Mutagenetix > Incidental Mutation

Incidental Mutation 'R7720:Or2d3c'

595171

Institutional Source

Beutler Lab

Gene Symbol

Or2d3c

Ensembl Gene

ENSMUSG00000062553

Gene Name

olfactory receptor family 2 subfamily D member 3C

Synonyms

MOR260-7, GA_x6K02T2PBJ9-9307730-9306814, Olfr709

MMRRC Submission

067892-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.369) question?

Stock #

R7720 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

106525744-106526664 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 106526618 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glycine to Valine at position 16 (G16V)

Ref Sequence

ENSEMBL: ENSMUSP00000150392 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000072368] [ENSMUST00000215468]

AlphaFold

A0A140T8J9

Predicted Effect

probably benign
Transcript: ENSMUST00000072368
AA Change: G16V

PolyPhen 2 Score 0.269 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000072205
Gene: ENSMUSG00000062553
AA Change: G16V

Domain	Start	End	E-Value	Type
Pfam:7tm_4	31	307	7.8e-58	PFAM
Pfam:7TM_GPCR_Srsx	35	282	8.4e-9	PFAM
Pfam:7tm_1	41	290	5.9e-27	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000215468
AA Change: G16V

PolyPhen 2 Score 0.269 (Sensitivity: 0.91; Specificity: 0.88)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.1%

Validation Efficiency

100% (51/51)

Allele List at MGI

Other mutations in this stock

Total: 53 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Agap2	A	G	10: 126,926,957 (GRCm39)	D1018G	probably damaging	Het
Atm	T	C	9: 53,433,539 (GRCm39)	N237S	possibly damaging	Het
Card6	G	T	15: 5,127,905 (GRCm39)	Q1164K	unknown	Het
Ccdc202	A	G	14: 96,119,548 (GRCm39)	R102G	probably benign	Het
Cped1	G	A	6: 22,222,430 (GRCm39)	C730Y	probably damaging	Het
Csmd1	A	T	8: 15,981,108 (GRCm39)	L2770Q	probably damaging	Het
Ctsw	T	C	19: 5,517,072 (GRCm39)	T87A	probably damaging	Het
Dock4	T	C	12: 40,856,974 (GRCm39)	I1269T	probably damaging	Het
F11	T	C	8: 45,705,127 (GRCm39)	E138G	possibly damaging	Het
Fam124b	A	G	1: 80,177,974 (GRCm39)	S342P	probably damaging	Het
Garin2	T	C	12: 78,758,907 (GRCm39)	S76P	probably damaging	Het
Gipr	T	C	7: 18,896,884 (GRCm39)	I129V	probably benign	Het
Gria4	A	T	9: 4,464,288 (GRCm39)	V558D	probably damaging	Het
Gsdme	C	T	6: 50,206,288 (GRCm39)	G185E	probably damaging	Het
Hapstr1	T	A	16: 8,660,966 (GRCm39)	C148S	probably damaging	Het
Hgd	T	A	16: 37,413,797 (GRCm39)	D86E	probably benign	Het
Hmcn1	T	A	1: 150,522,460 (GRCm39)	H3480L	probably benign	Het
Hs2st1	T	C	3: 144,159,783 (GRCm39)	N127D	probably damaging	Het
Ilf3	A	G	9: 21,310,833 (GRCm39)	N599S	possibly damaging	Het
Itsn1	G	A	16: 91,664,971 (GRCm39)	G1132R	unknown	Het
Jakmip2	A	G	18: 43,704,973 (GRCm39)	S343P	possibly damaging	Het
Kif1b	A	G	4: 149,266,812 (GRCm39)	V1670A	probably benign	Het
Lman2	A	T	13: 55,500,890 (GRCm39)		probably null	Het
Ltbp1	A	T	17: 75,692,119 (GRCm39)	Y1579F	probably damaging	Het
Mon2	G	A	10: 122,868,493 (GRCm39)	A520V	probably benign	Het
Mrpl10	T	G	11: 96,938,363 (GRCm39)	V171G	possibly damaging	Het
Mrps27	A	T	13: 99,537,838 (GRCm39)	T153S	unknown	Het
Muc5ac	G	C	7: 141,363,040 (GRCm39)	G2117A	unknown	Het
Nlrp10	A	G	7: 108,523,695 (GRCm39)	V595A	probably benign	Het
Nol4	A	T	18: 23,173,080 (GRCm39)	M7K	probably benign	Het
Oasl1	G	A	5: 115,067,980 (GRCm39)	S188N	probably damaging	Het
Or5h25	T	C	16: 58,930,134 (GRCm39)	I280V	probably benign	Het
Pcdhga2	A	G	18: 37,802,993 (GRCm39)	Y279C	probably damaging	Het
Pfpl	C	T	19: 12,406,538 (GRCm39)	A263V	probably benign	Het
Phf3	T	G	1: 30,868,938 (GRCm39)	K703N	probably damaging	Het
Pik3ca	C	G	3: 32,490,367 (GRCm39)	P5A	probably damaging	Het
Plekha6	T	C	1: 133,221,445 (GRCm39)	V987A	probably damaging	Het
Ppp3ca	T	A	3: 136,596,250 (GRCm39)	I305N	probably damaging	Het
Prex2	A	G	1: 11,252,161 (GRCm39)	K1069E	possibly damaging	Het
Prss50	T	C	9: 110,690,403 (GRCm39)	V182A	probably damaging	Het
Ptprg	A	G	14: 12,211,703 (GRCm38)	N995S	probably benign	Het
Robo2	C	A	16: 73,693,903 (GRCm39)	G1375V	probably benign	Het
Rtl1	T	C	12: 109,560,864 (GRCm39)	Y325C	possibly damaging	Het
Semp2l1	T	C	1: 32,585,178 (GRCm39)	D244G	probably benign	Het
Shcbp1	A	C	8: 4,798,720 (GRCm39)	S400A	probably damaging	Het
Shfl	C	T	9: 20,780,155 (GRCm39)		probably benign	Het
Sirpb1c	T	A	3: 15,886,236 (GRCm39)	Y380F	probably benign	Het
Tbl2	G	C	5: 135,188,329 (GRCm39)	L374F	probably damaging	Het
Tpr	C	A	1: 150,305,283 (GRCm39)	A1524E	possibly damaging	Het
Vmn2r45	T	A	7: 8,486,460 (GRCm39)	E276V	probably damaging	Het
Vps16	C	T	2: 130,283,623 (GRCm39)	Q606*	probably null	Het
Vstm5	A	T	9: 15,150,652 (GRCm39)	Q29L	probably benign	Het
Wipi1	G	T	11: 109,473,249 (GRCm39)	S250Y	probably damaging	Het

