Mutagenetix > Incidental Mutation

Incidental Mutation 'R8686:Spopfm2'

662024

Institutional Source

Beutler Lab

Gene Symbol

Spopfm2

Ensembl Gene

ENSMUSG00000074424

Gene Name

speckle-type BTB/POZ protein family member 2

Synonyms

Gm10696

MMRRC Submission

068541-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.928) question?

Stock #

R8686 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

94081719-94085500 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 94083427 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 128 (D128G)

Ref Sequence

ENSEMBL: ENSMUSP00000124942 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000161475] [ENSMUST00000167916]

AlphaFold

Q3UTC4

Predicted Effect

probably benign
Transcript: ENSMUST00000161475
AA Change: D128G

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)

SMART Domains

Protein: ENSMUSP00000124942
Gene: ENSMUSG00000074424
AA Change: D128G

Domain	Start	End	E-Value	Type
MATH	24	130	4.7e-10	SMART
BTB	188	287	1.53e-25	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000167916
AA Change: D128G

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)

SMART Domains

Protein: ENSMUSP00000132199
Gene: ENSMUSG00000074424
AA Change: D128G

Domain	Start	End	E-Value	Type
MATH	24	130	4.7e-10	SMART
BTB	188	287	1.53e-25	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.6%

Validation Efficiency

100% (58/58)

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam25	A	G	8: 41,208,521 (GRCm39)	T596A	probably benign	Het
Adamts6	A	G	13: 104,450,207 (GRCm39)	I303V	probably damaging	Het
Alpl	A	T	4: 137,471,112 (GRCm39)	H341Q	probably damaging	Het
Cachd1	G	A	4: 100,845,325 (GRCm39)	R939H	probably damaging	Het
Cd22	G	A	7: 30,569,494 (GRCm39)	R541C	probably benign	Het
Cenpf	A	T	1: 189,391,801 (GRCm39)	M660K	probably benign	Het
Cmya5	A	T	13: 93,231,888 (GRCm39)	S1067T	possibly damaging	Het
Col5a2	C	T	1: 45,461,147 (GRCm39)	G250D	probably damaging	Het
Cylc2	C	T	4: 51,229,651 (GRCm39)	T331M	unknown	Het
Dgka	A	G	10: 128,568,962 (GRCm39)	M201T	probably benign	Het
Dnajc13	T	C	9: 104,048,004 (GRCm39)	I1804V	probably benign	Het
Dym	T	A	18: 75,419,754 (GRCm39)	Y642N	probably damaging	Het
Efr3b	A	T	12: 4,050,886 (GRCm39)	D26E	probably damaging	Het
Emilin1	A	T	5: 31,075,040 (GRCm39)	K427M	possibly damaging	Het
Fam187b	T	C	7: 30,676,659 (GRCm39)	L56S	probably benign	Het
Fbh1	C	T	2: 11,760,469 (GRCm39)	V694I	probably benign	Het
Fgd2	C	T	17: 29,597,997 (GRCm39)	T644I	probably benign	Het
G6pc1	T	G	11: 101,265,533 (GRCm39)		probably null	Het
Gli2	A	G	1: 118,764,417 (GRCm39)	S1245P	probably benign	Het
Gpr137b	T	C	13: 13,533,991 (GRCm39)	Y355C		Het
Ighv1-84	T	C	12: 115,944,524 (GRCm39)	D50G	probably benign	Het
Impdh1	C	A	6: 29,216,214 (GRCm39)		probably benign	Het
Inhca	C	T	9: 103,136,627 (GRCm39)	A525T	probably benign	Het
Irf4	A	T	13: 30,945,433 (GRCm39)	D393V	possibly damaging	Het
Kalrn	A	G	16: 34,181,305 (GRCm39)	L111P	probably damaging	Het
Lrch3	T	C	16: 32,802,223 (GRCm39)	V58A	possibly damaging	Het
Lrif1	C	T	3: 106,640,097 (GRCm39)	T394I	probably damaging	Het
Map4k1	A	G	7: 28,693,498 (GRCm39)	T434A	probably benign	Het
Mcur1	G	A	13: 43,695,193 (GRCm39)	T327M	probably damaging	Het
Myo9b	G	T	8: 71,786,966 (GRCm39)	S716I	probably benign	Het
Nol10	T	A	12: 17,419,772 (GRCm39)		probably benign	Het
Nos3	A	G	5: 24,573,841 (GRCm39)	T202A	possibly damaging	Het
Odad1	A	G	7: 45,597,116 (GRCm39)	T456A	probably benign	Het
Or14j7	T	C	17: 38,235,168 (GRCm39)	V237A	probably benign	Het
Or2d4	A	C	7: 106,543,905 (GRCm39)	M101R	probably benign	Het
Parp12	A	T	6: 39,094,856 (GRCm39)	S80T	probably benign	Het
Pde1a	C	T	2: 79,758,086 (GRCm39)	V50I	probably benign	Het
Pfkl	A	T	10: 77,833,356 (GRCm39)		probably null	Het
Phkg1	A	T	5: 129,895,056 (GRCm39)	Y207N	probably damaging	Het
Pik3r4	A	G	9: 105,535,728 (GRCm39)	T640A	possibly damaging	Het
Pip5k1c	C	A	10: 81,147,827 (GRCm39)	H411N	probably damaging	Het
Pla2g4e	A	G	2: 120,075,172 (GRCm39)	S73P	probably damaging	Het
Polr2b	T	C	5: 77,483,510 (GRCm39)	V662A	probably damaging	Het
Prss43	C	T	9: 110,658,494 (GRCm39)	R265C	possibly damaging	Het
Rap1b	A	T	10: 117,658,746 (GRCm39)	V29D	probably damaging	Het
Rraga	A	G	4: 86,495,048 (GRCm39)	E298G	probably damaging	Het
Rrp8	A	T	7: 105,382,781 (GRCm39)	I418N	probably damaging	Het
Siglecf	T	C	7: 43,005,030 (GRCm39)	V420A	probably benign	Het
Snx14	T	A	9: 88,297,746 (GRCm39)	N174I	probably damaging	Het
Speer4e1	T	C	5: 14,984,129 (GRCm39)	N229S	probably benign	Het
Teddm3	A	G	16: 20,971,685 (GRCm39)	*295Q	probably null	Het
Tfap2c	A	G	2: 172,393,926 (GRCm39)	D245G	possibly damaging	Het
Tfap2d	A	G	1: 19,178,508 (GRCm39)	N191S	probably benign	Het
Tmt1b	A	T	10: 128,796,476 (GRCm39)	M111K	possibly damaging	Het
Unc80	A	G	1: 66,651,427 (GRCm39)	R1591G	possibly damaging	Het
Vmn1r116	T	C	7: 20,606,616 (GRCm39)	W146R	probably damaging	Het
Vps13b	C	G	15: 35,925,535 (GRCm39)	S3823R	probably damaging	Het
Wiz	T	A	17: 32,586,821 (GRCm39)	D163V	probably damaging	Het
Xylt1	G	C	7: 116,980,594 (GRCm39)	A61P	unknown	Het
Zfp521	A	C	18: 13,978,701 (GRCm39)	F571V	probably damaging	Het
Zfp664	T	A	5: 124,963,133 (GRCm39)	C176S	possibly damaging	Het
Zfyve26	T	C	12: 79,334,227 (GRCm39)	N264D	probably benign	Het

