Mutagenetix > Incidental Mutation

Incidental Mutation 'R6753:Narf'

530914

Institutional Source

Beutler Lab

Gene Symbol

Narf

Ensembl Gene

ENSMUSG00000000056

Gene Name

nuclear prelamin A recognition factor

Synonyms

4430402O11Rik

MMRRC Submission

044870-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.107) question?

Stock #

R6753 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

121237253-121255856 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 121242626 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Glutamine at position 84 (H84Q)

Ref Sequence

ENSEMBL: ENSMUSP00000099304 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000103015]

AlphaFold

Q9CYQ7

Predicted Effect

probably benign
Transcript: ENSMUST00000103015
AA Change: H84Q

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000099304
Gene: ENSMUSG00000000056
AA Change: H84Q

Domain	Start	End	E-Value	Type
Pfam:Fe_hyd_lg_C	98	391	1e-75	PFAM
Fe_hyd_SSU	396	452	5.66e-19	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000151088

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000154047

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.3%
20x: 95.1%

Validation Efficiency

99% (68/69)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Several proteins have been found to be prenylated and methylated at their carboxyl-terminal ends. Prenylation was initially believed to be important only for membrane attachment. However, another role for prenylation appears to be its importance in protein-protein interactions. The only nuclear proteins known to be prenylated in mammalian cells are prelamin A- and B-type lamins. Prelamin A is farnesylated and carboxymethylated on the cysteine residue of a carboxyl-terminal CaaX motif. This post-translationally modified cysteine residue is removed from prelamin A when it is endoproteolytically processed into mature lamin A. The protein encoded by this gene binds to the prenylated prelamin A carboxyl-terminal tail domain. It may be a component of a prelamin A endoprotease complex. The encoded protein is located in the nucleus, where it partially colocalizes with the nuclear lamina. It shares limited sequence similarity with iron-only bacterial hydrogenases. Alternatively spliced transcript variants encoding different isoforms have been identified for this gene, including one with a novel exon that is generated by RNA editing. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aatk	G	A	11: 120,010,151 (GRCm38)	P1083S	probably benign	Het
Abcb5	T	A	12: 118,944,906 (GRCm38)	N101I	possibly damaging	Het
Adrb2	A	G	18: 62,179,553 (GRCm38)	V67A	possibly damaging	Het
Agk	T	A	6: 40,368,570 (GRCm38)		probably null	Het
Akap10	A	T	11: 61,886,777 (GRCm38)	M586K	probably damaging	Het
Akt3	A	T	1: 177,050,190 (GRCm38)	Y337*	probably null	Het
Armc1	A	G	3: 19,144,398 (GRCm38)	F133L	possibly damaging	Het
Bank1	T	C	3: 136,093,308 (GRCm38)	E424G	probably damaging	Het
Cacna1a	A	G	8: 84,580,205 (GRCm38)	E1363G	probably damaging	Het
Cacna1d	C	A	14: 30,042,786 (GRCm38)	A2076S	probably damaging	Het
Ccdc73	T	A	2: 104,991,524 (GRCm38)	L606*	probably null	Het
Ccdc8	C	T	7: 16,996,637 (GRCm38)	Q684*	probably null	Het
Ces1b	T	A	8: 93,067,020 (GRCm38)	K314*	probably null	Het
Ces1e	T	A	8: 93,215,128 (GRCm38)	N238I	probably damaging	Het
Chd4	A	G	6: 125,114,300 (GRCm38)	N1238S	probably benign	Het
Cmtr2	T	A	8: 110,222,979 (GRCm38)	D640E	probably damaging	Het
Col7a1	C	T	9: 108,958,128 (GRCm38)	T559I	unknown	Het
Comt	T	C	16: 18,408,021 (GRCm38)	K205R	probably benign	Het
Dbp	A	T	7: 45,708,404 (GRCm38)	E232V	probably damaging	Het
Dcbld2	A	G	16: 58,456,130 (GRCm38)	T470A	possibly damaging	Het
Eml6	T	A	11: 29,754,987 (GRCm38)	D1519V	probably damaging	Het
Evpl	T	A	11: 116,237,906 (GRCm38)	H31L	possibly damaging	Het
Exoc1	T	A	5: 76,563,339 (GRCm38)	I86N	probably damaging	Het
Fat3	C	T	9: 15,915,061 (GRCm38)	E4532K	possibly damaging	Het
Fgfr3	T	C	5: 33,732,159 (GRCm38)	S301P	probably benign	Het
Gas2l1	C	T	11: 5,064,254 (GRCm38)	V69I	probably damaging	Het
Gm2042	T	A	12: 87,958,084 (GRCm38)	I107K	probably damaging	Het
Gucy1b1	T	C	3: 82,039,747 (GRCm38)	D385G	probably null	Het
Ints1	T	A	5: 139,765,175 (GRCm38)	E824D	probably damaging	Het
Itfg1	T	C	8: 85,835,078 (GRCm38)	D142G	probably benign	Het
Jaml	A	G	9: 45,107,379 (GRCm38)	N359D	probably benign	Het
Kcnh7	T	A	2: 62,850,377 (GRCm38)	I289L	probably benign	Het
Klf12	G	A	14: 100,109,776 (GRCm38)	Q40*	probably null	Het
Mcm4	A	C	16: 15,629,362 (GRCm38)	N579K	possibly damaging	Het
Mfsd2b	A	T	12: 4,867,358 (GRCm38)	F179I	possibly damaging	Het
Mmp11	C	T	10: 75,928,374 (GRCm38)	V86M	probably damaging	Het
Mogs	T	C	6: 83,115,882 (GRCm38)	V101A	probably damaging	Het
Olfr987	C	A	2: 85,331,798 (GRCm38)	M33I	probably benign	Het
Otog	A	C	7: 46,249,071 (GRCm38)	E204D	probably benign	Het
Parp8	G	A	13: 116,895,115 (GRCm38)	H354Y	possibly damaging	Het
Pcnx	C	A	12: 81,964,480 (GRCm38)	D1238E	probably damaging	Het
Pi4ka	A	G	16: 17,376,982 (GRCm38)	L184P	possibly damaging	Het
Pkd1l3	C	T	8: 109,624,449 (GRCm38)	T642I	probably damaging	Het
Pkhd1l1	G	A	15: 44,589,663 (GRCm38)	E3995K	probably benign	Het
Prdm9	A	T	17: 15,544,956 (GRCm38)	Y521N	probably benign	Het
Prex2	A	G	1: 11,184,456 (GRCm38)	S1105G	probably damaging	Het
Prss35	T	A	9: 86,756,100 (GRCm38)	F308I	probably damaging	Het
Rab22a	C	T	2: 173,701,055 (GRCm38)	A167V	probably benign	Het
Rims2	A	G	15: 39,566,973 (GRCm38)	Q871R	possibly damaging	Het
Rorb	A	T	19: 18,957,247 (GRCm38)	M253K	probably benign	Het
Ryr3	T	C	2: 112,652,610 (GRCm38)	D4269G	probably damaging	Het
Snx11	T	C	11: 96,769,906 (GRCm38)		probably benign	Het
Son	A	G	16: 91,657,188 (GRCm38)	Q941R	probably damaging	Het
Sptbn2	G	T	19: 4,747,785 (GRCm38)	R1880L	probably benign	Het
Sun1	G	A	5: 139,215,259 (GRCm38)		probably null	Het
Tprn	A	G	2: 25,264,038 (GRCm38)	R451G	probably benign	Het
Trbv30	T	A	6: 41,281,377 (GRCm38)	M1K	probably null	Het
Ttn	C	A	2: 76,738,221 (GRCm38)	G25697W	probably damaging	Het
Ubb	T	G	11: 62,551,527 (GRCm38)		probably null	Het
Unc13b	C	T	4: 43,239,331 (GRCm38)	R1038C	probably damaging	Het
Usp7	T	C	16: 8,696,911 (GRCm38)	M687V	probably benign	Het
Zfp160	G	A	17: 21,020,734 (GRCm38)	M21I	probably benign	Het
Zfp868	T	C	8: 69,612,096 (GRCm38)	N196S	probably benign	Het
Zufsp	A	T	10: 33,928,029 (GRCm38)	I483N	probably damaging	Het

