Mutagenetix > Incidental Mutations

Incidental Mutation 'R1061:R3hcc1l'

94567

Institutional Source

Beutler Lab

Gene Symbol

R3hcc1l

Ensembl Gene

ENSMUSG00000025184

Gene Name

R3H domain and coiled-coil containing 1 like

Synonyms

D19Ertd386e, 1700036B12Rik

MMRRC Submission

039147-MU

Accession Numbers

Is this an essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1061 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

42518759-42592343 bp(+) (GRCm38)

Type of Mutation

nonsense

DNA Base Change (assembly)

C to T at 42583426 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Stop codon at position 135 (R135*)

Ref Sequence

ENSEMBL: ENSMUSP00000124036 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000026188] [ENSMUST00000160107]

AlphaFold

Q8BJM3

Predicted Effect

probably null
Transcript: ENSMUST00000026188
AA Change: R715*

SMART Domains

Protein: ENSMUSP00000026188
Gene: ENSMUSG00000025184
AA Change: R715*

Domain	Start	End	E-Value	Type
low complexity region	163	178	N/A	INTRINSIC
low complexity region	694	706	N/A	INTRINSIC
coiled coil region	734	766	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000160107
AA Change: R135*

SMART Domains

Protein: ENSMUSP00000124036
Gene: ENSMUSG00000025184
AA Change: R135*

Domain	Start	End	E-Value	Type
low complexity region	114	126	N/A	INTRINSIC
coiled coil region	154	186	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000162238

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.4%
20x: 93.1%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb11	C	T	2: 69,277,809	A715T	probably benign	Het
Ampd2	A	G	3: 108,075,689	Y641H	probably damaging	Het
Aqp4	A	T	18: 15,398,191	V171E	probably damaging	Het
Arid4a	T	A	12: 71,074,955	S381R	probably damaging	Het
Armc8	T	G	9: 99,537,731	N51H	probably damaging	Het
Asic5	T	A	3: 82,021,001	Y424N	probably damaging	Het
Bcl11a	A	T	11: 24,164,069	K471*	probably null	Het
Birc6	A	G	17: 74,689,312	T4494A	probably damaging	Het
Btbd9	A	G	17: 30,527,435	I139T	probably benign	Het
Ccdc114	T	C	7: 45,941,755	I218T	probably damaging	Het
Ccdc60	C	A	5: 116,172,468	R178S	possibly damaging	Het
Cd163	C	T	6: 124,309,169	A226V	probably benign	Het
Cog1	T	G	11: 113,652,037	S170A	probably benign	Het
Cwc15	T	C	9: 14,507,915	L169P	probably damaging	Het
Cyp3a25	A	T	5: 145,986,833	D333E	probably benign	Het
Ddc	C	T	11: 11,829,132	V331I	probably benign	Het
Dlc1	T	A	8: 36,858,051	T367S	probably benign	Het
Dnah17	T	C	11: 118,052,688	D3183G	possibly damaging	Het
Eif2a	T	A	3: 58,545,065	Y165*	probably null	Het
Eml6	T	C	11: 29,777,267	D1285G	probably damaging	Het
Fam92b	C	A	8: 120,169,704		probably null	Het
Fasn	T	C	11: 120,822,182		probably null	Het
Fbn1	T	C	2: 125,345,963	T1549A	probably benign	Het
Fezf2	T	C	14: 12,342,713	Y384C	probably damaging	Het
Flvcr1	A	T	1: 191,008,173	V550E	probably benign	Het
Gcm2	A	G	13: 41,105,871	W41R	probably damaging	Het
Gli2	A	T	1: 118,854,517	M160K	possibly damaging	Het
Gpr61	C	T	3: 108,150,307	R346H	probably damaging	Het
Hoxa5	A	T	6: 52,204,155	S66T	probably benign	Het
Hsph1	A	T	5: 149,618,418	V781D	possibly damaging	Het
Kdm3b	G	A	18: 34,796,862	V220M	probably damaging	Het
Klhl25	T	A	7: 75,866,520	Y391*	probably null	Het
Mc2r	A	T	18: 68,407,809	Y138N	probably damaging	Het
Mtap	C	A	4: 89,156,584	D106E	probably benign	Het
Nup43	G	T	10: 7,667,671	W37L	probably damaging	Het
Nxpe2	T	A	9: 48,326,363	E197D	probably damaging	Het
Olfr1098	A	T	2: 86,922,782	V250D	possibly damaging	Het
Olfr484	T	C	7: 108,124,456	Y269C	probably damaging	Het
Olfr544	T	A	7: 102,484,114	*335C	probably null	Het
Olfr934	C	A	9: 38,982,483	C187F	probably damaging	Het
Pitrm1	A	G	13: 6,555,575	H186R	probably damaging	Het
Pklr	C	T	3: 89,144,881	R467C	probably damaging	Het
Plxna2	A	G	1: 194,644,093	N112D	probably damaging	Het
Ppp1r16a	C	T	15: 76,693,669	Q328*	probably null	Het
Ppp3cb	A	C	14: 20,508,614		probably null	Het
Ralyl	A	C	3: 14,115,701	D68A	probably damaging	Het
Rif1	GCCACCA	GCCA	2: 52,110,324		probably benign	Het
S100a1	T	C	3: 90,511,312	N65S	probably damaging	Het
Scn11a	A	T	9: 119,795,663	M531K	probably damaging	Het
Slc5a5	T	A	8: 70,890,221	M232L	probably benign	Het
Tet3	A	T	6: 83,373,323	N1054K	probably damaging	Het
Tg	A	G	15: 66,698,559	N1427D	probably benign	Het
Tns1	A	C	1: 73,917,672	V530G	probably damaging	Het
Trcg1	C	A	9: 57,245,873	Q600K	possibly damaging	Het
Tshz3	A	G	7: 36,768,706	E40G	probably damaging	Het
Usp34	T	C	11: 23,384,420	F1138S	possibly damaging	Het
Vmn2r26	C	T	6: 124,061,644	T726I	probably benign	Het
Vmn2r97	A	T	17: 18,928,178	R112*	probably null	Het
Vwa2	G	T	19: 56,908,994	R577L	probably benign	Het
Vwa3b	A	C	1: 37,157,430	Q46P	probably damaging	Het
Wdr25	T	A	12: 108,992,799		probably null	Het
Wrap53	A	G	11: 69,562,400	L405P	probably damaging	Het
Zfp629	C	A	7: 127,611,989	W216L	probably damaging	Het

