Mutagenetix > Incidental Mutation

Incidental Mutation 'R8812:Clip4'

672527

Institutional Source

Beutler Lab

Gene Symbol

Clip4

Ensembl Gene

ENSMUSG00000024059

Gene Name

CAP-GLY domain containing linker protein family, member 4

Synonyms

4833417L20Rik, 1700074B05Rik, 5830409B12Rik, Rsnl2, 1700024K14Rik

MMRRC Submission

068647-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.142) question?

Stock #

R8812 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

72076674-72171205 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

A to T at 72107800 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Stop codon at position 94 (K94*)

Ref Sequence

ENSEMBL: ENSMUSP00000024854 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000024854] [ENSMUST00000229288] [ENSMUST00000229304] [ENSMUST00000229874] [ENSMUST00000229952] [ENSMUST00000230305] [ENSMUST00000230333] [ENSMUST00000230427] [ENSMUST00000230747] [ENSMUST00000230749] [ENSMUST00000231105]

AlphaFold

Q8CI96

PDB Structure

Solution structure of the 1st CAP-Gly domain in mouse 1700024K14Rik hypothetical protein [SOLUTION NMR]
Solution structure of the 3rd CAP-Gly domain in mouse 1700024K14Rik hypothetical protein [SOLUTION NMR]

Predicted Effect

probably null
Transcript: ENSMUST00000024854
AA Change: K94*

SMART Domains

Protein: ENSMUSP00000024854
Gene: ENSMUSG00000024059
AA Change: K94*

Domain	Start	End	E-Value	Type
ANK	106	144	4.58e2	SMART
ANK	149	180	3.26e0	SMART
ANK	186	215	3.26e0	SMART
CAP_GLY	285	350	6.63e-34	SMART
low complexity region	358	371	N/A	INTRINSIC
low complexity region	389	403	N/A	INTRINSIC
low complexity region	423	432	N/A	INTRINSIC
low complexity region	440	461	N/A	INTRINSIC
low complexity region	469	478	N/A	INTRINSIC
CAP_GLY	486	551	5.52e-31	SMART
low complexity region	575	586	N/A	INTRINSIC
low complexity region	598	612	N/A	INTRINSIC
CAP_GLY	624	690	5.65e-28	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000229288
AA Change: K94*

