Mutagenetix > Incidental Mutations

Incidental Mutation 'R4581:Skint4'

343656

Institutional Source

Beutler Lab

Gene Symbol

Skint4

Ensembl Gene

ENSMUSG00000055960

Gene Name

selection and upkeep of intraepithelial T cells 4

Synonyms

MMRRC Submission

041802-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.062) question?

Stock #

R4581 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

112072016-112168076 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 112087042 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Proline at position 17 (L17P)

Ref Sequence

ENSEMBL: ENSMUSP00000102175 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000069769] [ENSMUST00000106564] [ENSMUST00000106565] [ENSMUST00000106566]

AlphaFold

A7TZF3

Predicted Effect

probably damaging
Transcript: ENSMUST00000069769
AA Change: L17P

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000070676
Gene: ENSMUSG00000055960
AA Change: L17P

Domain	Start	End	E-Value	Type
signal peptide	1	25	N/A	INTRINSIC
IG	33	140	7.24e-10	SMART
Pfam:C2-set_2	141	227	6.2e-8	PFAM
transmembrane domain	242	264	N/A	INTRINSIC
transmembrane domain	296	318	N/A	INTRINSIC
transmembrane domain	342	364	N/A	INTRINSIC
transmembrane domain	383	405	N/A	INTRINSIC
transmembrane domain	425	447	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000106564
AA Change: L17P

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000102174
Gene: ENSMUSG00000055960
AA Change: L17P

Domain	Start	End	E-Value	Type
signal peptide	1	25	N/A	INTRINSIC
IG	33	140	7.24e-10	SMART
Pfam:C2-set_2	141	227	6.2e-8	PFAM
transmembrane domain	242	264	N/A	INTRINSIC
transmembrane domain	296	318	N/A	INTRINSIC
transmembrane domain	342	364	N/A	INTRINSIC
transmembrane domain	383	405	N/A	INTRINSIC
transmembrane domain	425	447	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000106565
AA Change: L17P

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000102175
Gene: ENSMUSG00000055960
AA Change: L17P

Domain	Start	End	E-Value	Type
signal peptide	1	25	N/A	INTRINSIC
IG	33	140	7.24e-10	SMART
Pfam:C2-set_2	141	227	6.2e-8	PFAM
transmembrane domain	242	264	N/A	INTRINSIC
transmembrane domain	296	318	N/A	INTRINSIC
transmembrane domain	342	364	N/A	INTRINSIC
transmembrane domain	383	405	N/A	INTRINSIC
transmembrane domain	425	447	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000106566
AA Change: L25P

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000102176
Gene: ENSMUSG00000055960
AA Change: L25P

Domain	Start	End	E-Value	Type
IG	41	148	7.24e-10	SMART
transmembrane domain	250	272	N/A	INTRINSIC
transmembrane domain	304	326	N/A	INTRINSIC
transmembrane domain	350	372	N/A	INTRINSIC
transmembrane domain	391	413	N/A	INTRINSIC
transmembrane domain	433	455	N/A	INTRINSIC

