Incidental Mutation 'R9234:Vmn2r59'
ID |
700979 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Vmn2r59
|
Ensembl Gene |
ENSMUSG00000092032 |
Gene Name |
vomeronasal 2, receptor 59 |
Synonyms |
EG628444 |
MMRRC Submission |
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.079)
|
Stock # |
R9234 (G1)
|
Quality Score |
225.009 |
Status
|
Not validated
|
Chromosome |
7 |
Chromosomal Location |
41661216-41708405 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to G
at 41661907 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Isoleucine to Threonine
at position 636
(I636T)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000131856
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000168489]
|
AlphaFold |
E9PUT5 |
Predicted Effect |
possibly damaging
Transcript: ENSMUST00000168489
AA Change: I636T
PolyPhen 2
Score 0.670 (Sensitivity: 0.86; Specificity: 0.91)
|
SMART Domains |
Protein: ENSMUSP00000131856 Gene: ENSMUSG00000092032 AA Change: I636T
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
17 |
N/A |
INTRINSIC |
Pfam:ANF_receptor
|
77 |
471 |
1.8e-44 |
PFAM |
Pfam:NCD3G
|
514 |
567 |
4.3e-23 |
PFAM |
Pfam:7tm_3
|
600 |
835 |
5.4e-53 |
PFAM |
|
Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.7%
- 20x: 99.0%
|
Validation Efficiency |
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 64 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
6430550D23Rik |
A |
G |
2: 155,845,798 (GRCm39) |
Y20H |
probably benign |
Het |
Arid5b |
A |
G |
10: 67,964,628 (GRCm39) |
F348L |
possibly damaging |
Het |
Bms1 |
C |
A |
6: 118,375,044 (GRCm39) |
A777S |
probably damaging |
Het |
C2cd3 |
A |
G |
7: 100,049,012 (GRCm39) |
Y61C |
|
Het |
Caprin2 |
A |
T |
6: 148,744,337 (GRCm39) |
Y1029* |
probably null |
Het |
Casp1 |
A |
T |
9: 5,303,128 (GRCm39) |
D194V |
probably benign |
Het |
Crkl |
A |
G |
16: 17,286,822 (GRCm39) |
E126G |
probably damaging |
Het |
Crp |
A |
T |
1: 172,526,413 (GRCm39) |
D166V |
probably damaging |
Het |
Dnah10 |
A |
C |
5: 124,818,989 (GRCm39) |
D425A |
possibly damaging |
Het |
Dnah11 |
A |
T |
12: 117,951,095 (GRCm39) |
L3071Q |
probably damaging |
Het |
Dnah9 |
T |
A |
11: 65,924,751 (GRCm39) |
I2168F |
possibly damaging |
Het |
Elp3 |
T |
A |
14: 65,788,920 (GRCm39) |
I388F |
probably damaging |
Het |
Espn |
C |
A |
4: 152,217,380 (GRCm39) |
|
probably null |
Het |
Fbrsl1 |
G |
T |
5: 110,511,250 (GRCm39) |
F504L |
probably benign |
Het |
Fzd9 |
A |
C |
5: 135,279,540 (GRCm39) |
M115R |
probably damaging |
Het |
Git2 |
A |
T |
5: 114,899,682 (GRCm39) |
Y224N |
possibly damaging |
Het |
Gm9195 |
A |
T |
14: 72,695,786 (GRCm39) |
Y1415* |
probably null |
Het |
Gnpat |
T |
A |
8: 125,610,179 (GRCm39) |
L454Q |
probably damaging |
Het |
Grm5 |