Predicted Effect

probably null
Transcript: ENSMUST00000229304
AA Change: K94*

Predicted Effect

probably null
Transcript: ENSMUST00000229874
AA Change: K94*

Predicted Effect

probably null
Transcript: ENSMUST00000229952
AA Change: K94*

Predicted Effect

probably null
Transcript: ENSMUST00000230305
AA Change: K94*

Predicted Effect

probably null
Transcript: ENSMUST00000230333
AA Change: K94*

Predicted Effect

probably null
Transcript: ENSMUST00000230427
AA Change: K94*

Predicted Effect

probably null
Transcript: ENSMUST00000230747
AA Change: K94*

Predicted Effect

probably null
Transcript: ENSMUST00000230749
AA Change: K94*

Predicted Effect

probably null
Transcript: ENSMUST00000231105
AA Change: K94*

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.2%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 81 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2210408I21Rik	C	A	13: 77,480,471 (GRCm39)	P1167Q	probably damaging	Het
Abtb3	A	G	10: 85,463,113 (GRCm39)	Q626R	probably damaging	Het
Adcy10	A	T	1: 165,378,867 (GRCm39)	Q885H	probably damaging	Het
Alkal2	C	T	12: 30,940,055 (GRCm39)	L139F	probably damaging	Het
Ankrd17	A	T	5: 90,441,062 (GRCm39)	M439K	probably benign	Het
Arl11	C	A	14: 61,548,422 (GRCm39)	Y77*	probably null	Het
Bcas3	T	C	11: 85,449,973 (GRCm39)	Y669H	probably benign	Het
Bpifb3	C	T	2: 153,764,516 (GRCm39)	A136V	probably benign	Het
Ccne2	A	G	4: 11,202,279 (GRCm39)	T345A	probably benign	Het
Ciz1	T	C	2: 32,254,286 (GRCm39)	S76P	probably benign	Het
Cthrc1	G	A	15: 38,947,866 (GRCm39)	R195H	probably damaging	Het
Ddx31	T	C	2: 28,730,816 (GRCm39)		probably benign	Het
Elf2	T	A	3: 51,174,188 (GRCm39)	D113V	possibly damaging	Het
Esrrb	A	G	12: 86,535,324 (GRCm39)	N155S	probably benign	Het
Flnb	A	G	14: 7,887,624 (GRCm38)	D478G	probably benign	Het
Galm	T	A	17: 80,435,215 (GRCm39)	L24H	probably damaging	Het
Gask1b	T	C	3: 79,816,078 (GRCm39)	S363P	possibly damaging	Het
Gon4l	G	A	3: 88,802,314 (GRCm39)	G975D	possibly damaging	Het
Hspbp1	T	G	7: 4,667,783 (GRCm39)	M237L	probably benign	Het
Ighv1-62-1	A	T	12: 115,350,367 (GRCm39)	M100K	probably damaging	Het
Ipo8	A	T	6: 148,676,575 (GRCm39)	D971E	possibly damaging	Het
Itgax	C	T	7: 127,732,979 (GRCm39)	A286V	probably damaging	Het
Jpt2	T	C	17: 25,179,578 (GRCm39)	Q3R	probably benign	Het
Katnip	A	C	7: 125,396,867 (GRCm39)	R309S	probably benign	Het
Klrg2	A	C	6: 38,613,838 (GRCm39)	L55R	probably damaging	Het
Lrp6	T	A	6: 134,433,141 (GRCm39)	M1397L	probably benign	Het
Lrrc31	T	A	3: 30,733,328 (GRCm39)	Q462L	probably benign	Het
Lyg2	T	A	1: 37,949,054 (GRCm39)	I103F	probably damaging	Het
Map10	T	C	8: 126,396,664 (GRCm39)	V19A	probably damaging	Het
Map1b	T	A	13: 99,569,323 (GRCm39)	M1133L	unknown	Het
Mrgpra4	A	G	7: 47,631,481 (GRCm39)	V40A	probably benign	Het
Myh1	G	A	11: 67,099,967 (GRCm39)	G626R	probably benign	Het
Myo9a	T	C	9: 59,687,030 (GRCm39)	V45A	probably benign	Het
