,656,796 (GRCm39)	missense	probably damaging	1.00
R2566:Rbm6	UTSW	9	107,669,197 (GRCm39)	missense	possibly damaging	0.60
R2878:Rbm6	UTSW	9	107,729,649 (GRCm39)	missense	probably damaging	1.00
R4342:Rbm6	UTSW	9	107,724,446 (GRCm39)	intron	probably benign
R4783:Rbm6	UTSW	9	107,730,102 (GRCm39)	missense	probably damaging	1.00
R4785:Rbm6	UTSW	9	107,664,551 (GRCm39)	missense	probably benign	0.06
R5205:Rbm6	UTSW	9	107,665,542 (GRCm39)	missense	probably benign	0.08
R5253:Rbm6	UTSW	9	107,729,856 (GRCm39)	missense	probably damaging	1.00
R5279:Rbm6	UTSW	9	107,655,213 (GRCm39)	missense	probably benign	0.00
R5356:Rbm6	UTSW	9	107,729,865 (GRCm39)	missense	probably damaging	1.00
R6289:Rbm6	UTSW	9	107,655,147 (GRCm39)	missense	probably damaging	1.00
R6328:Rbm6	UTSW	9	107,664,458 (GRCm39)	missense	probably benign	0.00
R6564:Rbm6	UTSW	9	107,710,697 (GRCm39)	missense	probably damaging	1.00
R6887:Rbm6	UTSW	9	107,729,430 (GRCm39)	missense	probably damaging	1.00
R6978:Rbm6	UTSW	9	107,729,774 (GRCm39)	splice site	probably null
R7139:Rbm6	UTSW	9	107,730,410 (GRCm39)	missense	probably damaging	1.00
R7240:Rbm6	UTSW	9	107,730,095 (GRCm39)	missense	probably damaging	1.00
R7330:Rbm6	UTSW	9	107,668,244 (GRCm39)	missense	possibly damaging	0.77
R7397:Rbm6	UTSW	9	107,729,718 (GRCm39)	missense	probably benign
R7590:Rbm6	UTSW	9	107,668,949 (GRCm39)	critical splice donor site	probably null
R7829:Rbm6	UTSW	9	107,729,905 (GRCm39)	missense	probably damaging	1.00
R8405:Rbm6	UTSW	9	107,730,016 (GRCm39)	missense	probably benign	0.01
R8784:Rbm6	UTSW	9	107,665,337 (GRCm39)	missense	possibly damaging	0.71
R8935:Rbm6	UTSW	9	107,677,945 (GRCm39)	missense	probably benign	0.02
R9036:Rbm6	UTSW	9	107,660,911 (GRCm39)	missense	probably damaging	1.00
R9095:Rbm6	UTSW	9	107,669,089 (GRCm39)	nonsense	probably null
R9227:Rbm6	UTSW	9	107,664,498 (GRCm39)	missense	probably benign
R9276:Rbm6	UTSW	9	107,660,926 (GRCm39)	missense	probably damaging	1.00
R9482:Rbm6	UTSW	9	107,669,208 (GRCm39)	missense	possibly damaging	0.60
R9656:Rbm6	UTSW	9	107,656,778 (GRCm39)	missense	probably damaging	0.99
Z1191:Rbm6	UTSW	9	107,655,171 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- TTTTGGATCCATAGGAGGCATC -3'
(R):5'- ACAGGGATTCTCATACTGTTGAC -3'

Sequencing Primer
(F):5'- CTTTAAATTCCATACAAGGTCCTACC -3'
(R):5'- GACTTTAGAAGTAGAGATGTCCCTCC -3'

Posted On

2020-07-28