C |
T |
7: 87,723,440 (GRCm39) |
P577S |
probably damaging |
Het |
Hfm1 |
T |
C |
5: 107,041,334 (GRCm39) |
N683S |
probably benign |
Het |
Hps4 |
G |
A |
5: 112,525,905 (GRCm39) |
S642N |
possibly damaging |
Het |
Leng8 |
C |
A |
7: 4,145,247 (GRCm39) |
P216T |
probably damaging |
Het |
Letm2 |
C |
A |
8: 26,084,102 (GRCm39) |
R43L |
probably benign |
Het |
Lims2 |
A |
T |
18: 32,090,943 (GRCm39) |
Y309F |
probably benign |
Het |
Llgl1 |
T |
C |
11: 60,600,956 (GRCm39) |
|
probably null |
Het |
Ltn1 |
A |
T |
16: 87,194,089 (GRCm39) |
D1417E |
probably damaging |
Het |
Map4k4 |
T |
A |
1: 40,029,261 (GRCm39) |
N345K |
unknown |
Het |
Mapre2 |
T |
C |
18: 23,937,236 (GRCm39) |
I26T |
probably benign |
Het |
Nfe2 |
A |
G |
15: 103,159,636 (GRCm39) |
|
probably benign |
Het |
Nlgn3 |
T |
C |
X: 100,352,390 (GRCm39) |
V179A |
probably damaging |
Het |
Ntrk1 |
A |
G |
3: 87,695,622 (GRCm39) |
|
probably null |
Het |
Or51b6b |
T |
A |
7: 103,309,950 (GRCm39) |
Y169F |
possibly damaging |
Het |
Or52e18 |
A |
G |
7: 104,609,651 (GRCm39) |
F96S |
probably damaging |
Het |
Or5h19 |
T |
C |
16: 58,856,789 (GRCm39) |
N104D |
probably benign |
Het |
Otud7b |
G |
T |
3: 96,047,771 (GRCm39) |
Q43H |
probably damaging |
Het |
Pcdhb5 |
T |
C |
18: 37,453,695 (GRCm39) |
V25A |
probably benign |
Het |
Pcolce2 |
A |
G |
9: 95,560,439 (GRCm39) |
T163A |
probably benign |
Het |
Pdgfra |
T |
A |
5: 75,324,262 (GRCm39) |
V39E |
possibly damaging |
Het |
Pdgfrb |
T |
A |
18: 61,194,300 (GRCm39) |
W26R |
probably null |
Het |
Pigp |
T |
A |
16: 94,165,522 (GRCm39) |
*206Y |
probably null |
Het |
Pip5kl1 |
G |
T |
2: 32,468,211 (GRCm39) |
G126C |
probably benign |
Het |
Plekhg2 |
G |
T |
7: 28,064,215 (GRCm39) |
T442K |
probably benign |
Het |
Prmt5 |
A |
T |
14: 54,748,674 (GRCm39) |
S375T |
possibly damaging |
Het |
Rnf213 |
T |
A |
11: 119,340,943 (GRCm39) |
M3529K |
|
Het |
Ror2 |
C |
A |
13: 53,265,374 (GRCm39) |
D573Y |
probably damaging |
Het |
Shank1 |
A |
G |
7: 43,962,579 (GRCm39) |
T98A |
unknown |
Het |
Shcbp1 |
A |
T |
8: 4,798,800 (GRCm39) |
I373K |
possibly damaging |
Het |
Slc25a42 |
A |
G |
8: 70,642,736 (GRCm39) |
S64P |
probably damaging |
Het |
Smco3 |
T |
A |
6: 136,808,410 (GRCm39) |
I155F |
probably damaging |
Het |
Snx4 |
C |
A |
16: 33,087,161 (GRCm39) |
S102* |
probably null |
Het |
Snx4 |
T |
A |
16: 33,108,069 (GRCm39) |
S288T |
probably benign |
Het |
Socs4 |
A |
G |
14: 47,527,716 (GRCm39) |
N217S |
probably benign |
Het |
Tatdn2 |
G |
A |
6: 113,679,683 (GRCm39) |
|
probably null |
Het |
Tmprss2 |
A |
G |
16: 97,379,821 (GRCm39) |
Y160H |
probably damaging |
Het |
Trim37 |
T |
C |
11: 87,036,393 (GRCm39) |
I158T |
possibly damaging |
Het |
Trip11 |
C |
T |
12: 101,811,990 (GRCm39) |
|
