Mutagenetix > Incidental Mutation

Incidental Mutation 'R6416:Garem2'

517916

Institutional Source

Beutler Lab

Gene Symbol

Garem2

Ensembl Gene

ENSMUSG00000044576

Gene Name

GRB2 associated regulator of MAPK1 subtype 2

Synonyms

Fam59b, Gareml, LOC242915

MMRRC Submission

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.209) question?

Stock #

R6416 (G1)

Quality Score

198.009

Status

Validated

Chromosome

Chromosomal Location

30105161-30118378 bp(+) (GRCm38)

Type of Mutation

nonsense

DNA Base Change (assembly)

G to A at 30116737 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Tryptophan to Stop codon at position 698 (W698*)

Ref Sequence

ENSEMBL: ENSMUSP00000054208 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000058045] [ENSMUST00000156859]

AlphaFold

Q6PAJ3

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000026843

Predicted Effect

probably null
Transcript: ENSMUST00000058045
AA Change: W698*

SMART Domains

Protein: ENSMUSP00000054208
Gene: ENSMUSG00000044576
AA Change: W698*

Domain	Start	End	E-Value	Type
Pfam:CABIT	29	337	1.2e-77	PFAM
low complexity region	379	405	N/A	INTRINSIC
low complexity region	464	486	N/A	INTRINSIC
low complexity region	524	534	N/A	INTRINSIC
low complexity region	538	553	N/A	INTRINSIC
low complexity region	569	588	N/A	INTRINSIC
low complexity region	640	663	N/A	INTRINSIC
low complexity region	674	684	N/A	INTRINSIC
low complexity region	686	696	N/A	INTRINSIC
PDB:2DKZ\|A	794	878	3e-30	PDB
Blast:SAM	812	879	6e-35	BLAST
SCOP:d1kw4a_	816	877	1e-3	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000126081

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000132486

Predicted Effect

probably benign
Transcript: ENSMUST00000156859

SMART Domains

Protein: ENSMUSP00000120976
Gene: ENSMUSG00000025745

Domain	Start	End	E-Value	Type
Pfam:ECH_1	44	297	3.6e-42	PFAM
Pfam:ECH_2	49	225	8.6e-27	PFAM
Pfam:3HCDH_N	363	542	1e-54	PFAM
Pfam:3HCDH	544	639	7.7e-29	PFAM
low complexity region	706	720	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.8%
10x: 98.4%
20x: 94.6%

Validation Efficiency

99% (67/68)

