Incidental Mutation 'R4972:Tex9'
ID |
384532 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Tex9
|
Ensembl Gene |
ENSMUSG00000090626 |
Gene Name |
testis expressed gene 9 |
Synonyms |
tsec-1 |
MMRRC Submission |
042567-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.069)
|
Stock # |
R4972 (G1)
|
Quality Score |
135 |
Status
|
Validated
|
Chromosome |
9 |
Chromosomal Location |
72357676-72399494 bp(-) (GRCm39) |
Type of Mutation |
critical splice donor site (2 bp from exon) |
DNA Base Change (assembly) |
A to G
at 72385620 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
|
Ref Sequence |
ENSEMBL: ENSMUSP00000138929
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000085358]
[ENSMUST00000085358]
[ENSMUST00000085358]
[ENSMUST00000085358]
[ENSMUST00000183574]
[ENSMUST00000183574]
[ENSMUST00000183574]
[ENSMUST00000183574]
[ENSMUST00000183856]
[ENSMUST00000183856]
[ENSMUST00000185151]
[ENSMUST00000185151]
[ENSMUST00000185151]
[ENSMUST00000185151]
[ENSMUST00000184831]
[ENSMUST00000184831]
[ENSMUST00000184831]
[ENSMUST00000184831]
[ENSMUST00000184125]
[ENSMUST00000184125]
[ENSMUST00000184557]
[ENSMUST00000184557]
[ENSMUST00000184312]
[ENSMUST00000184312]
|
AlphaFold |
Q9D845 |
Predicted Effect |
probably null
Transcript: ENSMUST00000085358
|
SMART Domains |
Protein: ENSMUSP00000082467 Gene: ENSMUSG00000090626
Domain | Start | End | E-Value | Type |
coiled coil region
|
23 |
63 |
N/A |
INTRINSIC |
coiled coil region
|
186 |
344 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000085358
|
SMART Domains |
Protein: ENSMUSP00000082467 Gene: ENSMUSG00000090626
Domain | Start | End | E-Value | Type |
coiled coil region
|
23 |
63 |
N/A |
INTRINSIC |
coiled coil region
|
186 |
344 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000085358
|
SMART Domains |
Protein: ENSMUSP00000082467 Gene: ENSMUSG00000090626
Domain | Start | End | E-Value | Type |
coiled coil region
|
23 |
63 |
N/A |
INTRINSIC |
coiled coil region
|
186 |
344 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000085358
|
SMART Domains |
Protein: ENSMUSP00000082467 Gene: ENSMUSG00000090626
Domain | Start | End | E-Value | Type |
coiled coil region
|
23 |
63 |
N/A |
INTRINSIC |
coiled coil region
|
186 |
344 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000183399
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000183428
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000183428
|
Predicted Effect |
probably null
Transcript: ENSMUST00000183501
|
Predicted Effect |
probably null
Transcript: ENSMUST00000183501
|
Predicted Effect |
probably null
Transcript: ENSMUST00000183501
|
Predicted Effect |
probably null
Transcript: ENSMUST00000183501
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000183551
|
Predicted Effect |
probably null
Transcript: ENSMUST00000183574
|
SMART Domains |
Protein: ENSMUSP00000139386 Gene: ENSMUSG00000090626
Domain | Start | End | E-Value | Type |
coiled coil region
|
23 |
63 |
N/A |
INTRINSIC |
coiled coil region
|
186 |
208 |
N/A |