probably null |
Het |
Ubr3 |
G |
A |
2: 69,727,990 (GRCm39) |
A118T |
probably benign |
Het |
Ubxn7 |
T |
C |
16: 32,178,895 (GRCm39) |
|
probably null |
Het |
Unc5cl |
C |
T |
17: 48,770,658 (GRCm39) |
H369Y |
probably damaging |
Het |
Unc5d |
A |
T |
8: 29,250,877 (GRCm39) |
N263K |
probably damaging |
Het |
Vps13d |
G |
T |
4: 144,875,792 (GRCm39) |
Q1578K |
|
Het |
Wnk2 |
T |
C |
13: 49,224,274 (GRCm39) |
D1171G |
probably damaging |
Het |
Zfpm2 |
A |
G |
15: 40,966,470 (GRCm39) |
Y985C |
probably damaging |
Het |
Zpbp2 |
A |
T |
11: 98,443,398 (GRCm39) |
N77I |
probably damaging |
Het |
|
Other mutations in Vmn2r59 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00088:Vmn2r59
|
APN |
7 |
41,661,488 (GRCm39) |
missense |
possibly damaging |
0.91 |
IGL01432:Vmn2r59
|
APN |
7 |
41,661,983 (GRCm39) |
missense |
possibly damaging |
0.82 |
IGL02119:Vmn2r59
|
APN |
7 |
41,695,593 (GRCm39) |
missense |
probably benign |
0.36 |
IGL02216:Vmn2r59
|
APN |
7 |
41,661,817 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02327:Vmn2r59
|
APN |
7 |
41,661,655 (GRCm39) |
missense |
probably benign |
|
IGL03346:Vmn2r59
|
APN |
7 |
41,693,253 (GRCm39) |
missense |
probably benign |
0.00 |
IGL03411:Vmn2r59
|
APN |
7 |
41,708,340 (GRCm39) |
missense |
probably benign |
0.43 |
IGL03412:Vmn2r59
|
APN |
7 |
41,661,862 (GRCm39) |
missense |
probably benign |
|
PIT4366001:Vmn2r59
|
UTSW |
7 |
41,695,205 (GRCm39) |
missense |
possibly damaging |
0.91 |
R0068:Vmn2r59
|
UTSW |
7 |
41,695,725 (GRCm39) |
missense |
probably damaging |
0.99 |
R0094:Vmn2r59
|
UTSW |
7 |
41,661,722 (GRCm39) |
missense |
probably benign |
0.07 |
R0179:Vmn2r59
|
UTSW |
7 |
41,696,432 (GRCm39) |
nonsense |
probably null |
|
R0370:Vmn2r59
|
UTSW |
7 |
41,662,150 (GRCm39) |
missense |
probably benign |
0.23 |
R0412:Vmn2r59
|
UTSW |
7 |
41,695,916 (GRCm39) |
splice site |
probably benign |
|
R0465:Vmn2r59
|
UTSW |
7 |
41,696,332 (GRCm39) |
missense |
probably benign |
|
R0487:Vmn2r59
|
UTSW |
7 |
41,696,528 (GRCm39) |
nonsense |
probably null |
|
R0576:Vmn2r59
|
UTSW |
7 |
41,696,529 (GRCm39) |
missense |
probably benign |
0.01 |
R0632:Vmn2r59
|
UTSW |
7 |
41,708,308 (GRCm39) |
missense |
probably damaging |
1.00 |
R1356:Vmn2r59
|
UTSW |
7 |
41,661,218 (GRCm39) |
makesense |
probably null |
|
R1387:Vmn2r59
|
UTSW |
7 |
41,695,521 (GRCm39) |
missense |
probably damaging |
1.00 |
R1388:Vmn2r59
|
UTSW |
7 |
41,695,133 (GRCm39) |
missense |
probably benign |
0.01 |
R1435:Vmn2r59
|
UTSW |
7 |
41,695,629 (GRCm39) |
missense |
possibly damaging |
0.50 |
R1750:Vmn2r59
|
UTSW |
7 |
41,695,251 (GRCm39) |
missense |
possibly damaging |
0.50 |
R2020:Vmn2r59
|
UTSW |
7 |
41,693,203 (GRCm39) |
missense |
probably damaging |
1.00 |
R2249:Vmn2r59
