Mutagenetix > Incidental Mutation

Incidental Mutation 'R1167:Taf10'

101132

Institutional Source

Beutler Lab

Gene Symbol

Taf10

Ensembl Gene

ENSMUSG00000043866

Gene Name

TATA-box binding protein associated factor 10

Synonyms

30kDa, Taf2h, TAFII30

MMRRC Submission

039240-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R1167 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

105739393-105744361 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 105743231 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Serine to Glycine at position 188 (S188G)

Ref Sequence

ENSEMBL: ENSMUSP00000118105 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000033182] [ENSMUST00000033184] [ENSMUST00000136687] [ENSMUST00000141116] [ENSMUST00000149695] [ENSMUST00000163389]

AlphaFold

Q8K0H5

Predicted Effect

probably benign
Transcript: ENSMUST00000033182

SMART Domains

Protein: ENSMUSP00000033182
Gene: ENSMUSG00000030890

Domain	Start	End	E-Value	Type
ANK	33	62	4.71e-6	SMART
ANK	66	95	1.04e-7	SMART
ANK	99	128	1.02e-1	SMART
Pfam:Pkinase	193	445	1.5e-25	PFAM
Pfam:Pkinase_Tyr	193	446	7.2e-40	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000033184

SMART Domains

Protein: ENSMUSP00000033184
Gene: ENSMUSG00000030894

Domain	Start	End	E-Value	Type
low complexity region	2	17	N/A	INTRINSIC
Pro-kuma_activ	32	176	4.53e-50	SMART
low complexity region	177	189	N/A	INTRINSIC
Pfam:Peptidase_S8	251	492	1.1e-9	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000054556

Predicted Effect

probably benign
Transcript: ENSMUST00000127298

Predicted Effect

probably benign
Transcript: ENSMUST00000130565

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000131683

Predicted Effect

probably benign
Transcript: ENSMUST00000136687

SMART Domains

Protein: ENSMUSP00000123443
Gene: ENSMUSG00000030890

Domain	Start	End	E-Value	Type
ANK	33	62	4.71e-6	SMART
ANK	66	95	1.04e-7	SMART
ANK	99	128	1.02e-1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000141116
AA Change: S188G

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000118105
Gene: ENSMUSG00000043866
AA Change: S188G

Domain	Start	End	E-Value	Type
low complexity region	17	39	N/A	INTRINSIC
low complexity region	45	91	N/A	INTRINSIC
Pfam:TFIID_30kDa	128	177	6.1e-30	PFAM
low complexity region	181	192	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145123

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000146999

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000148971

Predicted Effect

probably benign
Transcript: ENSMUST00000149695

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000151108

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000210840

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000152508

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000210018

Predicted Effect

probably benign
Transcript: ENSMUST00000153557

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000154626

Predicted Effect

probably benign
Transcript: ENSMUST00000163389

SMART Domains

Protein: ENSMUSP00000130341
Gene: ENSMUSG00000030890

Domain	Start	End	E-Value	Type
ANK	33	62	4.71e-6	SMART
ANK	66	95	1.04e-7	SMART
ANK	99	128	1.02e-1	SMART
Pfam:Pkinase_Tyr	193	446	4e-39	PFAM
Pfam:Pkinase	195	445	3e-23	PFAM