INTRINSIC |
coiled coil region
|
231 |
286 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000183574
|
SMART Domains |
Protein: ENSMUSP00000139386 Gene: ENSMUSG00000090626
Domain | Start | End | E-Value | Type |
coiled coil region
|
23 |
63 |
N/A |
INTRINSIC |
coiled coil region
|
186 |
208 |
N/A |
INTRINSIC |
coiled coil region
|
231 |
286 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000183574
|
SMART Domains |
Protein: ENSMUSP00000139386 Gene: ENSMUSG00000090626
Domain | Start | End | E-Value | Type |
coiled coil region
|
23 |
63 |
N/A |
INTRINSIC |
coiled coil region
|
186 |
208 |
N/A |
INTRINSIC |
coiled coil region
|
231 |
286 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000183574
|
SMART Domains |
Protein: ENSMUSP00000139386 Gene: ENSMUSG00000090626
Domain | Start | End | E-Value | Type |
coiled coil region
|
23 |
63 |
N/A |
INTRINSIC |
coiled coil region
|
186 |
208 |
N/A |
INTRINSIC |
coiled coil region
|
231 |
286 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000183856
|
SMART Domains |
Protein: ENSMUSP00000139247 Gene: ENSMUSG00000090626
Domain | Start | End | E-Value | Type |
coiled coil region
|
23 |
63 |
N/A |
INTRINSIC |
coiled coil region
|
186 |
328 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000183856
|
SMART Domains |
Protein: ENSMUSP00000139247 Gene: ENSMUSG00000090626
Domain | Start | End | E-Value | Type |
coiled coil region
|
23 |
63 |
N/A |
INTRINSIC |
coiled coil region
|
186 |
328 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000185151
|
Predicted Effect |
probably null
Transcript: ENSMUST00000185151
|
Predicted Effect |
probably null
Transcript: ENSMUST00000185151
|
Predicted Effect |
probably null
Transcript: ENSMUST00000185151
|
Predicted Effect |
probably null
Transcript: ENSMUST00000184831
|
SMART Domains |
Protein: ENSMUSP00000138999 Gene: ENSMUSG00000090626
Domain | Start | End | E-Value | Type |
coiled coil region
|
1 |
159 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000184831
|
SMART Domains |
Protein: ENSMUSP00000138999 Gene: ENSMUSG00000090626
Domain | Start | End | E-Value | Type |
coiled coil region
|
1 |
159 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000184831
|
SMART Domains |
Protein: ENSMUSP00000138999 Gene: ENSMUSG00000090626
Domain | Start | End | E-Value | Type |
coiled coil region
|
1 |
159 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000184831
|
SMART Domains |
Protein: ENSMUSP00000138999 Gene: ENSMUSG00000090626
Domain | Start | End | E-Value | Type |
coiled coil region
|
1 |
159 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000184125
|
SMART Domains |
Protein: ENSMUSP00000139026 Gene: ENSMUSG00000090626
Domain | Start | End | E-Value | Type |
coiled coil region
|
23 |
63 |
N/A |
INTRINSIC |
coiled coil region
|
186 |
344 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000184125
|
SMART Domains |
Protein: ENSMUSP00000139026 Gene: ENSMUSG00000090626
Domain | Start | End | E-Value | Type |
coiled coil region
|
23 |
63 |
N/A |
INTRINSIC |