Other mutations in Or2d3c

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01626:Or2d3c	APN	7	106,526,627 (GRCm39)	missense	probably benign	0.12
IGL02111:Or2d3c	APN	7	106,525,823 (GRCm39)	missense	probably damaging	0.99
IGL02891:Or2d3c	APN	7	106,526,288 (GRCm39)	missense	probably damaging	0.99
PIT4453001:Or2d3c	UTSW	7	106,526,049 (GRCm39)	missense	probably benign	0.07
R1553:Or2d3c	UTSW	7	106,526,201 (GRCm39)	missense	possibly damaging	0.78
R1701:Or2d3c	UTSW	7	106,526,129 (GRCm39)	missense	probably damaging	1.00
R2065:Or2d3c	UTSW	7	106,526,162 (GRCm39)	missense	probably damaging	1.00
R2068:Or2d3c	UTSW	7	106,526,162 (GRCm39)	missense	probably damaging	1.00
R2167:Or2d3c	UTSW	7	106,525,797 (GRCm39)	missense	probably damaging	1.00
R3683:Or2d3c	UTSW	7	106,526,301 (GRCm39)	nonsense	probably null
R4640:Or2d3c	UTSW	7	106,525,800 (GRCm39)	missense	possibly damaging	0.73
R5153:Or2d3c	UTSW	7	106,525,776 (GRCm39)	missense	possibly damaging	0.91
R5221:Or2d3c	UTSW	7	106,526,268 (GRCm39)	missense	probably benign	0.00
R5591:Or2d3c	UTSW	7	106,526,489 (GRCm39)	missense	probably damaging	1.00
R6052:Or2d3c	UTSW	7	106,525,896 (GRCm39)	missense	probably benign	0.05
R7358:Or2d3c	UTSW	7	106,526,111 (GRCm39)	missense	probably damaging	1.00
R7513:Or2d3c	UTSW	7	106,526,483 (GRCm39)	missense	possibly damaging	0.64
R7860:Or2d3c	UTSW	7	106,525,777 (GRCm39)	missense	probably benign	0.06
R8814:Or2d3c	UTSW	7	106,526,025 (GRCm39)	missense	probably damaging	1.00
R8989:Or2d3c	UTSW	7	106,526,366 (GRCm39)	missense	probably damaging	1.00
R9342:Or2d3c	UTSW	7	106,526,564 (GRCm39)	missense	possibly damaging	0.90
R9564:Or2d3c	UTSW	7	106,525,847 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- AAATGGTCTTCCTCTTCACCAGG -3'
(R):5'- CAGACTTCCAATTGTCAAGCTAC -3'

Sequencing Primer
(F):5'- ACCTGGGGCACTGTGGTAG -3'
(R):5'- GACTTCCAATTGTCAAGCTACTAAAC -3'

Posted On

2019-11-12