Coding Region Coverage

1x: 99.2%
3x: 98.4%
10x: 96.6%
20x: 93.3%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes one of the small subunits of TFIID that is associated with a subset of TFIID complexes. Studies with human and mammalian cells have shown that this subunit is required for transcriptional activation by the estrogen receptor, for progression through the cell cycle, and may also be required for certain cellular differentiation programs. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous null mice die shortly after implantation. Embryos are developmentally retarded and disorganized, the inner cell mass is small and trophoblasts stop endocycling. Ablation in keratinocytes during fetal development, but not in adult keratinocytes, results in impaired skin barrier function. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930433I11Rik	A	T	7: 40,993,579 (GRCm38)	D315V	probably damaging	Het
Acr	T	C	15: 89,573,974 (GRCm38)	I286T	probably damaging	Het
Adnp	A	G	2: 168,184,500 (GRCm38)	S292P	probably benign	Het
Apol6	T	A	15: 77,047,108 (GRCm38)	Y17*	probably null	Het
Arhgap22	A	G	14: 33,343,307 (GRCm38)		probably null	Het
Bfar	A	G	16: 13,698,894 (GRCm38)	K202E	possibly damaging	Het
Bmpr2	A	T	1: 59,859,304 (GRCm38)	S470C	probably damaging	Het
Cep135	A	G	5: 76,624,637 (GRCm38)	E623G	probably damaging	Het
Clcn3	A	G	8: 60,922,788 (GRCm38)		probably null	Het
Clptm1	A	T	7: 19,634,211 (GRCm38)	M523K	probably damaging	Het
Cyp26b1	A	G	6: 84,584,330 (GRCm38)	W117R	probably damaging	Het
Dnmt3c	T	G	2: 153,711,781 (GRCm38)		probably null	Het
Dst	A	G	1: 34,223,858 (GRCm38)	E2212G	probably damaging	Het
Edrf1	A	G	7: 133,644,066 (GRCm38)	T238A	probably benign	Het
Elmo1	T	C	13: 20,185,455 (GRCm38)	V10A	probably damaging	Het
Ermp1	A	G	19: 29,628,679 (GRCm38)	S225P	possibly damaging	Het
Fem1al	C	T	11: 29,823,567 (GRCm38)	R630H	probably damaging	Het
Fes	A	T	7: 80,383,109 (GRCm38)	L296Q	probably damaging	Het
Foxn1	A	T	11: 78,359,066 (GRCm38)	N544K	probably damaging	Het
Gga1	C	G	15: 78,888,170 (GRCm38)	N223K	probably damaging	Het
Gm10608	CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	9: 119,160,716 (GRCm38)		probably null	Het
Gm4884	A	T	7: 41,043,912 (GRCm38)	Q435L	possibly damaging	Het
Gm8444	T	C	15: 81,843,380 (GRCm38)		probably benign	Het
Ift140	T	G	17: 25,035,745 (GRCm38)	S131A	probably benign	Het
Ipo4	A	G	14: 55,635,020 (GRCm38)	L88P	probably damaging	Het
Itgal	G	A	7: 127,300,939 (GRCm38)	S123N	probably damaging	Het
Kcnn3	C	T	3: 89,564,952 (GRCm38)	Q344*	probably null	Het
Lrrc8e	A	T	8: 4,235,337 (GRCm38)	M521L	probably benign	Het
Myocd	G	T	11: 65,196,377 (GRCm38)	D113E	possibly damaging	Het
Nek4	G	A	14: 30,974,345 (GRCm38)	R499H	possibly damaging	Het
Notch3	T	C	17: 32,122,745 (GRCm38)	D2011G	possibly damaging	Het
Ola1	A	G	2: 73,097,194 (GRCm38)	V347A	probably damaging	Het
Or13p5	C	A	4: 118,734,632 (GRCm38)	F34L	possibly damaging	Het
Or6c75	G	A	10: 129,501,150 (GRCm38)	V89I	probably benign	Het
Or8u10	A	G	2: 86,085,291 (GRCm38)	V162A	probably benign	Het
Oxct2b	A	G	4: 123,117,585 (GRCm38)	T433A	probably damaging	Het