coiled coil region
|
186 |
344 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000184557
|
SMART Domains |
Protein: ENSMUSP00000139212 Gene: ENSMUSG00000090626
Domain | Start | End | E-Value | Type |
coiled coil region
|
23 |
63 |
N/A |
INTRINSIC |
coiled coil region
|
186 |
280 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000184557
|
SMART Domains |
Protein: ENSMUSP00000139212 Gene: ENSMUSG00000090626
Domain | Start | End | E-Value | Type |
coiled coil region
|
23 |
63 |
N/A |
INTRINSIC |
coiled coil region
|
186 |
280 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000184312
|
SMART Domains |
Protein: ENSMUSP00000138844 Gene: ENSMUSG00000090626
Domain | Start | End | E-Value | Type |
coiled coil region
|
23 |
63 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000184312
|
SMART Domains |
Protein: ENSMUSP00000138844 Gene: ENSMUSG00000090626
Domain | Start | End | E-Value | Type |
coiled coil region
|
23 |
63 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000184734
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000184066
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000184624
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000185106
|
Meta Mutation Damage Score |
0.9494 |
Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.2%
- 10x: 96.0%
- 20x: 91.2%
|
Validation Efficiency |
93% (82/88) |
Allele List at MGI |
|
Other mutations in this stock |
Total: 72 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
3425401B19Rik |
A |
T |
14: 32,383,361 (GRCm39) |
I868N |
possibly damaging |
Het |
A730013G03Rik |
C |
G |
1: 192,516,081 (GRCm39) |
|
noncoding transcript |
Het |
Actl11 |
A |
G |
9: 107,807,155 (GRCm39) |
T493A |
probably benign |
Het |
Actn1 |
T |
C |
12: 80,219,813 (GRCm39) |
D686G |
probably benign |
Het |
Adamts1 |
G |
A |
16: 85,592,833 (GRCm39) |
T525I |
probably damaging |
Het |
Adcy10 |
T |
A |
1: 165,384,431 (GRCm39) |
L1064H |
probably damaging |
Het |
AI661453 |
A |
T |
17: 47,777,324 (GRCm39) |
|
probably benign |
Het |
Apba1 |
T |
A |
19: 23,889,900 (GRCm39) |
S433T |
probably benign |
Het |
Arid4b |
T |
A |
13: 14,334,857 (GRCm39) |
N355K |
probably benign |
Het |
Bsn |
A |
T |
9: 107,992,377 (GRCm39) |
M1125K |
probably damaging |
Het |
C2cd5 |
A |
T |
6: 142,958,950 (GRCm39) |
M1003K |
probably damaging |
Het |
Ccdc18 |
A |
G |
5: 108,339,869 (GRCm39) |
M805V |
probably benign |
Het |
Cep89 |
T |
G |
7: 35,131,977 (GRCm39) |
L637R |
probably damaging |
Het |
Col24a1 |
A |
T |
3: 145,215,439 (GRCm39) |
I1444F |
probably benign |
Het |
Commd4 |
A |
T |
9: 57,062,732 (GRCm39) |
S175T |
probably benign |
Het |
Coq7 |
A |
G |
7: 118,109,340 (GRCm39) |
V236A |
unknown |
Het |
Dctn2 |
C |
T |
10: 127,112,572 (GRCm39) |
R176C |
probably damaging |
Het |
Ddx31 |
T |
C |
2: 28,750,782 (GRCm39) |
F389L |
probably damaging |
Het |
Dgkz |
C |
T |
2: 91,776,047 (GRCm39) |
R72H |
probably benign |
Het |
Dpysl4 |
A |
G |
7: 138,670,206 (GRCm39) |
D24G |
probably damaging |
Het |
Dydc1 |
A |
G |