Other mutations in R3hcc1l

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00488:R3hcc1l	APN	19	42563952	missense	probably benign	0.04
IGL01731:R3hcc1l	APN	19	42562801	missense	probably benign	0.01
IGL01921:R3hcc1l	APN	19	42563781	missense	possibly damaging	0.87
IGL01933:R3hcc1l	APN	19	42562950	missense	probably damaging	0.99
IGL02047:R3hcc1l	APN	19	42563819	missense	probably benign	0.20
IGL02658:R3hcc1l	APN	19	42562702	missense	probably damaging	0.99
IGL02952:R3hcc1l	APN	19	42563994	missense	probably damaging	0.97
R0233:R3hcc1l	UTSW	19	42582921	critical splice donor site	probably null
R0233:R3hcc1l	UTSW	19	42582921	critical splice donor site	probably null
R0254:R3hcc1l	UTSW	19	42563148	missense	probably damaging	1.00
R0285:R3hcc1l	UTSW	19	42576129	missense	probably damaging	1.00
R0483:R3hcc1l	UTSW	19	42562556	utr 5 prime	probably benign
R0727:R3hcc1l	UTSW	19	42576075	missense	probably damaging	1.00
R1052:R3hcc1l	UTSW	19	42563654	missense	probably damaging	0.99
R1570:R3hcc1l	UTSW	19	42581954	missense	probably damaging	1.00
R1641:R3hcc1l	UTSW	19	42563607	missense	possibly damaging	0.87
R2378:R3hcc1l	UTSW	19	42563473	missense	probably damaging	0.99
R2696:R3hcc1l	UTSW	19	42563988	missense	possibly damaging	0.94
R3051:R3hcc1l	UTSW	19	42562625	nonsense	probably null
R3053:R3hcc1l	UTSW	19	42562625	nonsense	probably null
R4471:R3hcc1l	UTSW	19	42582820	splice site	probably benign
R4643:R3hcc1l	UTSW	19	42562800	missense	probably benign	0.09
R4772:R3hcc1l	UTSW	19	42583557	splice site	probably benign
R5524:R3hcc1l	UTSW	19	42563868	nonsense	probably null
R5976:R3hcc1l	UTSW	19	42563350	missense	probably benign	0.06
R6965:R3hcc1l	UTSW	19	42562845	missense	probably damaging	1.00
R7086:R3hcc1l	UTSW	19	42581970	missense	probably damaging	0.99
R7158:R3hcc1l	UTSW	19	42583429	missense	probably damaging	1.00
R7317:R3hcc1l	UTSW	19	42583540	nonsense	probably null
R7447:R3hcc1l	UTSW	19	42562662	missense	probably benign	0.02
R7792:R3hcc1l	UTSW	19	42563964	missense	probably damaging	0.96
R8222:R3hcc1l	UTSW	19	42576177	missense	probably damaging	1.00
R8756:R3hcc1l	UTSW	19	42563634	missense	probably damaging	0.99
R9204:R3hcc1l	UTSW	19	42563862	missense	probably benign	0.02
X0064:R3hcc1l	UTSW	19	42583545	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- GCAGTACAGTAGCCAGGTTCTGATG -3'
(R):5'- TAGTGAAGCCCTTGTGGACCAGAC -3'

Sequencing Primer
(F):5'- ATAATACAGCCCGGCTTGTTTG -3'
(R):5'- TTGTGGACCAGACCAAAGAC -3'

Posted On

2014-01-05