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.2%
20x: 95.1%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2410089E03Rik	C	A	15: 8,171,798	P20T	possibly damaging	Het
3425401B19Rik	G	T	14: 32,661,871	S712R	possibly damaging	Het
4933427I04Rik	A	G	4: 123,860,353	D20G	possibly damaging	Het
Abca7	A	G	10: 80,006,568	D1112G	probably benign	Het
Actc1	G	T	2: 114,049,608	H175N	possibly damaging	Het
Adgrd1	C	T	5: 129,202,531	A863V	possibly damaging	Het
Ankrd17	T	C	5: 90,283,120	D935G	possibly damaging	Het
Ankrd7	T	A	6: 18,868,021	N95K	probably damaging	Het
Arhgef4	G	A	1: 34,732,124	E1171K	possibly damaging	Het
Ascc3	T	C	10: 50,711,025	I991T	probably damaging	Het
Cacna1s	T	A	1: 136,070,970		probably null	Het
Camk1d	A	T	2: 5,354,704	V177E	probably benign	Het
Cdh18	T	A	15: 23,226,783	I110N	probably damaging	Het
Cenpe	A	G	3: 135,247,000	K1484E	probably benign	Het
Cep68	A	G	11: 20,239,333	S560P	probably benign	Het
Cog3	G	T	14: 75,732,951	T352K	probably benign	Het
Cox6a2	A	G	7: 128,205,980	S44P	possibly damaging	Het
Csmd2	T	C	4: 128,369,088	V689A	probably benign	Het
Ddx60	A	T	8: 62,023,261	M1548L	possibly damaging	Het
Dennd5b	G	T	6: 149,016,984		silent	Het
Dlgap2	T	C	8: 14,846,679	Y1052H	probably damaging	Het
Dnaaf5	T	A	5: 139,184,685	D502E	probably damaging	Het
Efhb	C	A	17: 53,426,275	A523S	probably damaging	Het
Epha8	C	T	4: 136,933,464	V648M	probably damaging	Het
Fanca	C	T	8: 123,274,338		probably null	Het
Fbxw7	G	A	3: 84,967,545	E205K	probably benign	Het
Fer1l6	C	T	15: 58,640,226	T1514I	probably damaging	Het
Gm12886	T	C	4: 121,416,683	E112G	probably damaging	Het
Gm7535	T	C	17: 17,911,083		probably benign	Het
Irf2bp2	T	A	8: 126,591,255	Q524L	probably damaging	Het
Itih4	A	G	14: 30,900,968	D864G	probably benign	Het
Kdm4c	T	G	4: 74,357,339		probably null	Het
Ltn1	A	T	16: 87,402,024		probably null	Het
Mafa	G	T	15: 75,747,736	P63T	unknown	Het
Mars2	T	A	1: 55,237,862	L208H	probably damaging	Het
Myom2	A	G	8: 15,106,459	I769V	probably benign	Het
Nyap1	A	G	5: 137,736,022	S250P	probably damaging	Het
Olfr1082	A	T	2: 86,594,228	M200K	probably benign	Het
Osmr	C	T	15: 6,842,894	V240I	probably benign	Het
Pcdhga3	A	G	18: 37,676,881	T796A	probably benign	Het
Pclo	T	C	5: 14,675,505	V1459A	unknown	Het
Phactr3	A	C	2: 178,283,172	H300P	probably damaging	Het
Pla2g4e	T	G	2: 120,186,382	H226P	possibly damaging	Het
Plcd4	T	A	1: 74,548,224	W48R	probably damaging	Het
Prdm16	A	G	4: 154,323,353	S1140P	probably damaging	Het
Rarg	A	C	15: 102,252,551	S18A	possibly damaging	Het
Rfx4	T	A	10: 84,844,300	S114T	possibly damaging	Het
Sec14l4	G	A	11: 4,043,375		probably null	Het
Six1	T	G	12: 73,045,934	T165P	probably benign	Het
Slc25a23	T	A	17: 57,052,740	Y337F	probably damaging	Het
Slc9a3	A	G	13: 74,164,165	Y627C	probably damaging	Het
Smu1	A	C	4: 40,737,401		probably null	Het
Spryd3	A	G	15: 102,130,364	S141P	probably damaging	Het
Src	A	T	2: 157,463,038	N175I	probably damaging	Het
Srcap	GCTCCTCCTCCTCCTCCT	GCTCCTCCTCCTCCT	7: 127,558,310		probably benign	Het
Stc2	A	G	11: 31,365,326		probably null	Het
Taf6l	T	C	19: 8,778,208	D261G	probably damaging	Het
Tal1	T	G	4: 115,064,722	V167G	probably damaging	Het
Tfec	G	A	6: 16,834,125	T261I	probably damaging	Het
Tgfb1	G	T	7: 25,697,230	S273I	possibly damaging	Het
Tmem8b	T	A	4: 43,685,760	V636E	probably damaging	Het
Top2b	T	G	14: 16,409,189	I777M	probably damaging	Het
Trappc11	A	T	8: 47,493,345	M1084K	probably damaging	Het
Trem3	A	C	17: 48,249,611	T37P	possibly damaging	Het
Ttc7b	G	A	12: 100,500,117	R79C	probably damaging	Het
Urb1	T	C	16: 90,788,146	D529G	probably benign	Het
Vmn2r8	T	A	5: 108,801,704	T426S	probably benign	Het
Yipf4	T	C	17: 74,499,094	Y243H	probably benign	Het
Zfp574	T	A	7: 25,081,313	C587S	probably damaging	Het
Zfp93	C	A	7: 24,275,668	H359Q	probably damaging	Het
Znfx1	T	C	2: 167,050,316	E660G	probably damaging	Het