14: 40,804,295 (GRCm39) |
T106A |
probably benign |
Het |
F13b |
A |
G |
1: 139,438,661 (GRCm39) |
Y355C |
probably damaging |
Het |
Fcrl5 |
A |
G |
3: 87,361,957 (GRCm39) |
M407V |
probably benign |
Het |
Fzd5 |
C |
A |
1: 64,775,171 (GRCm39) |
V197L |
probably benign |
Het |
Galnt16 |
G |
T |
12: 80,619,103 (GRCm39) |
E70* |
probably null |
Het |
Gpr171 |
A |
T |
3: 59,005,386 (GRCm39) |
F130I |
probably damaging |
Het |
Grin3a |
T |
C |
4: 49,770,484 (GRCm39) |
N763D |
probably damaging |
Het |
Gsta2 |
A |
T |
9: 78,244,961 (GRCm39) |
M51K |
probably damaging |
Het |
Gvin-ps3 |
T |
C |
7: 105,682,521 (GRCm39) |
|
noncoding transcript |
Het |
Hacd3 |
A |
T |
9: 64,897,718 (GRCm39) |
I298N |
probably damaging |
Het |
Il18r1 |
C |
T |
1: 40,530,224 (GRCm39) |
P317L |
probably benign |
Het |
Iscu |
T |
A |
5: 113,915,037 (GRCm39) |
|
probably benign |
Het |
Kif6 |
A |
G |
17: 50,014,647 (GRCm39) |
D250G |
probably damaging |
Het |
Klk14 |
G |
A |
7: 43,341,501 (GRCm39) |
C51Y |
probably damaging |
Het |
Lcn6 |
T |
A |
2: 25,570,079 (GRCm39) |
C82S |
probably damaging |
Het |
Mob4 |
C |
G |
1: 55,190,161 (GRCm39) |
L135V |
possibly damaging |
Het |
Mpzl3 |
T |
A |
9: 44,973,554 (GRCm39) |
|
probably benign |
Het |
Mvp |
T |
C |
7: 126,588,970 (GRCm39) |
D599G |
probably damaging |
Het |
Myo1a |
T |
C |
10: 127,552,178 (GRCm39) |
Y766H |
probably benign |
Het |
Myo5b |
A |
G |
18: 74,760,264 (GRCm39) |
H260R |
probably damaging |
Het |
Nbea |
C |
T |
3: 55,992,667 (GRCm39) |
R313H |
probably damaging |
Het |
Necab1 |
T |
A |
4: 14,978,216 (GRCm39) |
D211V |
probably damaging |
Het |
Nefl |
G |
T |
14: 68,324,212 (GRCm39) |
|
probably benign |
Het |
Nfx1 |
T |
A |
4: 40,976,375 (GRCm39) |
D16E |
probably benign |
Het |
Nlrp9a |
G |
T |
7: 26,269,964 (GRCm39) |
C797F |
probably damaging |
Het |
Or4k36 |
T |
A |
2: 111,146,163 (GRCm39) |
V113E |
probably damaging |
Het |
Or5p5 |
A |
G |
7: 107,413,953 (GRCm39) |
Q56R |
probably benign |
Het |
Pde6b |
A |
G |
5: 108,573,130 (GRCm39) |
D500G |
probably benign |
Het |
Pgs1 |
T |
C |
11: 117,896,719 (GRCm39) |
|
probably null |
Het |
Polr3b |
T |
A |
10: 84,473,988 (GRCm39) |
I189N |
probably damaging |
Het |
Ppwd1 |
A |
T |
13: 104,356,616 (GRCm39) |
S300T |
probably benign |
Het |
Prl2c2 |
A |
C |
13: 13,176,755 (GRCm39) |
N55K |
possibly damaging |
Het |
Prpf19 |
C |
T |
19: 10,876,709 (GRCm39) |
|
probably benign |
Het |
Prph2 |
G |
T |
17: 47,221,733 (GRCm39) |
L37F |
possibly damaging |
Het |
Ptprg |
G |
T |
14: 12,226,427 (GRCm38) |
R565L |
possibly damaging |
Het |
Rab8a |
C |
T |
8: 72,925,119 (GRCm39) |
T74M |
probably damaging |
Het |
Rexo1 |
A |
T |
10: 80,385,527 (GRCm39) |
F510L |
probably damaging |
Het |
Rexo2 |
G |
T |
9: 48,390,689 (GRCm39) |
T51K |
probably damaging |
Het |
Sh3d21 |
T |
C |
4: 126,046,209 (GRCm39) |
K147R |
possibly damaging |
Het |
Skint6 |
A |
G |
4: 112,692,265 (GRCm39) |
I1062T |
probably benign |
Het |
Spag16 |
C |
T |
1: 70,764,087 (GRCm39) |
R636W |
probably damaging |
Het |
Spata16 |