Allele List at MGI

Other mutations in this stock

Total: 68 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310061N02Rik	C	A	16: 88,707,891	R6L	unknown	Het
Anxa11	A	G	14: 25,874,270	Q235R	possibly damaging	Het
Ap2b1	T	A	11: 83,308,239	M1K	probably null	Het
Atl2	G	A	17: 79,850,223	T563I	probably benign	Het
Azin1	A	T	15: 38,492,343	S307R	possibly damaging	Het
Ccdc153	A	G	9: 44,245,780	T118A	probably benign	Het
Chac1	G	A	2: 119,353,534	V206I	probably damaging	Het
Chrm3	A	G	13: 9,877,662	V446A	probably benign	Het
Cped1	T	C	6: 22,123,649	F467S	probably damaging	Het
Csmd3	G	A	15: 48,673,560	P82L	probably damaging	Het
Ddx60	T	A	8: 61,977,950	S840T	probably benign	Het
Ddx60	C	T	8: 61,998,681	H1202Y	probably benign	Het
Dnah8	T	A	17: 30,765,635	N3102K	probably benign	Het
Dst	A	T	1: 34,116,128	K85M	probably damaging	Het
Ehbp1l1	T	C	19: 5,718,757	I839M	probably benign	Het
Fam184b	T	A	5: 45,537,653	M750L	probably benign	Het
Frem2	T	C	3: 53,572,378	T1965A	probably benign	Het
Ftl1	A	T	7: 45,459,210	D41E	probably benign	Het
Glt8d2	T	C	10: 82,652,906	Y283C	probably damaging	Het
Hars	T	C	18: 36,773,590	E109G	possibly damaging	Het
Hspb9	T	C	11: 100,714,210	S121P	probably damaging	Het
Hus1b	A	T	13: 30,947,205	L157Q	probably damaging	Het
Hykk	A	G	9: 54,946,359	M322V	probably benign	Het
Igkv4-61	C	A	6: 69,417,154	A31S	possibly damaging	Het
Il17f	T	A	1: 20,777,907	M116L	probably benign	Het
Kif22	T	C	7: 127,028,932	K9E	possibly damaging	Het
Krt90	T	C	15: 101,559,244	E233G	probably benign	Het
Lipg	T	C	18: 74,957,236	M81V	probably benign	Het
Mocos	C	T	18: 24,701,456	S850L	probably damaging	Het
Mug2	T	A	6: 122,082,754	S1364T	probably damaging	Het
Neb	A	T	2: 52,185,328	N208K	probably benign	Het
Oca2	G	T	7: 56,328,767	R561L	probably benign	Het
Olfm5	A	G	7: 104,154,053	L401P	probably damaging	Het
Olfr109	T	A	17: 37,467,080	Y291*	probably null	Het
Olfr1238	C	A	2: 89,406,522	A186S	possibly damaging	Het
Olfr331	T	C	11: 58,502,340	D72G	probably damaging	Het
Olfr828	G	A	9: 18,815,892	T134M	probably benign	Het
Olfr952	T	A	9: 39,426,891	Y60F	probably damaging	Het
Oxgr1	T	C	14: 120,022,448	N116D	probably damaging	Het
Pcdha11	G	T	18: 37,012,169		probably null	Het
Pi4ka	T	C	16: 17,358,322	I418V	probably benign	Het
Pih1d2	T	C	9: 50,618,609	V62A	probably benign	Het
Pkib	T	A	10: 57,728,138	V46E	probably damaging	Het
Pum1	A	G	4: 130,728,287		probably null	Het
Rbak	G	T	5: 143,176,552	Q19K	possibly damaging	Het
Sema3c	A	G	5: 17,576,961	T32A	probably damaging	Het
Shprh	T	C	10: 11,167,873	W835R	probably damaging	Het
Sis	T	G	3: 72,911,854	K1456N	probably damaging	Het
Slc4a4	A	T	5: 89,179,729	N675I	probably benign	Het
Slc8a3	C	A	12: 81,315,627	M139I	probably damaging	Het
Sorcs3	T	C	19: 48,802,759	F1182S	probably damaging	Het
St8sia2	A	T	7: 73,971,921	I96N	probably damaging	Het
Stx19	T	C	16: 62,822,057	S79P	probably damaging	Het
Tecta	C	T	9: 42,375,267	V698M	probably damaging	Het
Timm22	T	C	11: 76,411,139	S150P	probably damaging	Het
Tjp1	C	T	7: 65,313,205	D995N	possibly damaging	Het
Tmem135	T	A	7: 89,147,794	T365S	probably benign	Het
Tmem174	T	C	13: 98,636,981	T114A	probably benign	Het
Tnc	A	G	4: 64,007,816	I909T	probably benign	Het
Trcg1	A	G	9: 57,241,330	I62V	possibly damaging	Het
Tulp1	A	T	17: 28,356,031	*487K	probably null	Het
Unc79	T	A	12: 103,131,646	V1826E	possibly damaging	Het
Vmn2r13	A	T	5: 109,174,116	N238K	probably damaging	Het
Vmn2r22	T	A	6: 123,637,738	N298Y	probably damaging	Het
Vmn2r23	T	A	6: 123,712,902	F246I	probably damaging	Het
Vps9d1	A	C	8: 123,248,639	V194G	probably damaging	Het
Zfp260	A	T	7: 30,104,810	H45L	possibly damaging	Het
Zfp846	A	T	9: 20,593,720	H292L	possibly damaging	Het

Other mutations in Garem2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R0194:Garem2	UTSW	5	30113930	missense	probably damaging	1.00
R0458:Garem2	UTSW	5	30114182	missense	probably damaging	0.99
R1933:Garem2	UTSW	5	30114862	nonsense	probably null
R1955:Garem2	UTSW	5	30108270	missense	probably benign	0.36
R1970:Garem2	UTSW	5	30117174	nonsense	probably null
R2152:Garem2	UTSW	5	30108299	missense	probably damaging	0.99
R2153:Garem2	UTSW	5	30108299	missense	probably damaging	0.99
R2154:Garem2	UTSW	5	30108299	missense	probably damaging	0.99
R2202:Garem2	UTSW	5	30114764	missense	probably benign	0.43
R2270:Garem2	UTSW	5	30116974	missense	probably damaging	1.00
R2271:Garem2	UTSW	5	30116974	missense	probably damaging	1.00
R4348:Garem2	UTSW	5	30105368	missense	possibly damaging	0.63
R4439:Garem2	UTSW	5	30113346	missense	possibly damaging	0.94
R4665:Garem2	UTSW	5	30114667	missense	probably damaging	0.98
R4666:Garem2	UTSW	5	30114667	missense	probably damaging	0.98
R5733:Garem2	UTSW	5	30116338	missense	probably damaging	1.00
R5851:Garem2	UTSW	5	30114290	missense	probably damaging	1.00
R6998:Garem2	UTSW	5	30114170	missense	possibly damaging	0.88
R8080:Garem2	UTSW	5	30108387	missense	probably damaging	1.00
R9031:Garem2	UTSW	5	30108264	missense	possibly damaging	0.93
R9199:Garem2	UTSW	5	30114473	missense	probably damaging	0.98
R9327:Garem2	UTSW	5	30116991	missense	probably benign
R9502:Garem2	UTSW	5	30116752	missense	possibly damaging	0.94

Predicted Primers

PCR Primer
(F):5'- AGTTAAGAACTACCATAGCTGCC -3'
(R):5'- CAAACCTTCGGGCTCAAAGG -3'

Sequencing Primer
(F):5'- AGTCCTCTCGTCCCCAGAAG -3'
(R):5'- GCTGACCAAGTGGTGAAA -3'

Posted On

2018-05-24