Other mutations in Narf

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00402:Narf	APN	11	121,238,518 (GRCm38)	critical splice donor site	probably null
R0128:Narf	UTSW	11	121,250,836 (GRCm38)	missense	probably damaging	1.00
R0542:Narf	UTSW	11	121,252,864 (GRCm38)	missense	probably damaging	1.00
R1326:Narf	UTSW	11	121,242,553 (GRCm38)	missense	probably damaging	1.00
R2035:Narf	UTSW	11	121,238,500 (GRCm38)	missense	probably benign	0.00
R2049:Narf	UTSW	11	121,250,369 (GRCm38)	nonsense	probably null
R2078:Narf	UTSW	11	121,245,394 (GRCm38)	missense	probably benign	0.03
R3711:Narf	UTSW	11	121,246,938 (GRCm38)	nonsense	probably null
R3967:Narf	UTSW	11	121,238,421 (GRCm38)	missense	possibly damaging	0.92
R3968:Narf	UTSW	11	121,238,421 (GRCm38)	missense	possibly damaging	0.92
R3970:Narf	UTSW	11	121,238,421 (GRCm38)	missense	possibly damaging	0.92
R4128:Narf	UTSW	11	121,250,435 (GRCm38)	splice site	probably null
R4913:Narf	UTSW	11	121,244,643 (GRCm38)	missense	probably damaging	1.00
R4928:Narf	UTSW	11	121,244,939 (GRCm38)	missense	possibly damaging	0.87
R4946:Narf	UTSW	11	121,250,353 (GRCm38)	missense	possibly damaging	0.71
R5404:Narf	UTSW	11	121,242,626 (GRCm38)	missense	probably benign	0.00
R5799:Narf	UTSW	11	121,244,654 (GRCm38)	missense	probably damaging	1.00
R6912:Narf	UTSW	11	121,238,461 (GRCm38)	missense	probably benign	0.00
R7311:Narf	UTSW	11	121,249,150 (GRCm38)	missense	probably benign	0.31
R8056:Narf	UTSW	11	121,245,344 (GRCm38)	missense	possibly damaging	0.89
R8559:Narf	UTSW	11	121,250,432 (GRCm38)	critical splice donor site	probably null
R9021:Narf	UTSW	11	121,245,383 (GRCm38)	missense	probably damaging	0.98
X0011:Narf	UTSW	11	121,250,872 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ACCATCCCTAAAGAAGCAATGCT -3'
(R):5'- AGAACCCTGTATGTATTTATCTACTCA -3'

Sequencing Primer
(F):5'- AGCCGGGCAGTACCTTTAATC -3'
(R):5'- ATCCTGGGTTCTGTAAGAAAGC -3'

Posted On

2018-08-01