T |
C |
3: 26,894,872 (GRCm39) |
I307T |
possibly damaging |
Het |
Speer4f2 |
T |
G |
5: 17,579,423 (GRCm39) |
I74S |
probably benign |
Het |
Svep1 |
T |
A |
4: 58,087,778 (GRCm39) |
Y1767F |
possibly damaging |
Het |
Swt1 |
T |
C |
1: 151,299,293 (GRCm39) |
S7G |
probably benign |
Het |
Thsd7b |
C |
A |
1: 130,116,309 (GRCm39) |
P1354H |
probably damaging |
Het |
Ticrr |
A |
G |
7: 79,319,416 (GRCm39) |
D467G |
probably damaging |
Het |
Tmco5b |
A |
C |
2: 113,127,338 (GRCm39) |
D303A |
probably damaging |
Het |
Trpm7 |
A |
G |
2: 126,665,978 (GRCm39) |
V876A |
probably damaging |
Het |
Ttc21a |
G |
A |
9: 119,774,027 (GRCm39) |
E245K |
probably benign |
Het |
Vezt |
C |
T |
10: 93,836,212 (GRCm39) |
|
probably null |
Het |
Zscan20 |
G |
A |
4: 128,486,152 (GRCm39) |
P183S |
probably benign |
Het |
|
Other mutations in Tex9 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00467:Tex9
|
APN |
9 |
72,385,117 (GRCm39) |
missense |
probably benign |
0.32 |
IGL01109:Tex9
|
APN |
9 |
72,395,349 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01373:Tex9
|
APN |
9 |
72,388,036 (GRCm39) |
missense |
possibly damaging |
0.78 |
IGL02496:Tex9
|
APN |
9 |
72,389,774 (GRCm39) |
missense |
probably benign |
0.25 |
IGL02569:Tex9
|
APN |
9 |
72,385,645 (GRCm39) |
missense |
probably damaging |
1.00 |
barbacoa
|
UTSW |
9 |
72,394,060 (GRCm39) |
critical splice donor site |
probably null |
|
R0068:Tex9
|
UTSW |
9 |
72,394,051 (GRCm39) |
splice site |
probably benign |
|
R0481:Tex9
|
UTSW |
9 |
72,385,678 (GRCm39) |
nonsense |
probably null |
|
R0628:Tex9
|
UTSW |
9 |
72,399,233 (GRCm39) |
start codon destroyed |
probably null |
0.99 |
R0962:Tex9
|
UTSW |
9 |
72,391,374 (GRCm39) |
missense |
probably benign |
|
R2212:Tex9
|
UTSW |
9 |
72,385,040 (GRCm39) |
missense |
possibly damaging |
0.89 |
R3412:Tex9
|
UTSW |
9 |
72,385,040 (GRCm39) |
missense |
possibly damaging |
0.89 |
R4373:Tex9
|
UTSW |
9 |
72,387,877 (GRCm39) |
critical splice donor site |
probably null |
|
R5323:Tex9
|
UTSW |
9 |
72,385,187 (GRCm39) |
missense |
probably damaging |
1.00 |
R5401:Tex9
|
UTSW |
9 |
72,394,060 (GRCm39) |
critical splice donor site |
probably null |
|
R6149:Tex9
|
UTSW |
9 |
72,369,282 (GRCm39) |
splice site |
probably null |
|
R7396:Tex9
|
UTSW |
9 |
72,388,072 (GRCm39) |
splice site |
probably null |
|
R7412:Tex9
|
UTSW |
9 |
72,394,060 (GRCm39) |
critical splice donor site |
probably null |
|
R8198:Tex9
|
UTSW |
9 |
72,387,940 (GRCm39) |
start gained |
probably benign |
|
R8745:Tex9
|
UTSW |
9 |
72,389,778 (GRCm39) |
missense |
probably benign |
0.00 |
R9767:Tex9
|
UTSW |
9 |
72,368,518 (GRCm39) |
nonsense |
probably null |
|
X0024:Tex9
|
UTSW |
9 |
72,387,956 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Predicted Primers |
PCR Primer
(F):5'- GCCTCAGATGGTCTTGGATG -3'
(R):5'- GGTCTCCTGTTAGACTGTCTAC -3'
Sequencing Primer
(F):5'- CATACTCACTATCAGAAATGGAAGTC -3'
(R):5'- CAAGCTCCATGTGATGCA -3'
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Posted On |
2016-04-27 |