|
UTSW |
7 |
41,708,326 (GRCm39) |
missense |
probably benign |
0.00 |
R2256:Vmn2r59
|
UTSW |
7 |
41,661,669 (GRCm39) |
nonsense |
probably null |
|
R2257:Vmn2r59
|
UTSW |
7 |
41,661,669 (GRCm39) |
nonsense |
probably null |
|
R2441:Vmn2r59
|
UTSW |
7 |
41,695,570 (GRCm39) |
missense |
probably benign |
0.00 |
R2511:Vmn2r59
|
UTSW |
7 |
41,693,190 (GRCm39) |
missense |
probably damaging |
1.00 |
R2860:Vmn2r59
|
UTSW |
7 |
41,696,427 (GRCm39) |
missense |
possibly damaging |
0.79 |
R2861:Vmn2r59
|
UTSW |
7 |
41,696,427 (GRCm39) |
missense |
possibly damaging |
0.79 |
R3690:Vmn2r59
|
UTSW |
7 |
41,661,370 (GRCm39) |
missense |
possibly damaging |
0.77 |
R3912:Vmn2r59
|
UTSW |
7 |
41,695,744 (GRCm39) |
missense |
probably benign |
0.00 |
R4167:Vmn2r59
|
UTSW |
7 |
41,670,732 (GRCm39) |
intron |
probably benign |
|
R4357:Vmn2r59
|
UTSW |
7 |
41,661,644 (GRCm39) |
missense |
probably damaging |
1.00 |
R4445:Vmn2r59
|
UTSW |
7 |
41,691,874 (GRCm39) |
missense |
probably damaging |
1.00 |
R4542:Vmn2r59
|
UTSW |
7 |
41,695,497 (GRCm39) |
missense |
possibly damaging |
0.93 |
R4587:Vmn2r59
|
UTSW |
7 |
41,695,648 (GRCm39) |
missense |
probably benign |
0.00 |
R4616:Vmn2r59
|
UTSW |
7 |
41,661,862 (GRCm39) |
missense |
probably benign |
|
R4653:Vmn2r59
|
UTSW |
7 |
41,693,228 (GRCm39) |
missense |
probably benign |
0.19 |
R4703:Vmn2r59
|
UTSW |
7 |
41,661,686 (GRCm39) |
missense |
probably benign |
0.01 |
R4895:Vmn2r59
|
UTSW |
7 |
41,695,218 (GRCm39) |
missense |
probably damaging |
0.98 |
R4910:Vmn2r59
|
UTSW |
7 |
41,693,077 (GRCm39) |
missense |
probably benign |
|
R5045:Vmn2r59
|
UTSW |
7 |
41,695,496 (GRCm39) |
missense |
possibly damaging |
0.93 |
R5105:Vmn2r59
|
UTSW |
7 |
41,696,529 (GRCm39) |
missense |
probably benign |
0.01 |
R5153:Vmn2r59
|
UTSW |
7 |
41,691,834 (GRCm39) |
critical splice donor site |
probably null |
|
R5566:Vmn2r59
|
UTSW |
7 |
41,696,247 (GRCm39) |
missense |
possibly damaging |
0.92 |
R5586:Vmn2r59
|
UTSW |
7 |
41,695,105 (GRCm39) |
missense |
probably benign |
0.12 |
R5606:Vmn2r59
|
UTSW |
7 |
41,695,318 (GRCm39) |
missense |
probably benign |
0.27 |
R5616:Vmn2r59
|
UTSW |
7 |
41,708,191 (GRCm39) |
splice site |
probably null |
|
R5625:Vmn2r59
|
UTSW |
7 |
41,695,884 (GRCm39) |
missense |
probably benign |
0.03 |
R5696:Vmn2r59
|
UTSW |
7 |
41,695,468 (GRCm39) |
missense |
probably benign |
0.00 |
R5982:Vmn2r59
|
UTSW |
7 |
41,695,491 (GRCm39) |
missense |
probably benign |
0.00 |
R6106:Vmn2r59
|
UTSW |
7 |
41,661,749 (GRCm39) |
nonsense |
probably null |
|
R6196:Vmn2r59
|
UTSW |
7 |
41,661,679 (GRCm39) |
missense |
probably benign |
0.36 |
R6228:Vmn2r59
|
UTSW |
7 |
41,691,835 (GRCm39) |
critical splice donor site |
probably null |
|
R6590:Vmn2r59
|
UTSW |
7 |