Ncdn	A	G	4: 126,638,905 (GRCm39)	F638S	possibly damaging	Het
Ncs1	T	A	2: 31,174,213 (GRCm39)	M121K	probably damaging	Het
Nf1	T	C	11: 79,437,180 (GRCm39)	V16A	probably damaging	Het
Nktr	T	A	9: 121,579,317 (GRCm39)	D1128E	unknown	Het
Nup205	T	G	6: 35,191,269 (GRCm39)	L1000R	probably damaging	Het
Obscn	T	C	11: 58,925,921 (GRCm39)	E5604G	probably damaging	Het
Or1p4-ps1	T	A	11: 74,208,534 (GRCm39)	S228T	unknown	Het
Or2p2	T	C	13: 21,257,220 (GRCm39)	N84D	probably damaging	Het
Or4a68	A	G	2: 89,270,209 (GRCm39)	V138A	probably benign	Het
Or4c35	G	T	2: 89,808,715 (GRCm39)	A198S	possibly damaging	Het
Or51ah3	G	T	7: 103,209,816 (GRCm39)	C44F	probably benign	Het
Or5b96	A	T	19: 12,867,560 (GRCm39)	V127E	probably damaging	Het
Or7g12	A	G	9: 18,899,812 (GRCm39)	H176R	possibly damaging	Het
Ovch2	T	A	7: 107,392,462 (GRCm39)	I294F	probably damaging	Het
Ovch2	A	T	7: 107,393,251 (GRCm39)	C207*	probably null	Het
P3h2	T	A	16: 25,801,467 (GRCm39)	Y397F	possibly damaging	Het
Pappa	A	T	4: 65,123,166 (GRCm39)	I834F	possibly damaging	Het
Pcdha11	T	C	18: 37,140,716 (GRCm39)	S782P	probably benign	Het
Pex1	T	C	5: 3,681,614 (GRCm39)	V980A	probably benign	Het
Pik3c2a	G	T	7: 115,951,112 (GRCm39)	L1258I	probably damaging	Het
Pmp22	T	A	11: 63,049,239 (GRCm39)	*161R	probably null	Het
Ppp1r26	T	A	2: 28,341,192 (GRCm39)	M274K	probably benign	Het
Ppp6r2	T	C	15: 89,167,275 (GRCm39)	V830A	probably benign	Het
Pramel34	T	C	5: 93,785,660 (GRCm39)	T207A	possibly damaging	Het
Prss1	T	A	6: 41,439,520 (GRCm39)	N84K	probably benign	Het
Rab3il1	G	A	19: 10,004,141 (GRCm39)	A18T	probably damaging	Het
Sbf2	A	T	7: 109,929,069 (GRCm39)	S1471T	probably damaging	Het
Setdb1	T	A	3: 95,263,371 (GRCm39)	D45V	probably damaging	Het
Sik3	G	T	9: 46,089,811 (GRCm39)	V275L	probably benign	Het
Skint6	C	A	4: 112,846,149 (GRCm39)	M659I	probably benign	Het
Slc24a1	T	A	9: 64,835,985 (GRCm39)	D714V	unknown	Het
Slc26a5	T	A	5: 22,018,880 (GRCm39)	D653V	probably damaging	Het
Snrnp27	A	T	6: 86,653,196 (GRCm39)	C141S	probably benign	Het
Stradb	A	G	1: 59,033,478 (GRCm39)	I380M	probably benign	Het
Sult1e1	T	C	5: 87,735,501 (GRCm39)	Y59C	probably benign	Het
Tas2r122	C	T	6: 132,688,702 (GRCm39)	A64T	probably benign	Het
Tep1	C	T	14: 51,074,589 (GRCm39)	C1812Y	probably damaging	Het
Tln2	C	A	9: 67,128,693 (GRCm39)	E1465D	possibly damaging	Het
Trio	A	T	15: 27,905,311 (GRCm39)	C152S	unknown	Het
Tro	G	A	X: 149,438,555 (GRCm39)	S34L	unknown	Het
Vmn1r15	A	G	6: 57,235,123 (GRCm39)		probably benign	Het
Vmn1r19	A	G	6: 57,381,436 (GRCm39)		probably benign	Het
Vmn1r75	A	G	7: 11,614,630 (GRCm39)	T121A	possibly damaging	Het
Vmn2r32	A	G	7: 7,477,669 (GRCm39)	F241L	probably damaging	Het
Vmn2r66	A	G	7: 84,654,893 (GRCm39)	L472P	probably damaging	Het
Ylpm1	G	T	12: 85,043,566 (GRCm39)	W101C	unknown	Het
Zdbf2	C	A	1: 63,347,272 (GRCm39)	H1884N	probably benign	Het
Zfp1005	T	A	2: 150,109,624 (GRCm39)	C105S	possibly damaging	Het