Other mutations in Skint4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01397:Skint4	APN	4	112120010	missense	possibly damaging	0.86
IGL01654:Skint4	APN	4	112120057	missense	probably damaging	0.99
IGL02040:Skint4	APN	4	112146482	splice site	probably benign
IGL02328:Skint4	APN	4	112120058	missense	possibly damaging	0.92
IGL02811:Skint4	APN	4	112087003	missense	possibly damaging	0.86
IGL02965:Skint4	APN	4	112136021	missense	probably benign	0.01
IGL03039:Skint4	APN	4	112124650	missense	probably benign	0.20
IGL03060:Skint4	APN	4	112118235	missense	probably benign	0.33
IGL03075:Skint4	APN	4	112087042	missense	probably damaging	1.00
IGL03352:Skint4	APN	4	112165686	missense	possibly damaging	0.96
PIT4378001:Skint4	UTSW	4	112087035	missense	probably benign	0.01
R0483:Skint4	UTSW	4	112117939	splice site	probably benign
R1175:Skint4	UTSW	4	112124596	missense	probably benign	0.14
R1446:Skint4	UTSW	4	112118114	missense	probably benign	0.11
R1641:Skint4	UTSW	4	112136043	missense	possibly damaging	0.93
R1983:Skint4	UTSW	4	112146492	missense	probably benign	0.00
R2168:Skint4	UTSW	4	112086986	critical splice acceptor site	probably null
R2272:Skint4	UTSW	4	112119868	missense	probably benign	0.01
R2287:Skint4	UTSW	4	112118205	missense	possibly damaging	0.70
R3801:Skint4	UTSW	4	112118181	missense	probably damaging	0.98
R3802:Skint4	UTSW	4	112118181	missense	probably damaging	0.98
R3804:Skint4	UTSW	4	112118181	missense	probably damaging	0.98
R4009:Skint4	UTSW	4	112120109	missense	possibly damaging	0.70
R4050:Skint4	UTSW	4	112124614	missense	probably benign	0.01
R4564:Skint4	UTSW	4	112119869	missense	probably damaging	0.99
R4587:Skint4	UTSW	4	112087024	missense	probably damaging	0.99
R4674:Skint4	UTSW	4	112118233	missense	probably damaging	1.00
R4723:Skint4	UTSW	4	112118236	missense	possibly damaging	0.70
R4753:Skint4	UTSW	4	112146531	missense	probably benign	0.00
R4775:Skint4	UTSW	4	112136064	missense	probably damaging	0.97
R4832:Skint4	UTSW	4	112143766	missense	possibly damaging	0.49
R5299:Skint4	UTSW	4	112136006	missense	possibly damaging	0.59
R6118:Skint4	UTSW	4	112119822	splice site	probably null
R6433:Skint4	UTSW	4	112146510	missense	probably benign	0.00
R6616:Skint4	UTSW	4	112118230	missense	possibly damaging	0.70
R6698:Skint4	UTSW	4	112119899	missense	probably damaging	1.00
R6752:Skint4	UTSW	4	112119863	missense	possibly damaging	0.89
R7034:Skint4	UTSW	4	112158084	missense	possibly damaging	0.53
R7102:Skint4	UTSW	4	112118101	missense	probably damaging	1.00
R7602:Skint4	UTSW	4	112118271	missense	possibly damaging	0.50
R8027:Skint4	UTSW	4	112157985	critical splice acceptor site	probably null
R8038:Skint4	UTSW	4	112119806	intron	probably benign
R8147:Skint4	UTSW	4	112136021	missense	probably benign	0.06
R8375:Skint4	UTSW	4	112117976	missense	probably damaging	0.98
R8682:Skint4	UTSW	4	112136040	missense	possibly damaging	0.86
R8695:Skint4	UTSW	4	112118067	missense	probably damaging	1.00
R9068:Skint4	UTSW	4	112165735	missense	possibly damaging	0.93
R9361:Skint4	UTSW	4	112143824	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- GTTTGAAATTGAGGCCTAATGGTAG -3'
(R):5'- TTCTTCCTGGAAGCTGACACAAAC -3'

Sequencing Primer
(F):5'- GTGGTTTCACTAGTCATTGAC -3'
(R):5'- GTATCTAAGCTGGATACTCTTGTGAC -3'

Posted On

2015-09-24