Other mutations in Spopfm2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01744:Spopfm2	APN	3	94,083,544 (GRCm39)	missense	probably damaging	1.00
IGL02057:Spopfm2	APN	3	94,083,662 (GRCm39)	missense	probably damaging	1.00
R1983:Spopfm2	UTSW	3	94,083,601 (GRCm39)	missense	possibly damaging	0.89
R2102:Spopfm2	UTSW	3	94,082,973 (GRCm39)	nonsense	probably null
R2110:Spopfm2	UTSW	3	94,082,834 (GRCm39)	missense	probably damaging	0.99
R2172:Spopfm2	UTSW	3	94,083,605 (GRCm39)	missense	possibly damaging	0.68
R2358:Spopfm2	UTSW	3	94,082,855 (GRCm39)	missense	possibly damaging	0.61
R2358:Spopfm2	UTSW	3	94,082,854 (GRCm39)	missense	possibly damaging	0.81
R4534:Spopfm2	UTSW	3	94,083,757 (GRCm39)	missense	probably benign	0.39
R4939:Spopfm2	UTSW	3	94,083,540 (GRCm39)	nonsense	probably null
R4961:Spopfm2	UTSW	3	94,082,841 (GRCm39)	nonsense	probably null
R4993:Spopfm2	UTSW	3	94,083,623 (GRCm39)	missense	probably damaging	1.00
R7154:Spopfm2	UTSW	3	94,083,526 (GRCm39)	missense	probably benign	0.17
R7218:Spopfm2	UTSW	3	94,082,856 (GRCm39)	missense	possibly damaging	0.91
R7256:Spopfm2	UTSW	3	94,083,667 (GRCm39)	missense	probably benign	0.01
R7464:Spopfm2	UTSW	3	94,083,411 (GRCm39)	missense	probably benign	0.08
R7473:Spopfm2	UTSW	3	94,083,509 (GRCm39)	nonsense	probably null
R7596:Spopfm2	UTSW	3	94,083,737 (GRCm39)	missense	probably benign	0.12
R7974:Spopfm2	UTSW	3	94,082,848 (GRCm39)	missense	probably benign	0.18
R8419:Spopfm2	UTSW	3	94,082,921 (GRCm39)	missense	probably benign	0.06
R8497:Spopfm2	UTSW	3	94,083,119 (GRCm39)	missense	possibly damaging	0.93
R8519:Spopfm2	UTSW	3	94,083,497 (GRCm39)	missense	probably benign	0.05
R9223:Spopfm2	UTSW	3	94,082,950 (GRCm39)	missense	probably damaging	1.00
R9748:Spopfm2	UTSW	3	94,083,155 (GRCm39)	missense	probably damaging	0.99
Z1177:Spopfm2	UTSW	3	94,083,409 (GRCm39)	missense	probably benign	0.03

Predicted Primers

PCR Primer
(F):5'- GCCTTGTGAGCCCTGAATTC -3'
(R):5'- ACCTGTCAGTTTACCTGGGG -3'

Sequencing Primer
(F):5'- CAGTCTGTGCACAGGGAATTCTC -3'
(R):5'- CTGGGGTTACTCCACTGTCAAAAG -3'

Posted On

2021-03-08