Other mutations in Clip4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00417:Clip4	APN	17	72,156,937 (GRCm39)	missense	probably damaging	1.00
IGL01011:Clip4	APN	17	72,156,934 (GRCm39)	missense	probably benign	0.02
IGL01086:Clip4	APN	17	72,131,789 (GRCm39)	missense	probably benign	0.00
IGL01712:Clip4	APN	17	72,106,036 (GRCm39)	missense	probably damaging	1.00
IGL01833:Clip4	APN	17	72,134,785 (GRCm39)	unclassified	probably benign
IGL02150:Clip4	APN	17	72,106,071 (GRCm39)	missense	probably damaging	1.00
IGL02378:Clip4	APN	17	72,144,721 (GRCm39)	missense	possibly damaging	0.94
IGL02597:Clip4	APN	17	72,156,965 (GRCm39)	splice site	probably benign
IGL02676:Clip4	APN	17	72,135,616 (GRCm39)	missense	probably damaging	1.00
PIT4243001:Clip4	UTSW	17	72,113,723 (GRCm39)	missense	probably damaging	0.98
R0525:Clip4	UTSW	17	72,106,093 (GRCm39)	critical splice donor site	probably null
R0737:Clip4	UTSW	17	72,144,694 (GRCm39)	nonsense	probably null
R1791:Clip4	UTSW	17	72,108,937 (GRCm39)	splice site	probably benign
R1908:Clip4	UTSW	17	72,144,744 (GRCm39)	missense	probably damaging	1.00
R2290:Clip4	UTSW	17	72,117,948 (GRCm39)	missense	possibly damaging	0.96
R3701:Clip4	UTSW	17	72,106,003 (GRCm39)	missense	probably damaging	0.96
R4001:Clip4	UTSW	17	72,106,071 (GRCm39)	missense	probably damaging	1.00
R4013:Clip4	UTSW	17	72,163,541 (GRCm39)	nonsense	probably null
R4589:Clip4	UTSW	17	72,117,862 (GRCm39)	nonsense	probably null
R4837:Clip4	UTSW	17	72,141,217 (GRCm39)	missense	probably damaging	1.00
R5174:Clip4	UTSW	17	72,117,957 (GRCm39)	missense	probably damaging	1.00
R5239:Clip4	UTSW	17	72,106,072 (GRCm39)	missense	probably damaging	1.00
R5298:Clip4	UTSW	17	72,141,220 (GRCm39)	missense	probably damaging	1.00
R5535:Clip4	UTSW	17	72,138,257 (GRCm39)	missense	probably benign
R5667:Clip4	UTSW	17	72,096,878 (GRCm39)	start codon destroyed	probably damaging	1.00
R5671:Clip4	UTSW	17	72,096,878 (GRCm39)	start codon destroyed	probably damaging	1.00
R5730:Clip4	UTSW	17	72,117,954 (GRCm39)	missense	probably damaging	1.00
R5768:Clip4	UTSW	17	72,113,494 (GRCm39)	splice site	probably null
R5913:Clip4	UTSW	17	72,131,760 (GRCm39)	missense	probably benign	0.00
R5974:Clip4	UTSW	17	72,138,242 (GRCm39)	missense	probably damaging	1.00
R5996:Clip4	UTSW	17	72,163,305 (GRCm39)	missense	probably damaging	0.99
R6176:Clip4	UTSW	17	72,113,628 (GRCm39)	nonsense	probably null
R6371:Clip4	UTSW	17	72,163,459 (GRCm39)	missense	probably damaging	1.00
R6386:Clip4	UTSW	17	72,141,189 (GRCm39)	nonsense	probably null
R7296:Clip4	UTSW	17	72,096,996 (GRCm39)	missense	probably damaging	0.99
R7546:Clip4	UTSW	17	72,135,697 (GRCm39)	missense	possibly damaging	0.85
R7548:Clip4	UTSW	17	72,096,963 (GRCm39)	missense	probably benign
R7616:Clip4	UTSW	17	72,141,268 (GRCm39)	missense	probably benign	0.00
R8054:Clip4	UTSW	17	72,141,268 (GRCm39)	missense	possibly damaging	0.68
R8056:Clip4	UTSW	17	72,110,587 (GRCm39)	missense	probably damaging	1.00
R8486:Clip4	UTSW	17	72,170,839 (GRCm39)	utr 3 prime	probably benign
R8697:Clip4	UTSW	17	72,163,270 (GRCm39)	missense	possibly damaging	0.80
R8929:Clip4	UTSW	17	72,138,203 (GRCm39)	missense	probably damaging	1.00
R8942:Clip4	UTSW	17	72,170,768 (GRCm39)	missense	probably benign	0.03
R8985:Clip4	UTSW	17	72,113,527 (GRCm39)	missense	probably damaging	1.00
R9100:Clip4	UTSW	17	72,117,884 (GRCm39)	missense	probably damaging	1.00
R9198:Clip4	UTSW	17	72,117,884 (GRCm39)	missense	probably damaging	1.00
R9200:Clip4	UTSW	17	72,117,884 (GRCm39)	missense	probably damaging	1.00
R9201:Clip4	UTSW	17	72,117,884 (GRCm39)	missense	probably damaging	1.00
R9202:Clip4	UTSW	17	72,117,884 (GRCm39)	missense	probably damaging	1.00
R9640:Clip4	UTSW	17	72,163,264 (GRCm39)	missense	possibly damaging	0.86
R9753:Clip4	UTSW	17	72,106,068 (GRCm39)	missense	probably benign	0.31
Z1177:Clip4	UTSW	17	72,106,092 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- GGGAATTTCCTGACCAGTGTTG -3'
(R):5'- CCTCACCTACTTGGCTGATG -3'

Sequencing Primer
(F):5'- TGTTTGGCTTTGGAGTAGAGGAATG -3'
(R):5'- CTGATGGTCAGTGGGGCAC -3'

Posted On

2021-04-30