P2ry14	T	C	3: 59,115,131 (GRCm38)	R312G	probably damaging	Het
Pbrm1	A	G	14: 31,050,142 (GRCm38)	N398D	probably damaging	Het
Pdc	T	C	1: 150,333,245 (GRCm38)	Y160H	probably damaging	Het
Pdlim2	C	T	14: 70,164,779 (GRCm38)	R296H	probably damaging	Het
Pop4	A	T	7: 38,263,269 (GRCm38)	D190E	probably benign	Het
Prb1c	G	A	6: 132,361,590 (GRCm38)	P222S	unknown	Het
R3hdm4	A	G	10: 79,912,073 (GRCm38)		probably null	Het
Rab1a	C	A	11: 20,223,172 (GRCm38)	T91K	possibly damaging	Het
Rad9a	A	G	19: 4,197,502 (GRCm38)	V215A	possibly damaging	Het
Rassf3	A	G	10: 121,416,254 (GRCm38)	V84A	probably damaging	Het
Rftn2	G	A	1: 55,204,299 (GRCm38)	T270M	probably damaging	Het
Rho	A	G	6: 115,935,423 (GRCm38)	T100A	probably damaging	Het
Rnft2	T	C	5: 118,228,882 (GRCm38)	I264V	possibly damaging	Het
Robo3	A	T	9: 37,423,907 (GRCm38)	Y567*	probably null	Het
Rpp14	T	A	14: 8,083,705 (GRCm38)		probably null	Het
Rtkn2	T	C	10: 67,997,620 (GRCm38)	S98P	probably damaging	Het
Ryr2	A	G	13: 11,660,113 (GRCm38)	V3376A	possibly damaging	Het
Sbf2	A	T	7: 110,364,549 (GRCm38)	W1030R	probably damaging	Het
Setbp1	G	A	18: 78,857,236 (GRCm38)	A1072V	possibly damaging	Het
Slc4a10	A	G	2: 62,228,574 (GRCm38)	K142E	probably damaging	Het
Slc52a2	A	G	15: 76,539,591 (GRCm38)	E40G	probably benign	Het
Slc8a2	A	G	7: 16,157,387 (GRCm38)	N784S	possibly damaging	Het
Spats2l	A	T	1: 57,943,111 (GRCm38)	Q384L	probably damaging	Het
Steap4	A	C	5: 7,976,520 (GRCm38)	K161T	probably benign	Het
Tbc1d4	C	T	14: 101,608,019 (GRCm38)	D148N	probably damaging	Het
Tenm2	T	G	11: 36,864,684 (GRCm38)	K162N	probably benign	Het
Tmem147	A	G	7: 30,727,796 (GRCm38)	V146A	probably benign	Het
Tnfsf8	A	G	4: 63,837,086 (GRCm38)	S100P	possibly damaging	Het
Trim56	T	C	5: 137,112,520 (GRCm38)	Y714C	probably damaging	Het
Ubxn8	A	G	8: 33,641,901 (GRCm38)	S13P	probably damaging	Het
Usp49	A	G	17: 47,672,226 (GRCm38)	D52G	possibly damaging	Het
Vegfc	A	C	8: 54,186,043 (GRCm38)	Y408S	probably benign	Het
Vmn2r77	A	G	7: 86,801,746 (GRCm38)	N280S	probably benign	Het
Vmn2r8	T	A	5: 108,803,176 (GRCm38)	L134F	probably benign	Het
Wdfy3	T	A	5: 101,875,931 (GRCm38)	I2437F	probably benign	Het
Wwc2	A	T	8: 47,858,779 (GRCm38)	L783*	probably null	Het
Zer1	C	T	2: 30,108,246 (GRCm38)	R351H	probably benign	Het
Zfp715	A	T	7: 43,298,437 (GRCm38)	F700I	possibly damaging	Het
Zfp995	G	A	17: 21,879,979 (GRCm38)	H425Y	probably damaging	Het

Other mutations in Taf10

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R4352:Taf10	UTSW	7	105,743,407 (GRCm38)	unclassified	probably benign
R5341:Taf10	UTSW	7	105,740,932 (GRCm38)	intron	probably benign
R6943:Taf10	UTSW	7	105,744,176 (GRCm38)	missense	probably benign	0.23
R7016:Taf10	UTSW	7	105,743,998 (GRCm38)	splice site	probably null
R7535:Taf10	UTSW	7	105,740,910 (GRCm38)	missense	probably benign	0.04
R8175:Taf10	UTSW	7	105,743,927 (GRCm38)	missense	probably damaging	1.00
R8946:Taf10	UTSW	7	105,744,317 (GRCm38)	start codon destroyed	probably null
R9483:Taf10	UTSW	7	105,743,855 (GRCm38)	missense	probably benign	0.01

Predicted Primers

Posted On

2014-01-15