41,695,890 (GRCm39) |
missense |
probably damaging |
1.00 |
R6625:Vmn2r59
|
UTSW |
7 |
41,693,177 (GRCm39) |
missense |
probably benign |
0.02 |
R6690:Vmn2r59
|
UTSW |
7 |
41,695,890 (GRCm39) |
missense |
probably damaging |
1.00 |
R6768:Vmn2r59
|
UTSW |
7 |
41,661,392 (GRCm39) |
missense |
probably benign |
0.17 |
R6830:Vmn2r59
|
UTSW |
7 |
41,693,171 (GRCm39) |
missense |
probably benign |
0.10 |
R6859:Vmn2r59
|
UTSW |
7 |
41,693,277 (GRCm39) |
missense |
probably damaging |
1.00 |
R7034:Vmn2r59
|
UTSW |
7 |
41,695,644 (GRCm39) |
missense |
probably benign |
0.03 |
R7036:Vmn2r59
|
UTSW |
7 |
41,695,644 (GRCm39) |
missense |
probably benign |
0.03 |
R7145:Vmn2r59
|
UTSW |
7 |
41,695,188 (GRCm39) |
missense |
probably damaging |
1.00 |
R7556:Vmn2r59
|
UTSW |
7 |
41,695,233 (GRCm39) |
missense |
probably damaging |
1.00 |
R7733:Vmn2r59
|
UTSW |
7 |
41,661,443 (GRCm39) |
missense |
probably benign |
0.17 |
R7770:Vmn2r59
|
UTSW |
7 |
41,708,336 (GRCm39) |
missense |
probably damaging |
1.00 |
R7812:Vmn2r59
|
UTSW |
7 |
41,695,196 (GRCm39) |
nonsense |
probably null |
|
R7867:Vmn2r59
|
UTSW |
7 |
41,661,707 (GRCm39) |
missense |
probably damaging |
1.00 |
R7975:Vmn2r59
|
UTSW |
7 |
41,693,199 (GRCm39) |
missense |
probably damaging |
1.00 |
R7999:Vmn2r59
|
UTSW |
7 |
41,696,256 (GRCm39) |
missense |
probably damaging |
1.00 |
R8267:Vmn2r59
|
UTSW |
7 |
41,661,521 (GRCm39) |
missense |
probably damaging |
0.97 |
R8367:Vmn2r59
|
UTSW |
7 |
41,661,247 (GRCm39) |
missense |
probably benign |
0.44 |
R9106:Vmn2r59
|
UTSW |
7 |
41,695,884 (GRCm39) |
missense |
probably benign |
0.03 |
R9135:Vmn2r59
|
UTSW |
7 |
41,693,127 (GRCm39) |
missense |
|
|
R9135:Vmn2r59
|
UTSW |
7 |
41,693,125 (GRCm39) |
missense |
probably benign |
0.33 |
R9273:Vmn2r59
|
UTSW |
7 |
41,695,286 (GRCm39) |
nonsense |
probably null |
|
R9432:Vmn2r59
|
UTSW |
7 |
41,696,254 (GRCm39) |
missense |
probably damaging |
1.00 |
R9433:Vmn2r59
|
UTSW |
7 |
41,695,590 (GRCm39) |
missense |
probably damaging |
0.99 |
R9616:Vmn2r59
|
UTSW |
7 |
41,661,299 (GRCm39) |
missense |
probably damaging |
1.00 |
R9654:Vmn2r59
|
UTSW |
7 |
41,693,217 (GRCm39) |
missense |
probably benign |
0.10 |
R9741:Vmn2r59
|
UTSW |
7 |
41,708,209 (GRCm39) |
missense |
probably damaging |
0.99 |
X0025:Vmn2r59
|
UTSW |
7 |
41,695,365 (GRCm39) |
missense |
probably damaging |
1.00 |
Z1088:Vmn2r59
|
UTSW |
7 |
41,661,838 (GRCm39) |
missense |
possibly damaging |
0.85 |
Z1176:Vmn2r59
|
UTSW |
7 |
41,691,941 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Predicted Primers |
PCR Primer
(F):5'- ACCATCTCATCATTCTAGCTGG -3'
(R):5'- AGTGTCCAGAAAGTCACTATGC -3'
Sequencing Primer
(F):5'- CATCATTCTAGCTGGAACTGTGGC -3'
(R):5'- TGCCTCCAGAAATCTGTGAG -3'
|
Posted On |
2022-03-25 |